Gene annotation
Transcriptome id Sobic.007G203900.1
Synonym ATMBD2, MBD2, Sb07g027120, MBD02
Functional annotation methyl-binding domain protein MBD, putative, expressed
UniProt A0A1Z5RAU7
Pfam PF07496 PF01429
Panther DB PTHR12396
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005634nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G35330 : methyl-CPG-binding domain protein 02
RAP-DB (Rice) LOC_Os09g32090.1 : methyl-binding domain protein MBD, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G186100 expressed protein -
2 Sobic.001G542900 uncharacterized Cys-rich domain containing protein, putative, expressed -
3 Sobic.004G226500 dehydrogenase, putative, expressed K00001: E1.1.1.1, alcohol dehydrogenase
4 Sobic.004G153000 expressed protein -
5 Sobic.003G326800 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
6 Sobic.007G003100 transmembrane protein 18, putative, expressed -
7 Sobic.003G009300 methyltransferase domain containing protein, putative, expressed K06127: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase
8 Sobic.003G312400 dymeclin, putative, expressed -
9 Sobic.010G040900 trafficking protein particle complex subunit 4, putative, expressed -
10 Sobic.004G033500 expressed protein -
11 Sobic.006G114400 OsGrx_S15.2 - glutaredoxin subgroup II, expressed K07390: grxD, monothiol glutaredoxin
12 Sobic.004G112900 expressed protein -
13 Sobic.008G110500 UDP-N-acetylglucosamine transferase subunit ALG13, putative, expressed K07432: beta-1,4-N-acetylglucosaminyltransferase
14 Sobic.001G220900 adaptin ear-binding coat-associated protein 2, putative, expressed -
15 Sobic.002G399500 SNARE associated Golgi protein, putative, expressed -
16 Sobic.003G222700 similar to DEAD-box ATP-dependent RNA helicase 26(PubMedID : 29862293)@- K17679: ATP-dependent RNA helicase MSS116, mitochondrial
17 Sobic.010G046300 rRNA-processing protein FCF, putative, expressed K14566: UTP24, U3 small nucleolar RNA-associated protein 24
18 Sobic.007G060700 phosphopantothenate--cysteine ligase, putative, expressed K01922: PPCS, phosphopantothenate---cysteine ligase (ATP)
19 Sobic.003G224300 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
20 Sobic.007G173700 WD domain, G-beta repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic007G203900 Sobic007G203900 Sobic004G186100 Sobic004G186100 Sobic007G203900--Sobic004G186100 Sobic001G542900 Sobic001G542900 Sobic007G203900--Sobic001G542900 Sobic004G226500 Sobic004G226500 Sobic007G203900--Sobic004G226500 Sobic004G153000 Sobic004G153000 Sobic007G203900--Sobic004G153000 Sobic003G326800 Sobic003G326800 Sobic007G203900--Sobic003G326800 Sobic007G003100 Sobic007G003100 Sobic007G203900--Sobic007G003100 Sobic003G009300 Sobic003G009300 Sobic007G203900--Sobic003G009300 Sobic003G312400 Sobic003G312400 Sobic007G203900--Sobic003G312400 Sobic010G040900 Sobic010G040900 Sobic007G203900--Sobic010G040900 Sobic010G002800 Sobic010G002800 Sobic004G186100--Sobic010G002800 Sobic009G206600 Sobic009G206600 Sobic004G186100--Sobic009G206600 Sobic007G022700 Sobic007G022700 Sobic004G186100--Sobic007G022700 Sobic010G258000 Sobic010G258000 Sobic004G186100--Sobic010G258000 Sobic004G186100--Sobic007G003100 Sobic003G222700 Sobic003G222700 Sobic004G186100--Sobic003G222700 Sobic001G073600 Sobic001G073600 Sobic004G186100--Sobic001G073600 Sobic006G203900 Sobic006G203900 Sobic004G186100--Sobic006G203900 Sobic003G085500 Sobic003G085500 Sobic004G186100--Sobic003G085500 Sobic007G217400 Sobic007G217400 Sobic001G542900--Sobic007G217400 Sobic002G423800 Sobic002G423800 Sobic001G542900--Sobic002G423800 Sobic004G335000 Sobic004G335000 Sobic001G542900--Sobic004G335000 Sobic008G110500 Sobic008G110500 Sobic001G542900--Sobic008G110500 Sobic003G043400 Sobic003G043400 Sobic001G542900--Sobic003G043400 Sobic001G444300 Sobic001G444300 Sobic001G542900--Sobic001G444300 