Gene annotation
Transcriptome id Sobic.003G326800.1
Synonym GPDHC1, Sb03g037280
Functional annotation glycerol-3-phosphate dehydrogenase, putative, expressed
UniProt C5XMH4
Pfam PF01210 PF07479
Panther DB PTHR11728 PTHR11728:SF16
NCBI CDD KOG2711; Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase
KEGG Orthology K00006; glycerol-3-phosphate dehydrogenase (NAD+)
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0005975carbohydrate metabolic process GO:0004367glycerol-3-phosphate dehydrogenase [NAD+] activity GO:0009331glycerol-3-phosphate dehydrogenase complex GO:0006072glycerol-3-phosphate metabolic process


Orthologs (automatic annotation)
TAIR AT2G41540 : 6-phosphogluconate dehydrogenase family protein
RAP-DB (Rice) LOC_Os01g58740.1 : glycerol-3-phosphate dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a037857 , Zm00025a026083 , Zm00025a039841
Brachypodium KQK10192 , KQK05607
Barley HORVU3Hr1G078530.2 , HORVU3Hr1G078530.3 , HORVU3Hr1G078530.1 , HORVU3Hr1G078530.6 , HORVU3Hr1G078530.7 , HORVU3Hr1G078530.4 , HORVU3Hr1G078530.5 , HORVU3Hr1G078530.8 , HORVU3Hr1G078530.9 , HORVU3Hr1G104790.8 , HORVU3Hr1G104790.9 , HORVU3Hr1G104790.6 , HORVU3Hr1G104790.7 , HORVU3Hr1G104790.4 , HORVU3Hr1G104790.5 , HORVU3Hr1G104790.2 , HORVU3Hr1G104790.1 , HORVU3Hr1G078530.10 , HORVU3Hr1G104790.10 , HORVU3Hr1G104790.11 , HORVU1Hr1G067480.4 , HORVU1Hr1G067480.1 , HORVU1Hr1G067480.2 , HORVU1Hr1G067480.3 , HORVU3Hr1G104790.3
Wheat TraesCS3B02G521400 , TraesCS3D02G324000 , TraesCS3D02G324000 , TraesCS3D02G473600 , TraesCS3A02G478100 , TraesCS3A02G330600 , TraesCS3A02G330600 , TraesCS1A02G312400 , TraesCS1D02G312600 , TraesCS3B02G360600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G096000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
2 Sobic.004G226500 dehydrogenase, putative, expressed K00001: E1.1.1.1, alcohol dehydrogenase
3 Sobic.004G056400 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
4 Sobic.002G186900 enolase, putative, expressed K01689: ENO, enolase
5 Sobic.003G340700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
6 Sobic.006G126000 26S proteasome non-ATPase regulatory subunit 6, putative, expressed K03037: PSMD6, 26S proteasome regulatory subunit N7
7 Sobic.007G150000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
8 Sobic.010G101600 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
9 Sobic.009G164700 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
10 Sobic.004G257000 transmembrane 9 superfamily member, putative, expressed -
11 Sobic.007G044400 MSP domain containing protein, expressed -
12 Sobic.010G089500 annexin, putative, expressed -
13 Sobic.001G418000 NAD dependent epimerase/dehydratase family domain containing protein, expressed K12450: UDP-glucose 4,6-dehydratase
14 Sobic.009G117200 expressed protein -
15 Sobic.001G392200 CAS1 domain-containing protein 1 precursor, putative, expressed -
16 Sobic.009G043500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sulfite oxidase, putative, expressed K00387: sulfite oxidase
17 Sobic.001G505500 ankyrin repeat domain containing protein, expressed -
18 Sobic.001G031900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
19 Sobic.005G137900 zinc knuckle domain containing protein, expressed -
20 Sobic.001G035400 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A


