Gene annotation
Transcriptome id Sobic.003G282500.1
Synonym PDF1, Sb03g033390
Functional annotation keratin, type I cytoskeletal 9, putative, expressed
UniProt C5XIF9
Pfam -
Panther DB PTHR33210 PTHR33210:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G42840 : protodermal factor 1
RAP-DB (Rice) LOC_Os01g52690.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a027723
Brachypodium KQK09552
Barley HORVU2Hr1G045560.4 , HORVU2Hr1G045560.6 , HORVU2Hr1G045560.2 , HORVU2Hr1G045560.3
Wheat TraesCS3B02G318200 , TraesCS3D02G284100 , TraesCS3A02G284200 , TraesCS3A02G284200
Populus -


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cDNA sequences
Sobic.003G282500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G057800 kelch repeat-containing protein, putative, expressed -
2 Sobic.004G317000 growth regulating factor protein, putative, expressed -
3 Sobic.007G201900 expressed protein -
4 Sobic.003G129200 argonaute, putative, expressed -
5 Sobic.005G196600 expressed protein -
6 Sobic.010G255000 uncharacterized protein At4g06744 precursor, putative, expressed -
7 Sobic.004G282601 - -
8 Sobic.003G250100 homeobox domain containing protein, expressed -
9 Sobic.009G143200 DUF630/DUF632 domains containing protein, putative, expressed -
10 Sobic.002G112000 protein binding protein, putative, expressed -
11 Sobic.007G121600 - -
12 Sobic.005G153000 agenet domain containing protein, expressed -
13 Sobic.003G244000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
14 Sobic.007G162400 ABC-2 type transporter domain containing protein, expressed -
15 Sobic.002G255600 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
16 Sobic.001G104500 growth-regulating factor, putative, expressed -
17 Sobic.007G121650 - -
18 Sobic.004G190500 sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@sucrose transporter BoSUT1, putative, expressed K15378: solute carrier family 45, member 1/2/4
19 Sobic.010G190800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1680 domain containing protein, putative, expressed K09955: uncharacterized protein
20 Sobic.001G118800 homologous-pairing protein meu13, putative, expressed K06695: 26S proteasome regulatory subunit, ATPase 3, interacting protein


