Gene annotation
Transcriptome id Sobic.007G173300.2,Sobic.007G173300.1,Sobic.007G173300.3
Synonym Sb07g024560
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
rhamnogalacturonate lyase, putative, expressed
UniProt A0A1Z5RAY3 , C5YNB6
Pfam PF14686 PF14683 PF06045
Panther DB PTHR32018 PTHR32018:SF1
NCBI CDD -
KEGG Orthology K18195; RGL4, rhamnogalacturonan endolyase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09890 : Rhamnogalacturonate lyase family protein
RAP-DB (Rice) LOC_Os08g44020.1,LOC_Os08g44020.2 : rhamnogalacturonate lyase, putative, expressed
MaizeGDB (Corn) Zm00025a005651
Brachypodium KQJ99316
Barley HORVU7Hr1G058090.22 , HORVU7Hr1G058090.23 , HORVU7Hr1G058090.20 , HORVU7Hr1G058090.21 , HORVU7Hr1G058090.26 , HORVU7Hr1G058090.25 , HORVU7Hr1G058090.28 , HORVU7Hr1G058090.29 , HORVU7Hr1G058090.9 , HORVU7Hr1G058090.8 , HORVU7Hr1G058090.3 , HORVU7Hr1G058090.2 , HORVU7Hr1G058090.1 , HORVU7Hr1G058090.7 , HORVU7Hr1G058090.6 , HORVU7Hr1G058090.5 , HORVU7Hr1G058090.4 , HORVU7Hr1G058090.19 , HORVU7Hr1G058090.18 , HORVU7Hr1G058090.13 , HORVU7Hr1G058090.12 , HORVU7Hr1G058090.11 , HORVU7Hr1G058090.10 , HORVU7Hr1G058090.17 , HORVU7Hr1G058090.16 , HORVU7Hr1G058090.15 , HORVU7Hr1G058090.14
Wheat TraesCS7B02G174100 , TraesCS7A02G276300 , TraesCS7D02G276200 , TraesCS7D02G276200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G014700 THION20 - Plant thionin family protein precursor, putative, expressed -
2 Sobic.008G048600 - -
3 Sobic.001G287900 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
4 Sobic.004G195400 heavy metal associated domain containing protein, expressed -
5 Sobic.006G131100 - -
6 Sobic.001G152901 "YABBY transcription factor, "(PubMedID : 22581231) -
7 Sobic.003G411100 transferase family protein, putative, expressed K15400: omega-hydroxypalmitate O-feruloyl transferase
8 Sobic.006G189500 OsMADS17 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
9 Sobic.007G217800 expressed protein -
10 Sobic.001G324600 cysteine proteinase inhibitor 8 precursor, putative, expressed -
11 Sobic.002G076600 rc - bHLH transcription factor regulating proanthocyanidin production in seeds, expressed -
12 Sobic.006G144101 - -
13 Sobic.008G138200 RNA recognition motif family protein, expressed -
14 Sobic.001G009100 expressed protein -
15 Sobic.002G345500 DEF3 - Defensin and Defensin-like DEFL family, expressed -
16 Sobic.005G024000 rhamnogalacturonate lyase, putative, expressed K18195: RGL4, rhamnogalacturonan endolyase
17 Sobic.008G143300 - -
18 Sobic.008G031000 LTPL26 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
19 Sobic.004G090400 - -
20 Sobic.006G163200 COBRA, putative, expressed -


Gene co-expression network
sample Sobic007G173300 Sobic007G173300 Sobic004G014700 Sobic004G014700 Sobic007G173300--Sobic004G014700 Sobic008G048600 Sobic008G048600 Sobic007G173300--Sobic008G048600 Sobic001G287900 Sobic001G287900 Sobic007G173300--Sobic001G287900 Sobic004G195400 Sobic004G195400 Sobic007G173300--Sobic004G195400 Sobic006G131100 Sobic006G131100 Sobic007G173300--Sobic006G131100 Sobic001G152901 Sobic001G152901 Sobic007G173300--Sobic001G152901 Sobic003G411100 Sobic003G411100 Sobic007G173300--Sobic003G411100 Sobic006G189500 Sobic006G189500 Sobic007G173300--Sobic006G189500 Sobic007G217800 Sobic007G217800 Sobic007G173300--Sobic007G217800 Sobic004G014700--Sobic008G048600 Sobic004G014700--Sobic004G195400 