Sobic002G141700 Sobic002G141700 Sobic001G542900--Sobic002G141700 Sobic009G164700 Sobic009G164700 Sobic001G542900--Sobic009G164700 Sobic007G176200 Sobic007G176200 Sobic001G542900--Sobic007G176200 Sobic006G126000 Sobic006G126000 Sobic004G226500--Sobic006G126000 Sobic004G226500--Sobic010G040900 Sobic009G117200 Sobic009G117200 Sobic004G226500--Sobic009G117200 Sobic003G096000 Sobic003G096000 Sobic004G226500--Sobic003G096000 Sobic004G226500--Sobic003G326800 Sobic003G428200 Sobic003G428200 Sobic004G226500--Sobic003G428200 Sobic001G350600 Sobic001G350600 Sobic004G226500--Sobic001G350600 Sobic004G226500--Sobic004G335000 Sobic004G030000 Sobic004G030000 Sobic004G226500--Sobic004G030000 Sobic003G348200 Sobic003G348200 Sobic004G153000--Sobic003G348200 Sobic004G153000--Sobic007G003100 Sobic003G109200 Sobic003G109200 Sobic004G153000--Sobic003G109200 Sobic004G358900 Sobic004G358900 Sobic004G153000--Sobic004G358900 Sobic010G277000 Sobic010G277000 Sobic004G153000--Sobic010G277000 Sobic003G125100 Sobic003G125100 Sobic004G153000--Sobic003G125100 Sobic001G107300 Sobic001G107300 Sobic004G153000--Sobic001G107300 Sobic002G087000 Sobic002G087000 Sobic004G153000--Sobic002G087000 Sobic001G205900 Sobic001G205900 Sobic004G153000--Sobic001G205900 Sobic003G326800--Sobic003G096000 Sobic003G326800--Sobic004G226500 Sobic004G056400 Sobic004G056400 Sobic003G326800--Sobic004G056400 Sobic002G186900 Sobic002G186900 Sobic003G326800--Sobic002G186900 Sobic003G340700 Sobic003G340700 Sobic003G326800--Sobic003G340700 Sobic003G326800--Sobic006G126000 Sobic007G150000 Sobic007G150000 Sobic003G326800--Sobic007G150000 Sobic010G101600 Sobic010G101600 Sobic003G326800--Sobic010G101600 Sobic003G326800--Sobic009G164700 Sobic004G039400 Sobic004G039400 Sobic007G003100--Sobic004G039400 Sobic007G048700 Sobic007G048700 Sobic007G003100--Sobic007G048700 Sobic003G167000 Sobic003G167000 Sobic007G003100--Sobic003G167000 Sobic009G112900 Sobic009G112900 Sobic007G003100--Sobic009G112900 Sobic001G443200 Sobic001G443200 Sobic007G003100--Sobic001G443200 Sobic007G003100--Sobic009G206600 Sobic001G060300 Sobic001G060300 Sobic007G003100--Sobic001G060300 Sobic007G003100--Sobic006G203900 Sobic007G003100--Sobic010G040900 Sobic006G114400 Sobic006G114400 Sobic003G009300--Sobic006G114400 Sobic001G077900 Sobic001G077900 Sobic003G009300--Sobic001G077900 Sobic006G232000 Sobic006G232000 Sobic003G009300--Sobic006G232000 Sobic001G220900 Sobic001G220900 Sobic003G009300--Sobic001G220900 Sobic003G009300--Sobic001G443200 Sobic003G009300--Sobic007G176200 Sobic001G109300 Sobic001G109300 Sobic003G009300--Sobic001G109300 Sobic003G009300--Sobic002G141700 Sobic003G009300--Sobic001G444300 Sobic003G252900 Sobic003G252900 Sobic003G312400--Sobic003G252900 Sobic003G410400 Sobic003G410400 Sobic003G312400--Sobic003G410400 Sobic003G319000 Sobic003G319000 Sobic003G312400--Sobic003G319000 Sobic004G168300 Sobic004G168300 Sobic003G312400--Sobic004G168300 Sobic003G092700 Sobic003G092700 Sobic003G312400--Sobic003G092700 Sobic010G168900 Sobic010G168900 Sobic003G312400--Sobic010G168900 Sobic006G129000 Sobic006G129000 Sobic003G312400--Sobic006G129000 Sobic010G059700 Sobic010G059700 Sobic003G312400--Sobic010G059700 Sobic002G297600 Sobic002G297600 Sobic003G312400--Sobic002G297600 Sobic010G040900--Sobic004G039400 Sobic010G040900--Sobic001G443200 Sobic009G191400 Sobic009G191400 Sobic010G040900--Sobic009G191400 Sobic001G008100 Sobic001G008100 Sobic010G040900--Sobic001G008100 Sobic001G178500 Sobic001G178500 Sobic010G040900--Sobic001G178500 Sobic010G040900--Sobic006G126000 Sobic003G261800 Sobic003G261800 Sobic010G040900--Sobic003G261800 Sobic003G135600 Sobic003G135600 Sobic010G040900--Sobic003G135600 Sobic004G344800 Sobic004G344800 Sobic010G040900--Sobic004G344800
Octagon: transcription factors


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