Gene annotation
| Transcriptome id | Sobic.010G190800.1 |
|---|---|
| Synonym | Sb10g024080 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) DUF1680 domain containing protein, putative, expressed |
| UniProt | C5Z625 |
| Pfam | PF07944 |
| Panther DB | PTHR31151 PTHR31151:SF5 |
| NCBI CDD | - |
| KEGG Orthology | K09955; uncharacterized protein |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G12960 : Putative glycosyl hydrolase of unknown function (DUF1680) |
|---|---|
| RAP-DB (Rice) | LOC_Os06g41030.1 : DUF1680 domain containing protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a051566 , Zm00025a051567 |
| Brachypodium | KQK17675 |
| Barley | HORVU7Hr1G094640.15 , HORVU7Hr1G094640.17 , HORVU7Hr1G094640.21 , HORVU7Hr1G094640.20 , HORVU7Hr1G094640.22 , HORVU7Hr1G094640.49 , HORVU7Hr1G094640.48 , HORVU7Hr1G094640.41 , HORVU7Hr1G094640.47 , HORVU7Hr1G094640.46 , HORVU7Hr1G094640.45 , HORVU7Hr1G094640.36 , HORVU7Hr1G094640.34 , HORVU7Hr1G094640.35 , HORVU7Hr1G094640.32 , HORVU7Hr1G094640.50 , HORVU7Hr1G094640.52 , HORVU7Hr1G094640.53 , HORVU7Hr1G094640.8 , HORVU7Hr1G094640.9 , HORVU7Hr1G094640.6 , HORVU7Hr1G094640.4 , HORVU7Hr1G094640.5 , HORVU7Hr1G094640.2 , HORVU7Hr1G094640.3 , HORVU7Hr1G094640.51 |
| Wheat | TraesCS7B02G303700 , TraesCS7B02G303800 , TraesCS7B02G303800 , TraesCS7D02G397600 , TraesCS7A02G404200 , TraesCS7D02G397500 , TraesCS7A02G404100 , TraesCS7A02G404100 |
| Populus | - |
JBrowse
| Sobic.010G190800 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G002200 | formin-like protein 1 precursor, putative, expressed | - |
| 2 | Sobic.003G317700 | cyclic nucleotide-gated ion channel 2, putative, expressed | - |
| 3 | Sobic.010G087100 | MCM9 - Putative minichromosome maintenance MCM family subunit 9, expressed | K10738: DNA helicase MCM9 |
| 4 | Sobic.005G036200 | protein of unknown function containing protein, expressed | - |
| 5 | Sobic.004G078500 | Leucine Rich Repeat family protein, expressed | - |
| 6 | Sobic.001G456400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@protein of unknown function DUF1675 domain containing protein, expressed | - |
| 7 | Sobic.001G242500 | - | - |
| 8 | Sobic.004G190500 | sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@sucrose transporter BoSUT1, putative, expressed | K15378: solute carrier family 45, member 1/2/4 |
| 9 | Sobic.001G081800 | GASR3 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed | - |
| 10 | Sobic.005G196600 | expressed protein | - |
| 11 | Sobic.003G282500 | keratin, type I cytoskeletal 9, putative, expressed | - |
| 12 | Sobic.004G207766 | - | - |
| 13 | Sobic.003G290400 | glucan endo-1,3-beta-glucosidase precursor, putative, expressed | - |
| 14 | Sobic.001G085200 | X8 domain containing protein, expressed | - |
| 15 | Sobic.002G112000 | protein binding protein, putative, expressed | - |
| 16 | Sobic.004G238801 | - | - |
| 17 | Sobic.007G082500 | MBTB20 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed | K10523: speckle-type POZ protein |
| 18 | Sobic.010G054800 | LTPL128 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 19 | Sobic.006G135800 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 20 | Sobic.002G420400 | - | - |
Gene co-expression network
Octagon: transcription factors
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