Sobic004G014700--Sobic006G189500 Sobic004G014700--Sobic003G411100 Sobic004G014700--Sobic006G131100 Sobic002G076600 Sobic002G076600 Sobic004G014700--Sobic002G076600 Sobic008G123350 Sobic008G123350 Sobic004G014700--Sobic008G123350 Sobic006G006100 Sobic006G006100 Sobic004G014700--Sobic006G006100 Sobic005G064400 Sobic005G064400 Sobic004G014700--Sobic005G064400 Sobic008G048600--Sobic003G411100 Sobic008G048600--Sobic004G014700 Sobic008G048600--Sobic004G195400 Sobic006G144101 Sobic006G144101 Sobic008G048600--Sobic006G144101 Sobic008G048600--Sobic006G189500 Sobic008G048600--Sobic006G131100 Sobic002G345500 Sobic002G345500 Sobic008G048600--Sobic002G345500 Sobic005G179700 Sobic005G179700 Sobic008G048600--Sobic005G179700 Sobic005G200400 Sobic005G200400 Sobic008G048600--Sobic005G200400 Sobic010G118900 Sobic010G118900 Sobic001G287900--Sobic010G118900 Sobic001G287900--Sobic007G217800 Sobic002G121900 Sobic002G121900 Sobic001G287900--Sobic002G121900 Sobic008G138200 Sobic008G138200 Sobic001G287900--Sobic008G138200 Sobic008G031000 Sobic008G031000 Sobic001G287900--Sobic008G031000 Sobic003G274000 Sobic003G274000 Sobic001G287900--Sobic003G274000 Sobic001G287900--Sobic001G152901 Sobic003G044800 Sobic003G044800 Sobic001G287900--Sobic003G044800 Sobic007G043000 Sobic007G043000 Sobic001G287900--Sobic007G043000 Sobic004G195400--Sobic004G014700 Sobic004G195400--Sobic008G048600 Sobic004G195400--Sobic006G189500 Sobic004G195400--Sobic003G411100 Sobic004G195400--Sobic006G131100 Sobic004G195400--Sobic002G076600 Sobic001G324600 Sobic001G324600 Sobic004G195400--Sobic001G324600 Sobic004G195400--Sobic006G006100 Sobic004G195400--Sobic006G144101 Sobic006G131100--Sobic004G014700 Sobic006G131100--Sobic008G048600 Sobic006G131100--Sobic006G189500 Sobic006G131100--Sobic004G195400 Sobic006G131100--Sobic003G411100 Sobic006G131100--Sobic002G076600 Sobic006G131100--Sobic006G144101 Sobic006G131100--Sobic006G006100 Sobic006G131100--Sobic005G064400 Sobic001G152901--Sobic007G217800 Sobic001G152901--Sobic002G076600 Sobic001G152901--Sobic004G014700 Sobic001G152901--Sobic008G138200 Sobic006G163200 Sobic006G163200 Sobic001G152901--Sobic006G163200 Sobic001G152901--Sobic001G287900 Sobic001G152901--Sobic006G131100 Sobic001G152901--Sobic006G189500 Sobic005G070800 Sobic005G070800 Sobic001G152901--Sobic005G070800 Sobic003G411100--Sobic006G144101 Sobic003G411100--Sobic008G048600 Sobic003G411100--Sobic002G345500 Sobic004G090400 Sobic004G090400 Sobic003G411100--Sobic004G090400 Sobic003G411100--Sobic005G200400 Sobic002G352501 Sobic002G352501 Sobic003G411100--Sobic002G352501 Sobic003G411100--Sobic005G179700 Sobic002G162100 Sobic002G162100 Sobic003G411100--Sobic002G162100 Sobic003G411100--Sobic004G014700 Sobic006G189500--Sobic004G195400 Sobic006G189500--Sobic004G014700 Sobic006G189500--Sobic008G048600 Sobic006G189500--Sobic006G131100 Sobic006G189500--Sobic002G076600 Sobic006G189500--Sobic003G411100 Sobic006G189500--Sobic008G123350 Sobic006G189500--Sobic006G006100 Sobic006G189500--Sobic005G064400 Sobic007G217800--Sobic001G152901 Sobic007G217800--Sobic001G287900 Sobic007G217800--Sobic004G014700 Sobic007G217800--Sobic006G189500 Sobic007G217800--Sobic002G076600 Sobic007G217800--Sobic004G195400 Sobic007G217800--Sobic008G138200 Sobic007G217800--Sobic006G163200 Sobic003G063700 Sobic003G063700 Sobic007G217800--Sobic003G063700
Octagon: transcription factors


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