Gene co-expression network
sample Sobic003G326800 Sobic003G326800 Sobic003G096000 Sobic003G096000 Sobic003G326800--Sobic003G096000 Sobic004G226500 Sobic004G226500 Sobic003G326800--Sobic004G226500 Sobic004G056400 Sobic004G056400 Sobic003G326800--Sobic004G056400 Sobic002G186900 Sobic002G186900 Sobic003G326800--Sobic002G186900 Sobic003G340700 Sobic003G340700 Sobic003G326800--Sobic003G340700 Sobic006G126000 Sobic006G126000 Sobic003G326800--Sobic006G126000 Sobic007G150000 Sobic007G150000 Sobic003G326800--Sobic007G150000 Sobic010G101600 Sobic010G101600 Sobic003G326800--Sobic010G101600 Sobic009G164700 Sobic009G164700 Sobic003G326800--Sobic009G164700 Sobic003G096000--Sobic004G056400 Sobic010G089500 Sobic010G089500 Sobic003G096000--Sobic010G089500 Sobic001G350600 Sobic001G350600 Sobic003G096000--Sobic001G350600 Sobic003G096000--Sobic010G101600 Sobic002G356400 Sobic002G356400 Sobic003G096000--Sobic002G356400 Sobic001G030300 Sobic001G030300 Sobic003G096000--Sobic001G030300 Sobic002G180300 Sobic002G180300 Sobic003G096000--Sobic002G180300 Sobic006G013000 Sobic006G013000 Sobic003G096000--Sobic006G013000 Sobic001G047800 Sobic001G047800 Sobic003G096000--Sobic001G047800 Sobic004G226500--Sobic006G126000 Sobic010G040900 Sobic010G040900 Sobic004G226500--Sobic010G040900 Sobic009G117200 Sobic009G117200 Sobic004G226500--Sobic009G117200 Sobic004G226500--Sobic003G096000 Sobic004G226500--Sobic003G326800 Sobic003G428200 Sobic003G428200 Sobic004G226500--Sobic003G428200 Sobic004G226500--Sobic001G350600 Sobic004G335000 Sobic004G335000 Sobic004G226500--Sobic004G335000 Sobic004G030000 Sobic004G030000 Sobic004G226500--Sobic004G030000 Sobic004G056400--Sobic003G096000 Sobic004G056400--Sobic010G101600 Sobic004G056400--Sobic009G117200 Sobic004G056400--Sobic010G089500 Sobic001G370700 Sobic001G370700 Sobic004G056400--Sobic001G370700 Sobic004G056400--Sobic001G350600 Sobic004G056400--Sobic006G013000 Sobic002G309700 Sobic002G309700 Sobic004G056400--Sobic002G309700 Sobic004G056400--Sobic001G030300 Sobic009G059500 Sobic009G059500 Sobic002G186900--Sobic009G059500 Sobic002G271300 Sobic002G271300 Sobic002G186900--Sobic002G271300 Sobic002G186900--Sobic003G096000 Sobic002G186900--Sobic010G089500 Sobic002G186900--Sobic010G101600 Sobic002G186900--Sobic004G056400 Sobic001G228200 Sobic001G228200 Sobic002G186900--Sobic001G228200 Sobic006G200000 Sobic006G200000 Sobic002G186900--Sobic006G200000 Sobic007G044400 Sobic007G044400 Sobic002G186900--Sobic007G044400 Sobic004G159000 Sobic004G159000 Sobic003G340700--Sobic004G159000 Sobic003G340700--Sobic004G030000 Sobic003G196600 Sobic003G196600 Sobic003G340700--Sobic003G196600 Sobic001G031900 Sobic001G031900 Sobic003G340700--Sobic001G031900 Sobic003G152900 Sobic003G152900 Sobic003G340700--Sobic003G152900 Sobic004G170400 Sobic004G170400 Sobic003G340700--Sobic004G170400 Sobic003G340700--Sobic001G350600 Sobic008G102600 Sobic008G102600 Sobic003G340700--Sobic008G102600 Sobic009G112900 Sobic009G112900 Sobic003G340700--Sobic009G112900 Sobic006G126000--Sobic001G031900 Sobic006G126000--Sobic010G040900 Sobic003G330500 Sobic003G330500 Sobic006G126000--Sobic003G330500 Sobic007G176200 Sobic007G176200 Sobic006G126000--Sobic007G176200 Sobic003G135600 Sobic003G135600 Sobic006G126000--Sobic003G135600 Sobic010G008800 Sobic010G008800 Sobic006G126000--Sobic010G008800 Sobic006G126000--Sobic001G350600 Sobic006G126000--Sobic003G152900 Sobic006G126000--Sobic004G030000 Sobic004G222600 Sobic004G222600 Sobic007G150000--Sobic004G222600 Sobic007G150000--Sobic003G340700 Sobic003G023500 Sobic003G023500 Sobic007G150000--Sobic003G023500 Sobic004G123000 Sobic004G123000 Sobic007G150000--Sobic004G123000 Sobic010G238700 Sobic010G238700 Sobic007G150000--Sobic010G238700 Sobic007G150000--Sobic004G159000 Sobic001G013200 Sobic001G013200 Sobic007G150000--Sobic001G013200 Sobic003G217100 Sobic003G217100 Sobic007G150000--Sobic003G217100 Sobic008G130400 Sobic008G130400 Sobic007G150000--Sobic008G130400 Sobic010G101600--Sobic010G089500 Sobic010G101600--Sobic004G056400 Sobic010G101600--Sobic003G096000 Sobic009G111400 Sobic009G111400 Sobic010G101600--Sobic009G111400 Sobic010G101600--Sobic001G370700 Sobic001G073600 Sobic001G073600 Sobic010G101600--Sobic001G073600 Sobic009G244900 Sobic009G244900 Sobic010G101600--Sobic009G244900 Sobic003G261100 Sobic003G261100 Sobic010G101600--Sobic003G261100 Sobic010G101600--Sobic002G186900 Sobic001G035400 Sobic001G035400 Sobic009G164700--Sobic001G035400 Sobic007G092100 Sobic007G092100 Sobic009G164700--Sobic007G092100 Sobic001G542900 Sobic001G542900 Sobic009G164700--Sobic001G542900 Sobic001G010700 Sobic001G010700 Sobic009G164700--Sobic001G010700 Sobic009G164700--Sobic003G330500 Sobic001G196100 Sobic001G196100 Sobic009G164700--Sobic001G196100 Sobic006G203900 Sobic006G203900 Sobic009G164700--Sobic006G203900 Sobic004G066800 Sobic004G066800 Sobic009G164700--Sobic004G066800 Sobic001G096100 Sobic001G096100 Sobic009G164700--Sobic001G096100
Octagon: transcription factors


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