Gene annotation
Transcriptome id Sobic.005G207800.1
Synonym Sb05g026175
Functional annotation coatomer subunit beta, putative, expressed
UniProt C5Y7H0
Pfam PF00400
Panther DB PTHR19876 PTHR19876:SF8
NCBI CDD -
KEGG Orthology K17302; COPB2, coatomer subunit beta'
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G79990 : structural molecules
RAP-DB (Rice) LOC_Os02g11830.2 : coatomer subunit beta, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS2D02G464300 , TraesCS2D02G464300 , TraesCS7B02G443700 , TraesCS4A02G475000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G131100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@N-rich protein, putative, expressed -
2 Sobic.010G190800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1680 domain containing protein, putative, expressed K09955: uncharacterized protein
3 Sobic.002G160400 Glucose-1-phosphate adenylyltransferase small subunit(PubMedID : 26186930)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
4 Sobic.003G328900 UBA/TS-N domain containing protein, expressed -
5 Sobic.010G087100 MCM9 - Putative minichromosome maintenance MCM family subunit 9, expressed K10738: DNA helicase MCM9
6 Sobic.003G084200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.005G165800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@SEY1, putative, expressed -
8 Sobic.006G262501 - -
9 Sobic.001G242500 - -
10 Sobic.007G194500 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
11 Sobic.009G002200 formin-like protein 1 precursor, putative, expressed -
12 Sobic.001G456400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@protein of unknown function DUF1675 domain containing protein, expressed -
13 Sobic.004G242200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nucleobase-ascorbate transporter, putative, expressed -
14 Sobic.001G506300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@xyloglucan galactosyltransferase KATAMARI1, putative, expressed -
15 Sobic.003G396700 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
16 Sobic.007G187700 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
17 Sobic.005G150900 growth regulating factor protein, putative, expressed -
18 Sobic.005G104300 - -
19 Sobic.007G173300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@rhamnogalacturonate lyase, putative, expressed K18195: RGL4, rhamnogalacturonan endolyase
20 Sobic.001G460100 heparanase-like protein precursor, putative, expressed K07964: heparanase


Gene co-expression network
sample Sobic005G207800 Sobic005G207800 Sobic002G131100 Sobic002G131100 Sobic005G207800--Sobic002G131100 Sobic010G190800 Sobic010G190800 Sobic005G207800--Sobic010G190800 Sobic002G160400 Sobic002G160400 Sobic005G207800--Sobic002G160400 Sobic003G328900 Sobic003G328900 Sobic005G207800--Sobic003G328900 Sobic010G087100 Sobic010G087100 Sobic005G207800--Sobic010G087100 Sobic003G084200 Sobic003G084200 Sobic005G207800--Sobic003G084200 Sobic005G165800 Sobic005G165800 Sobic005G207800--Sobic005G165800 Sobic006G262501 Sobic006G262501 Sobic005G207800--Sobic006G262501 Sobic001G242500 Sobic001G242500 Sobic005G207800--Sobic001G242500 Sobic002G131100--Sobic010G087100 Sobic001G506300 Sobic001G506300 Sobic002G131100--Sobic001G506300 Sobic002G131100--Sobic003G084200 Sobic001G118800 Sobic001G118800 Sobic002G131100--Sobic001G118800 Sobic005G068800 Sobic005G068800 Sobic002G131100--Sobic005G068800 Sobic007G187700 Sobic007G187700 Sobic002G131100--Sobic007G187700 Sobic002G131100--Sobic005G165800 Sobic001G507000 Sobic001G507000 Sobic002G131100--Sobic001G507000 Sobic006G195500 Sobic006G195500 Sobic002G131100--Sobic006G195500 Sobic009G002200 Sobic009G002200 Sobic010G190800--Sobic009G002200 Sobic003G317700 Sobic003G317700 Sobic010G190800--Sobic003G317700 Sobic010G190800--Sobic010G087100 Sobic005G036200 Sobic005G036200 Sobic010G190800--Sobic005G036200 