Gene annotation
Transcriptome id Sobic.002G160400.1
Synonym Sb02g020410, APS1, ADG1,
Functional annotation Glucose-1-phosphate adenylyltransferase small subunit (PubMedID : 26186930)
"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed
UniProt C5X8X7
Pfam PF00483
Panther DB PTHR22572 PTHR22572:SF101
NCBI CDD KOG1322; GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase
KEGG Orthology K00975; glucose-1-phosphate adenylyltransferase
Gene Ontology GO:0016779; nucleotidyltransferase activity GO:0009058biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G48300 : ADP glucose pyrophosphorylase 1
RAP-DB (Rice) LOC_Os09g12660.1 : glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a013686 , Zm00025a030663 , Zm00025a006223
Brachypodium KQJ96293 , KQJ89760 , KQJ89759 , KQJ89758 , KQJ96292
Barley HORVU7Hr1G067620.3 , HORVU7Hr1G067620.4 , HORVU7Hr1G067620.2
Wheat TraesCS7A02G287400 , TraesCS7A02G287400 , TraesCS7B02G183300 , TraesCS7B02G183300 , TraesCS7D02G284900 , TraesCS7D02G284900 , TraesCS5B02G175800 , TraesCS5D02G182600
Populus -


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cDNA sequences
Sobic.002G160400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G338300 - -
2 Sobic.006G262501 - -
3 Sobic.001G034500 SEC14 cytosolic factor family protein, putative, expressed -
4 Sobic.010G222900 expressed protein -
5 Sobic.004G071500 OsFBX49 - F-box domain containing protein, expressed -
6 Sobic.003G183466 - -
7 Sobic.007G194500 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
8 Sobic.004G033200 expressed protein -
9 Sobic.003G379900 plus-3 domain containing protein, putative, expressed -
10 Sobic.003G396700 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
11 Sobic.010G170000 Triacylglycerol biosynthesis defect 1(PubMedID : 26320239)@O-acyltransferase, putative, expressed K11155: diacylglycerol O-acyltransferase 1
12 Sobic.003G084000 transporter family protein, putative, expressed -
13 Sobic.003G368901 - -
14 Sobic.003G180100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
15 Sobic.002G266300 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed -
16 Sobic.005G207800 coatomer subunit beta, putative, expressed K17302: COPB2, coatomer subunit beta'
17 Sobic.005G036200 protein of unknown function containing protein, expressed -
18 Sobic.005G046250 - -
19 Sobic.004G242200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nucleobase-ascorbate transporter, putative, expressed -
20 Sobic.002G429700 AMP deaminase, putative, expressed K01490: AMP deaminase


