Gene annotation
Transcriptome id Sobic.003G328900.1
Synonym Sb03g037500
Functional annotation UBA/TS-N domain containing protein, expressed
UniProt C5XMJ5
Pfam PF01694 PF00627
Panther DB PTHR12917 PTHR12917:SF20
NCBI CDD KOG4463; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0004252serine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT3G56740 : Ubiquitin-associated (UBA) protein
RAP-DB (Rice) LOC_Os01g59160.1 : UBA/TS-N domain containing protein, expressed
MaizeGDB (Corn) Zm00025a027155
Brachypodium KQK10166 , KQK10220 , KQK10221 , KQK10223 , KQK10222
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G328900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G131100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@N-rich protein, putative, expressed -
2 Sobic.005G207800 coatomer subunit beta, putative, expressed K17302: COPB2, coatomer subunit beta'
3 Sobic.006G106600 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
4 Sobic.004G033200 expressed protein -
5 Sobic.002G160400 Glucose-1-phosphate adenylyltransferase small subunit(PubMedID : 26186930)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
6 Sobic.010G087100 MCM9 - Putative minichromosome maintenance MCM family subunit 9, expressed K10738: DNA helicase MCM9
7 Sobic.010G172400 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
8 Sobic.002G420500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.004G000400 OsPDIL1-4 protein disulfide isomerase PDIL1-4, expressed K09580: PDIA1, protein disulfide-isomerase A1
10 Sobic.007G051400 transmembrane 9 superfamily member, putative, expressed -
11 Sobic.007G112100 enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed K00208: enoyl-[acyl-carrier protein] reductase I
12 Sobic.001G239900 amino acid permease, putative, expressed -
13 Sobic.002G158500 ankyrin, putative, expressed -
14 Sobic.003G180100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
15 Sobic.007G043400 transaldolase, putative, expressed K00616: E2.2.1.2, talA, transaldolase
16 Sobic.003G312400 dymeclin, putative, expressed -
17 Sobic.007G203900 methyl-binding domain protein MBD, putative, expressed -
18 Sobic.001G506300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@xyloglucan galactosyltransferase KATAMARI1, putative, expressed -
19 Sobic.004G330600 GHMP kinases ATP-binding protein, putative, expressed K01597: MVD, diphosphomevalonate decarboxylase
20 Sobic.005G068800 TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed K10728: topoisomerase (DNA) II binding protein 1


Gene co-expression network
sample Sobic003G328900 Sobic003G328900 Sobic002G131100 Sobic002G131100 Sobic003G328900--Sobic002G131100 Sobic005G207800 Sobic005G207800 Sobic003G328900--Sobic005G207800 Sobic006G106600 Sobic006G106600 Sobic003G328900--Sobic006G106600 Sobic004G033200 Sobic004G033200 Sobic003G328900--Sobic004G033200 Sobic002G160400 Sobic002G160400 Sobic003G328900--Sobic002G160400 Sobic010G087100 Sobic010G087100 Sobic003G328900--Sobic010G087100 Sobic010G172400 Sobic010G172400 Sobic003G328900--Sobic010G172400 Sobic002G420500 Sobic002G420500 Sobic003G328900--Sobic002G420500 Sobic004G000400 Sobic004G000400 Sobic003G328900--Sobic004G000400 Sobic002G131100--Sobic010G087100 Sobic001G506300 Sobic001G506300 Sobic002G131100--Sobic001G506300 Sobic003G084200 Sobic003G084200 Sobic002G131100--Sobic003G084200 Sobic001G118800 Sobic001G118800 Sobic002G131100--Sobic001G118800 Sobic005G068800 Sobic005G068800 Sobic002G131100--Sobic005G068800 Sobic007G187700 Sobic007G187700 Sobic002G131100--Sobic007G187700 Sobic005G165800 Sobic005G165800 Sobic002G131100--Sobic005G165800 Sobic001G507000 Sobic001G507000 Sobic002G131100--Sobic001G507000 Sobic006G195500 Sobic006G195500 Sobic002G131100--Sobic006G195500 Sobic005G207800--Sobic002G131100 Sobic010G190800 Sobic010G190800 Sobic005G207800--Sobic010G190800 Sobic005G207800--Sobic002G160400 Sobic005G207800--Sobic003G328900 Sobic005G207800--Sobic010G087100 Sobic005G207800--Sobic003G084200 