Gene annotation
Transcriptome id Sobic.003G396700.1
Synonym ATDCL3, Sb03g043355, DCL3
Functional annotation DCL2, putative, expressed
UniProt A0A1B6Q7R2
Pfam PF00270 PF02170 PF00271 PF03368 PF00636
Panther DB PTHR14950 PTHR14950:SF21
NCBI CDD KOG0701; dsRNA-specific nuclease Dicer and related ribonucleases
KEGG Orthology K11592; DICER1, endoribonuclease Dicer
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding GO:0005515protein binding GO:0016891endoribonuclease activity, producing 5'-phosphomonoesters GO:0006396RNA processing GO:0004525ribonuclease III activity GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT3G43920 : dicer-like 3
RAP-DB (Rice) LOC_Os01g68120.1 : DCL3, putative, expressed
MaizeGDB (Corn) Zm00025a026342 , Zm00025a006550
Brachypodium KQK05888 , KQK05889 , KQK05891 , KQK05890 , PNT71106 , PNT71105 , PNT71104 , PNT73427 , PNT73428
Barley HORVU3Hr1G092430.22 , HORVU3Hr1G092430.20 , HORVU3Hr1G092430.21 , HORVU3Hr1G092430.7 , HORVU3Hr1G092430.3 , HORVU3Hr1G092430.2 , HORVU3Hr1G092430.1 , HORVU3Hr1G092430.9 , HORVU3Hr1G092430.8 , HORVU3Hr1G092430.19 , HORVU3Hr1G092430.18 , HORVU3Hr1G092430.12 , HORVU3Hr1G092430.10 , HORVU3Hr1G092430.6 , HORVU3Hr1G092430.5 , HORVU3Hr1G092430.4 , HORVU3Hr1G092430.17 , HORVU3Hr1G092430.16 , HORVU3Hr1G092430.15 , HORVU3Hr1G092430.14 , HORVU3Hr1G092430.13 , HORVU3Hr1G092430.11
Wheat TraesCS3D02G411200 , TraesCS3D02G411200 , TraesCS3D02G411200 , TraesCS3D02G411200 , TraesCS3D02G411200 , TraesCS3D02G411200 , TraesCS3D02G411200 , TraesCS3D02G411200 , TraesCS3B02G450600 , TraesCS3B02G450600 , TraesCS3B02G450600 , TraesCS3A02G415400 , TraesCS3A02G415400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G129500 argonaute, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
2 Sobic.003G388000 tetratricopeptide repeat domain containing protein, expressed K03350: APC3, anaphase-promoting complex subunit 3
3 Sobic.008G063600 glycosyl hydrolase family protein 27, putative, expressed -
4 Sobic.002G043000 HEN1, putative, expressed -
5 Sobic.006G192332 - -
6 Sobic.008G111600 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta
7 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -
8 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
9 Sobic.002G078100 PPR repeat domain containing protein, putative, expressed -
10 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
11 Sobic.003G183466 - -
12 Sobic.004G322300 nucleotide binding protein, putative, expressed K03351: anaphase-promoting complex subunit 4
13 Sobic.010G264900 OsFBX79 - F-box domain containing protein, expressed -
14 Sobic.006G150001 - -
15 Sobic.003G256800 RNA polymerase III subunit RPC82 family protein, putative, expressed K03023: RPC3, DNA-directed RNA polymerase III subunit RPC3
16 Sobic.004G240000 phosphoenolpyruvate carboxylase kinase, putative, expressed -
17 Sobic.001G027500 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
18 Sobic.003G023200 DNA repair protein Rad51, putative, expressed K10870: RAD51L2, RAD51-like protein 2
19 Sobic.003G072500 transcription factor X1, putative, expressed -
20 Sobic.003G431600 expressed protein -


Gene co-expression network
sample Sobic003G396700 Sobic003G396700 Sobic003G129500 Sobic003G129500 Sobic003G396700--Sobic003G129500 Sobic003G388000 Sobic003G388000 Sobic003G396700--Sobic003G388000 Sobic008G063600 Sobic008G063600 Sobic003G396700--Sobic008G063600 Sobic002G043000 Sobic002G043000 Sobic003G396700--Sobic002G043000 Sobic006G192332 Sobic006G192332 Sobic003G396700--Sobic006G192332 Sobic008G111600 Sobic008G111600 Sobic003G396700--Sobic008G111600 Sobic002G426100 Sobic002G426100 Sobic003G396700--Sobic002G426100 Sobic006G181800 Sobic006G181800 Sobic003G396700--Sobic006G181800 Sobic002G078100 Sobic002G078100 Sobic003G396700--Sobic002G078100 Sobic005G153000 Sobic005G153000 Sobic003G129500--Sobic005G153000 Sobic002G112000 Sobic002G112000 Sobic003G129500--Sobic002G112000 Sobic002G168000 Sobic002G168000 Sobic003G129500--Sobic002G168000 Sobic009G012400 Sobic009G012400 Sobic003G129500--Sobic009G012400 