Gene co-expression network
sample Sobic003G282500 Sobic003G282500 Sobic009G057800 Sobic009G057800 Sobic003G282500--Sobic009G057800 Sobic004G317000 Sobic004G317000 Sobic003G282500--Sobic004G317000 Sobic007G201900 Sobic007G201900 Sobic003G282500--Sobic007G201900 Sobic003G129200 Sobic003G129200 Sobic003G282500--Sobic003G129200 Sobic005G196600 Sobic005G196600 Sobic003G282500--Sobic005G196600 Sobic010G255000 Sobic010G255000 Sobic003G282500--Sobic010G255000 Sobic004G282601 Sobic004G282601 Sobic003G282500--Sobic004G282601 Sobic003G250100 Sobic003G250100 Sobic003G282500--Sobic003G250100 Sobic009G143200 Sobic009G143200 Sobic003G282500--Sobic009G143200 Sobic009G057800--Sobic007G201900 Sobic002G112000 Sobic002G112000 Sobic009G057800--Sobic002G112000 Sobic001G101700 Sobic001G101700 Sobic009G057800--Sobic001G101700 Sobic002G279400 Sobic002G279400 Sobic009G057800--Sobic002G279400 Sobic008G151600 Sobic008G151600 Sobic009G057800--Sobic008G151600 Sobic007G209200 Sobic007G209200 Sobic009G057800--Sobic007G209200 Sobic009G057800--Sobic010G255000 Sobic009G057800--Sobic009G143200 Sobic009G057800--Sobic003G282500 Sobic004G317000--Sobic009G143200 Sobic007G187700 Sobic007G187700 Sobic004G317000--Sobic007G187700 Sobic001G104500 Sobic001G104500 Sobic004G317000--Sobic001G104500 Sobic006G196600 Sobic006G196600 Sobic004G317000--Sobic006G196600 Sobic004G317000--Sobic003G282500 Sobic001G238900 Sobic001G238900 Sobic004G317000--Sobic001G238900 Sobic001G054700 Sobic001G054700 Sobic004G317000--Sobic001G054700 Sobic002G223900 Sobic002G223900 Sobic004G317000--Sobic002G223900 Sobic004G317000--Sobic004G282601 Sobic007G201900--Sobic009G057800 Sobic007G201900--Sobic001G101700 Sobic007G201900--Sobic010G255000 Sobic007G201900--Sobic002G112000 Sobic007G201900--Sobic002G279400 Sobic001G101900 Sobic001G101900 Sobic007G201900--Sobic001G101900 Sobic003G244000 Sobic003G244000 Sobic007G201900--Sobic003G244000 Sobic007G201900--Sobic009G143200 Sobic007G147200 Sobic007G147200 Sobic007G201900--Sobic007G147200 Sobic003G374100 Sobic003G374100 Sobic003G129200--Sobic003G374100 Sobic004G234600 Sobic004G234600 Sobic003G129200--Sobic004G234600 Sobic008G137700 Sobic008G137700 Sobic003G129200--Sobic008G137700 Sobic001G137800 Sobic001G137800 Sobic003G129200--Sobic001G137800 Sobic003G088600 Sobic003G088600 Sobic003G129200--Sobic003G088600 Sobic002G053350 Sobic002G053350 Sobic003G129200--Sobic002G053350 Sobic002G239101 Sobic002G239101 Sobic003G129200--Sobic002G239101 Sobic003G295100 Sobic003G295100 Sobic003G129200--Sobic003G295100 Sobic001G235200 Sobic001G235200 Sobic003G129200--Sobic001G235200 Sobic010G037901 Sobic010G037901 Sobic005G196600--Sobic010G037901 Sobic005G153000 Sobic005G153000 Sobic005G196600--Sobic005G153000 Sobic006G226000 Sobic006G226000 Sobic005G196600--Sobic006G226000 Sobic005G196600--Sobic004G282601 Sobic003G086800 Sobic003G086800 Sobic005G196600--Sobic003G086800 Sobic009G031800 Sobic009G031800 Sobic005G196600--Sobic009G031800 Sobic001G136400 Sobic001G136400 Sobic005G196600--Sobic001G136400 Sobic002G055800 Sobic002G055800 Sobic005G196600--Sobic002G055800 Sobic006G135800 Sobic006G135800 Sobic005G196600--Sobic006G135800 Sobic010G255000--Sobic007G147200 Sobic010G255000--Sobic001G101700 Sobic010G255000--Sobic007G201900 Sobic003G046400 Sobic003G046400 Sobic010G255000--Sobic003G046400 Sobic002G255600 Sobic002G255600 Sobic010G255000--Sobic002G255600 Sobic007G137101 Sobic007G137101 Sobic010G255000--Sobic007G137101 Sobic001G106500 Sobic001G106500 Sobic010G255000--Sobic001G106500 Sobic007G121200 Sobic007G121200 Sobic010G255000--Sobic007G121200 Sobic010G220800 Sobic010G220800 Sobic010G255000--Sobic010G220800 Sobic004G282601--Sobic005G153000 Sobic004G282601--Sobic001G104500 Sobic004G282601--Sobic010G037901 Sobic009G077300 Sobic009G077300 Sobic004G282601--Sobic009G077300 Sobic009G002200 Sobic009G002200 Sobic004G282601--Sobic009G002200 Sobic004G282601--Sobic007G187700 Sobic003G290400 Sobic003G290400 Sobic004G282601--Sobic003G290400 Sobic006G221300 Sobic006G221300 Sobic004G282601--Sobic006G221300 Sobic004G282601--Sobic005G196600 Sobic003G250100--Sobic004G234600 Sobic004G281000 Sobic004G281000 Sobic003G250100--Sobic004G281000 Sobic010G183800 Sobic010G183800 Sobic003G250100--Sobic010G183800 Sobic002G196500 Sobic002G196500 Sobic003G250100--Sobic002G196500 Sobic001G456000 Sobic001G456000 Sobic003G250100--Sobic001G456000 Sobic003G250100--Sobic010G255000 Sobic002G078900 Sobic002G078900 Sobic003G250100--Sobic002G078900 Sobic001G071600 Sobic001G071600 Sobic003G250100--Sobic001G071600 Sobic001G457600 Sobic001G457600 Sobic003G250100--Sobic001G457600 Sobic005G157300 Sobic005G157300 Sobic009G143200--Sobic005G157300 Sobic009G143200--Sobic004G317000 Sobic009G143200--Sobic001G054700 Sobic003G055600 Sobic003G055600 Sobic009G143200--Sobic003G055600 Sobic009G143200--Sobic006G221300 Sobic009G143200--Sobic009G077300 Sobic004G108400 Sobic004G108400 Sobic009G143200--Sobic004G108400 Sobic004G052200 Sobic004G052200 Sobic009G143200--Sobic004G052200 Sobic009G143200--Sobic007G187700
Octagon: transcription factors


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