Gene co-expression network
sample Sobic002G160400 Sobic002G160400 Sobic003G338300 Sobic003G338300 Sobic002G160400--Sobic003G338300 Sobic006G262501 Sobic006G262501 Sobic002G160400--Sobic006G262501 Sobic001G034500 Sobic001G034500 Sobic002G160400--Sobic001G034500 Sobic010G222900 Sobic010G222900 Sobic002G160400--Sobic010G222900 Sobic004G071500 Sobic004G071500 Sobic002G160400--Sobic004G071500 Sobic003G183466 Sobic003G183466 Sobic002G160400--Sobic003G183466 Sobic007G194500 Sobic007G194500 Sobic002G160400--Sobic007G194500 Sobic004G033200 Sobic004G033200 Sobic002G160400--Sobic004G033200 Sobic003G379900 Sobic003G379900 Sobic002G160400--Sobic003G379900 Sobic003G084000 Sobic003G084000 Sobic003G338300--Sobic003G084000 Sobic003G338300--Sobic002G160400 Sobic004G188800 Sobic004G188800 Sobic003G338300--Sobic004G188800 Sobic009G212600 Sobic009G212600 Sobic003G338300--Sobic009G212600 Sobic005G079900 Sobic005G079900 Sobic003G338300--Sobic005G079900 Sobic001G395700 Sobic001G395700 Sobic003G338300--Sobic001G395700 Sobic005G046250 Sobic005G046250 Sobic003G338300--Sobic005G046250 Sobic003G029800 Sobic003G029800 Sobic003G338300--Sobic003G029800 Sobic009G234800 Sobic009G234800 Sobic003G338300--Sobic009G234800 Sobic005G045700 Sobic005G045700 Sobic006G262501--Sobic005G045700 Sobic002G127900 Sobic002G127900 Sobic006G262501--Sobic002G127900 Sobic005G036200 Sobic005G036200 Sobic006G262501--Sobic005G036200 Sobic008G118100 Sobic008G118100 Sobic006G262501--Sobic008G118100 Sobic003G368901 Sobic003G368901 Sobic006G262501--Sobic003G368901 Sobic009G012600 Sobic009G012600 Sobic006G262501--Sobic009G012600 Sobic007G050800 Sobic007G050800 Sobic006G262501--Sobic007G050800 Sobic005G139300 Sobic005G139300 Sobic006G262501--Sobic005G139300 Sobic010G175000 Sobic010G175000 Sobic006G262501--Sobic010G175000 Sobic001G477700 Sobic001G477700 Sobic001G034500--Sobic001G477700 Sobic003G284000 Sobic003G284000 Sobic001G034500--Sobic003G284000 Sobic006G154100 Sobic006G154100 Sobic001G034500--Sobic006G154100 Sobic001G004100 Sobic001G004100 Sobic001G034500--Sobic001G004100 Sobic001G135500 Sobic001G135500 Sobic001G034500--Sobic001G135500 Sobic001G413800 Sobic001G413800 Sobic001G034500--Sobic001G413800 Sobic003G212900 Sobic003G212900 Sobic001G034500--Sobic003G212900 Sobic001G097500 Sobic001G097500 Sobic001G034500--Sobic001G097500 Sobic007G042900 Sobic007G042900 Sobic001G034500--Sobic007G042900 Sobic004G040800 Sobic004G040800 Sobic010G222900--Sobic004G040800 Sobic010G222900--Sobic007G050800 Sobic010G222900--Sobic006G262501 Sobic004G234300 Sobic004G234300 Sobic010G222900--Sobic004G234300 Sobic004G222200 Sobic004G222200 Sobic010G222900--Sobic004G222200 Sobic003G369600 Sobic003G369600 Sobic010G222900--Sobic003G369600 Sobic010G222900--Sobic008G118100 Sobic010G222900--Sobic010G175000 Sobic003G075400 Sobic003G075400 Sobic010G222900--Sobic003G075400 Sobic004G071500--Sobic005G046250 Sobic001G152700 Sobic001G152700 Sobic004G071500--Sobic001G152700 Sobic004G000400 Sobic004G000400 Sobic004G071500--Sobic004G000400 Sobic001G229300 Sobic001G229300 Sobic004G071500--Sobic001G229300 Sobic010G160300 Sobic010G160300 Sobic004G071500--Sobic010G160300 Sobic006G239400 Sobic006G239400 Sobic004G071500--Sobic006G239400 Sobic004G071500--Sobic001G034500 Sobic005G087300 Sobic005G087300 Sobic004G071500--Sobic005G087300 Sobic006G106600 Sobic006G106600 Sobic004G071500--Sobic006G106600 Sobic003G326500 Sobic003G326500 Sobic003G183466--Sobic003G326500 Sobic010G143600 Sobic010G143600 Sobic003G183466--Sobic010G143600 Sobic002G173400 Sobic002G173400 Sobic003G183466--Sobic002G173400 Sobic003G129500 Sobic003G129500 Sobic003G183466--Sobic003G129500 Sobic004G278900 Sobic004G278900 Sobic003G183466--Sobic004G278900 Sobic009G120400 Sobic009G120400 Sobic003G183466--Sobic009G120400 Sobic002G095300 Sobic002G095300 Sobic003G183466--Sobic002G095300 Sobic002G286632 Sobic002G286632 Sobic003G183466--Sobic002G286632 Sobic008G046200 Sobic008G046200 Sobic003G183466--Sobic008G046200 Sobic007G194500--Sobic005G036200 Sobic007G194500--Sobic009G012600 Sobic007G194500--Sobic006G262501 Sobic007G192200 Sobic007G192200 Sobic007G194500--Sobic007G192200 Sobic007G050900 Sobic007G050900 Sobic007G194500--Sobic007G050900 Sobic010G054800 Sobic010G054800 Sobic007G194500--Sobic010G054800 Sobic003G129300 Sobic003G129300 Sobic007G194500--Sobic003G129300 Sobic010G087100 Sobic010G087100 Sobic007G194500--Sobic010G087100 Sobic004G242200 Sobic004G242200 Sobic007G194500--Sobic004G242200 Sobic002G266300 Sobic002G266300 Sobic004G033200--Sobic002G266300 Sobic007G053100 Sobic007G053100 Sobic004G033200--Sobic007G053100 Sobic008G191850 Sobic008G191850 Sobic004G033200--Sobic008G191850 Sobic010G024600 Sobic010G024600 Sobic004G033200--Sobic010G024600 Sobic004G066500 Sobic004G066500 Sobic004G033200--Sobic004G066500 Sobic001G508200 Sobic001G508200 Sobic004G033200--Sobic001G508200 Sobic009G052600 Sobic009G052600 Sobic004G033200--Sobic009G052600 Sobic008G116600 Sobic008G116600 Sobic004G033200--Sobic008G116600 Sobic004G347500 Sobic004G347500 Sobic004G033200--Sobic004G347500 Sobic002G238800 Sobic002G238800 Sobic003G379900--Sobic002G238800 Sobic002G420400 Sobic002G420400 Sobic003G379900--Sobic002G420400 Sobic005G034200 Sobic005G034200 Sobic003G379900--Sobic005G034200 Sobic003G379900--Sobic010G087100 Sobic003G042200 Sobic003G042200 Sobic003G379900--Sobic003G042200 Sobic004G339900 Sobic004G339900 Sobic003G379900--Sobic004G339900 Sobic001G081800 Sobic001G081800 Sobic003G379900--Sobic001G081800 Sobic006G184200 Sobic006G184200 Sobic003G379900--Sobic006G184200 Sobic003G379900--Sobic005G036200
Octagon: transcription factors


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