Sobic010G250400 Sobic010G250400 Sobic003G129500--Sobic010G250400 Sobic003G423800 Sobic003G423800 Sobic003G129500--Sobic003G423800 Sobic003G370300 Sobic003G370300 Sobic003G129500--Sobic003G370300 Sobic010G222800 Sobic010G222800 Sobic003G129500--Sobic010G222800 Sobic003G183466 Sobic003G183466 Sobic003G129500--Sobic003G183466 Sobic002G371600 Sobic002G371600 Sobic003G388000--Sobic002G371600 Sobic004G322300 Sobic004G322300 Sobic003G388000--Sobic004G322300 Sobic002G160700 Sobic002G160700 Sobic003G388000--Sobic002G160700 Sobic004G030400 Sobic004G030400 Sobic003G388000--Sobic004G030400 Sobic004G177600 Sobic004G177600 Sobic003G388000--Sobic004G177600 Sobic003G388000--Sobic003G396700 Sobic010G188000 Sobic010G188000 Sobic003G388000--Sobic010G188000 Sobic001G340000 Sobic001G340000 Sobic003G388000--Sobic001G340000 Sobic001G475000 Sobic001G475000 Sobic003G388000--Sobic001G475000 Sobic001G027500 Sobic001G027500 Sobic008G063600--Sobic001G027500 Sobic008G063600--Sobic002G168000 Sobic009G012600 Sobic009G012600 Sobic008G063600--Sobic009G012600 Sobic008G063600--Sobic003G396700 Sobic009G045300 Sobic009G045300 Sobic008G063600--Sobic009G045300 Sobic003G188600 Sobic003G188600 Sobic008G063600--Sobic003G188600 Sobic008G063600--Sobic003G129500 Sobic008G045000 Sobic008G045000 Sobic008G063600--Sobic008G045000 Sobic009G188900 Sobic009G188900 Sobic008G063600--Sobic009G188900 Sobic002G043000--Sobic008G111600 Sobic004G215900 Sobic004G215900 Sobic002G043000--Sobic004G215900 Sobic002G043000--Sobic002G426100 Sobic006G236000 Sobic006G236000 Sobic002G043000--Sobic006G236000 Sobic008G068100 Sobic008G068100 Sobic002G043000--Sobic008G068100 Sobic002G043000--Sobic006G181800 Sobic004G038100 Sobic004G038100 Sobic002G043000--Sobic004G038100 Sobic006G280100 Sobic006G280100 Sobic002G043000--Sobic006G280100 Sobic004G129500 Sobic004G129500 Sobic002G043000--Sobic004G129500 Sobic006G192332--Sobic001G475000 Sobic006G192332--Sobic003G396700 Sobic006G192332--Sobic001G340000 Sobic007G154350 Sobic007G154350 Sobic006G192332--Sobic007G154350 Sobic006G192332--Sobic003G388000 Sobic004G146100 Sobic004G146100 Sobic006G192332--Sobic004G146100 Sobic009G040250 Sobic009G040250 Sobic006G192332--Sobic009G040250 Sobic009G000100 Sobic009G000100 Sobic006G192332--Sobic009G000100 Sobic002G241600 Sobic002G241600 Sobic006G192332--Sobic002G241600 Sobic008G111600--Sobic002G426100 Sobic008G111600--Sobic006G181800 Sobic002G362200 Sobic002G362200 Sobic008G111600--Sobic002G362200 Sobic008G111600--Sobic004G215900 Sobic008G111600--Sobic002G043000 Sobic001G024000 Sobic001G024000 Sobic008G111600--Sobic001G024000 Sobic008G111600--Sobic002G078100 Sobic002G003300 Sobic002G003300 Sobic008G111600--Sobic002G003300 Sobic003G144000 Sobic003G144000 Sobic008G111600--Sobic003G144000 Sobic009G120400 Sobic009G120400 Sobic002G426100--Sobic009G120400 Sobic002G426100--Sobic008G111600 Sobic002G426100--Sobic006G181800 Sobic002G426100--Sobic002G078100 Sobic002G426100--Sobic002G043000 Sobic006G017800 Sobic006G017800 Sobic002G426100--Sobic006G017800 Sobic002G066800 Sobic002G066800 Sobic002G426100--Sobic002G066800 Sobic007G186400 Sobic007G186400 Sobic002G426100--Sobic007G186400 Sobic002G426100--Sobic004G129500 Sobic006G181800--Sobic008G111600 Sobic006G181800--Sobic004G038100 Sobic006G181800--Sobic002G426100 Sobic006G033101 Sobic006G033101 Sobic006G181800--Sobic006G033101 Sobic006G181800--Sobic002G371600 Sobic006G181800--Sobic002G043000 Sobic008G092800 Sobic008G092800 Sobic006G181800--Sobic008G092800 Sobic006G181800--Sobic006G236000 Sobic006G181800--Sobic010G188000 Sobic002G078100--Sobic002G066800 Sobic002G078100--Sobic002G426100 Sobic002G078100--Sobic009G120400 Sobic008G047500 Sobic008G047500 Sobic002G078100--Sobic008G047500 Sobic006G191200 Sobic006G191200 Sobic002G078100--Sobic006G191200 Sobic001G051400 Sobic001G051400 Sobic002G078100--Sobic001G051400 Sobic002G078100--Sobic008G111600 Sobic003G194800 Sobic003G194800 Sobic002G078100--Sobic003G194800 Sobic007G034200 Sobic007G034200 Sobic002G078100--Sobic007G034200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.