Sobic005G207800--Sobic005G165800 Sobic006G262501 Sobic006G262501 Sobic005G207800--Sobic006G262501 Sobic001G242500 Sobic001G242500 Sobic005G207800--Sobic001G242500 Sobic006G106600--Sobic004G000400 Sobic002G173400 Sobic002G173400 Sobic006G106600--Sobic002G173400 Sobic007G186400 Sobic007G186400 Sobic006G106600--Sobic007G186400 Sobic004G215600 Sobic004G215600 Sobic006G106600--Sobic004G215600 Sobic001G229300 Sobic001G229300 Sobic006G106600--Sobic001G229300 Sobic001G191900 Sobic001G191900 Sobic006G106600--Sobic001G191900 Sobic002G271400 Sobic002G271400 Sobic006G106600--Sobic002G271400 Sobic010G030000 Sobic010G030000 Sobic006G106600--Sobic010G030000 Sobic008G131900 Sobic008G131900 Sobic006G106600--Sobic008G131900 Sobic002G266300 Sobic002G266300 Sobic004G033200--Sobic002G266300 Sobic007G053100 Sobic007G053100 Sobic004G033200--Sobic007G053100 Sobic008G191850 Sobic008G191850 Sobic004G033200--Sobic008G191850 Sobic010G024600 Sobic010G024600 Sobic004G033200--Sobic010G024600 Sobic004G066500 Sobic004G066500 Sobic004G033200--Sobic004G066500 Sobic001G508200 Sobic001G508200 Sobic004G033200--Sobic001G508200 Sobic009G052600 Sobic009G052600 Sobic004G033200--Sobic009G052600 Sobic008G116600 Sobic008G116600 Sobic004G033200--Sobic008G116600 Sobic004G347500 Sobic004G347500 Sobic004G033200--Sobic004G347500 Sobic003G338300 Sobic003G338300 Sobic002G160400--Sobic003G338300 Sobic002G160400--Sobic006G262501 Sobic001G034500 Sobic001G034500 Sobic002G160400--Sobic001G034500 Sobic010G222900 Sobic010G222900 Sobic002G160400--Sobic010G222900 Sobic004G071500 Sobic004G071500 Sobic002G160400--Sobic004G071500 Sobic003G183466 Sobic003G183466 Sobic002G160400--Sobic003G183466 Sobic007G194500 Sobic007G194500 Sobic002G160400--Sobic007G194500 Sobic002G160400--Sobic004G033200 Sobic003G379900 Sobic003G379900 Sobic002G160400--Sobic003G379900 Sobic002G095300 Sobic002G095300 Sobic010G087100--Sobic002G095300 Sobic010G087100--Sobic003G379900 Sobic010G087100--Sobic001G506300 Sobic010G087100--Sobic002G131100 Sobic008G090400 Sobic008G090400 Sobic010G087100--Sobic008G090400 Sobic008G118100 Sobic008G118100 Sobic010G087100--Sobic008G118100 Sobic002G238800 Sobic002G238800 Sobic010G087100--Sobic002G238800 Sobic008G160600 Sobic008G160600 Sobic010G087100--Sobic008G160600 Sobic009G002200 Sobic009G002200 Sobic010G087100--Sobic009G002200 Sobic001G467100 Sobic001G467100 Sobic010G172400--Sobic001G467100 Sobic003G222700 Sobic003G222700 Sobic010G172400--Sobic003G222700 Sobic002G399900 Sobic002G399900 Sobic010G172400--Sobic002G399900 Sobic006G091000 Sobic006G091000 Sobic010G172400--Sobic006G091000 Sobic002G182000 Sobic002G182000 Sobic010G172400--Sobic002G182000 Sobic005G114500 Sobic005G114500 Sobic010G172400--Sobic005G114500 Sobic001G474400 Sobic001G474400 Sobic010G172400--Sobic001G474400 Sobic001G097900 Sobic001G097900 Sobic010G172400--Sobic001G097900 Sobic001G012900 Sobic001G012900 Sobic010G172400--Sobic001G012900 Sobic002G238500 Sobic002G238500 Sobic002G420500--Sobic002G238500 Sobic002G420500--Sobic005G068800 Sobic001G515200 Sobic001G515200 Sobic002G420500--Sobic001G515200 Sobic002G420500--Sobic008G118100 Sobic003G147500 Sobic003G147500 Sobic002G420500--Sobic003G147500 Sobic007G112100 Sobic007G112100 Sobic002G420500--Sobic007G112100 Sobic001G464000 Sobic001G464000 Sobic002G420500--Sobic001G464000 Sobic003G412800 Sobic003G412800 Sobic002G420500--Sobic003G412800 Sobic007G219100 Sobic007G219100 Sobic002G420500--Sobic007G219100 Sobic004G000400--Sobic006G106600 Sobic004G000400--Sobic002G173400 Sobic004G000400--Sobic007G186400 Sobic009G120400 Sobic009G120400 Sobic004G000400--Sobic009G120400 Sobic004G350200 Sobic004G350200 Sobic004G000400--Sobic004G350200 Sobic004G000400--Sobic002G271400 Sobic004G000400--Sobic004G215600 Sobic002G123600 Sobic002G123600 Sobic004G000400--Sobic002G123600 Sobic010G257500 Sobic010G257500 Sobic004G000400--Sobic010G257500
Octagon: transcription factors


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