Sobic004G078500 Sobic004G078500 Sobic010G190800--Sobic004G078500 Sobic001G456400 Sobic001G456400 Sobic010G190800--Sobic001G456400 Sobic010G190800--Sobic001G242500 Sobic004G190500 Sobic004G190500 Sobic010G190800--Sobic004G190500 Sobic001G081800 Sobic001G081800 Sobic010G190800--Sobic001G081800 Sobic003G338300 Sobic003G338300 Sobic002G160400--Sobic003G338300 Sobic002G160400--Sobic006G262501 Sobic001G034500 Sobic001G034500 Sobic002G160400--Sobic001G034500 Sobic010G222900 Sobic010G222900 Sobic002G160400--Sobic010G222900 Sobic004G071500 Sobic004G071500 Sobic002G160400--Sobic004G071500 Sobic003G183466 Sobic003G183466 Sobic002G160400--Sobic003G183466 Sobic007G194500 Sobic007G194500 Sobic002G160400--Sobic007G194500 Sobic004G033200 Sobic004G033200 Sobic002G160400--Sobic004G033200 Sobic003G379900 Sobic003G379900 Sobic002G160400--Sobic003G379900 Sobic003G328900--Sobic002G131100 Sobic003G328900--Sobic005G207800 Sobic006G106600 Sobic006G106600 Sobic003G328900--Sobic006G106600 Sobic003G328900--Sobic004G033200 Sobic003G328900--Sobic002G160400 Sobic003G328900--Sobic010G087100 Sobic010G172400 Sobic010G172400 Sobic003G328900--Sobic010G172400 Sobic002G420500 Sobic002G420500 Sobic003G328900--Sobic002G420500 Sobic004G000400 Sobic004G000400 Sobic003G328900--Sobic004G000400 Sobic002G095300 Sobic002G095300 Sobic010G087100--Sobic002G095300 Sobic010G087100--Sobic003G379900 Sobic010G087100--Sobic001G506300 Sobic010G087100--Sobic002G131100 Sobic008G090400 Sobic008G090400 Sobic010G087100--Sobic008G090400 Sobic008G118100 Sobic008G118100 Sobic010G087100--Sobic008G118100 Sobic002G238800 Sobic002G238800 Sobic010G087100--Sobic002G238800 Sobic008G160600 Sobic008G160600 Sobic010G087100--Sobic008G160600 Sobic010G087100--Sobic009G002200 Sobic001G104500 Sobic001G104500 Sobic003G084200--Sobic001G104500 Sobic007G050800 Sobic007G050800 Sobic003G084200--Sobic007G050800 Sobic006G275500 Sobic006G275500 Sobic003G084200--Sobic006G275500 Sobic005G157300 Sobic005G157300 Sobic003G084200--Sobic005G157300 Sobic002G168000 Sobic002G168000 Sobic003G084200--Sobic002G168000 Sobic003G084200--Sobic007G187700 Sobic003G244000 Sobic003G244000 Sobic003G084200--Sobic003G244000 Sobic003G084200--Sobic009G002200 Sobic003G084200--Sobic001G456400 Sobic001G396900 Sobic001G396900 Sobic005G165800--Sobic001G396900 Sobic004G114600 Sobic004G114600 Sobic005G165800--Sobic004G114600 Sobic006G208000 Sobic006G208000 Sobic005G165800--Sobic006G208000 Sobic006G034300 Sobic006G034300 Sobic005G165800--Sobic006G034300 Sobic002G413200 Sobic002G413200 Sobic005G165800--Sobic002G413200 Sobic004G281700 Sobic004G281700 Sobic005G165800--Sobic004G281700 Sobic001G044300 Sobic001G044300 Sobic005G165800--Sobic001G044300 Sobic003G419500 Sobic003G419500 Sobic005G165800--Sobic003G419500 Sobic010G131500 Sobic010G131500 Sobic005G165800--Sobic010G131500 Sobic005G045700 Sobic005G045700 Sobic006G262501--Sobic005G045700 Sobic002G127900 Sobic002G127900 Sobic006G262501--Sobic002G127900 Sobic006G262501--Sobic005G036200 Sobic006G262501--Sobic008G118100 Sobic003G368901 Sobic003G368901 Sobic006G262501--Sobic003G368901 Sobic009G012600 Sobic009G012600 Sobic006G262501--Sobic009G012600 Sobic006G262501--Sobic007G050800 Sobic005G139300 Sobic005G139300 Sobic006G262501--Sobic005G139300 Sobic010G175000 Sobic010G175000 Sobic006G262501--Sobic010G175000 Sobic001G242500--Sobic008G118100 Sobic003G188600 Sobic003G188600 Sobic001G242500--Sobic003G188600 Sobic001G242500--Sobic008G090400 Sobic001G242500--Sobic010G087100 Sobic006G281900 Sobic006G281900 Sobic001G242500--Sobic006G281900 Sobic002G317700 Sobic002G317700 Sobic001G242500--Sobic002G317700 Sobic001G242500--Sobic004G190500 Sobic001G242500--Sobic007G187700 Sobic001G377700 Sobic001G377700 Sobic001G242500--Sobic001G377700
Octagon: transcription factors


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