Gene annotation
Transcriptome id Sobic.001G392200.1
Synonym Sb01g037160
Functional annotation CAS1 domain-containing protein 1 precursor, putative, expressed
UniProt C5X1V9
Pfam PF07779
Panther DB PTHR13533 PTHR13533:SF10
NCBI CDD KOG1699; O-acetyltransferase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G46340 : O-acetyltransferase family protein
RAP-DB (Rice) LOC_Os03g19970.1 : CAS1 domain-containing protein 1 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a052531 , Zm00025a024818
Brachypodium KQK21952 , PNT77527 , PNT77526
Barley HORVU4Hr1G052720.16 , HORVU4Hr1G052720.17 , HORVU4Hr1G052720.14 , HORVU4Hr1G052720.15 , HORVU4Hr1G052720.12 , HORVU4Hr1G052720.13 , HORVU4Hr1G052720.11 , HORVU4Hr1G052720.18 , HORVU4Hr1G052720.19 , HORVU4Hr1G052720.10 , HORVU4Hr1G052720.4 , HORVU4Hr1G052720.5 , HORVU4Hr1G052720.6 , HORVU4Hr1G052720.7 , HORVU4Hr1G052720.1 , HORVU4Hr1G052720.2 , HORVU4Hr1G052720.3 , HORVU4Hr1G052720.8 , HORVU4Hr1G052720.9 , HORVU4Hr1G052720.21 , HORVU4Hr1G052720.20
Wheat TraesCS4A02G124300 , TraesCS4A02G124300 , TraesCS4A02G124300 , TraesCS4D02G181600 , TraesCS4D02G181600 , TraesCS4D02G181600 , TraesCS4D02G181600 , TraesCS4B02G180100 , TraesCS4B02G180100 , TraesCS4B02G180100 , TraesCS4B02G180100 , TraesCS4B02G180100 , TraesCS4B02G180100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G070300 expressed protein -
2 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
3 Sobic.002G232400 clathrin adaptor complex small chain domain containing protein, expressed -
4 Sobic.001G011000 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
5 Sobic.002G153000 oxidoreductase domain protein, putative, expressed -
6 Sobic.010G101600 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
7 Sobic.002G101300 erythronate-4-phosphate dehydrogenase domain containing protein, expressed -
8 Sobic.004G218600 succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed K01900: succinyl-CoA synthetase beta subunit
9 Sobic.002G186900 enolase, putative, expressed K01689: ENO, enolase
10 Sobic.004G307300 expressed protein -
11 Sobic.001G348000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nodulation protein-related, putative, expressed -
12 Sobic.002G268700 hydroxymethylglutaryl-CoA synthase, putative, expressed K01641: hydroxymethylglutaryl-CoA synthase
13 Sobic.001G543400 phosphoglycerate mutase, putative, expressed -
14 Sobic.010G042600 transporter family protein, putative, expressed K15280: solute carrier family 35, member C2
15 Sobic.009G244900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cycloartenol-C-24-methyltransferase 1, putative, expressed K00559: SMT1, sterol 24-C-methyltransferase
16 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
17 Sobic.002G367800 PPR repeat domain containing protein, putative, expressed -
18 Sobic.004G212100 PPR repeat domain containing protein, putative, expressed -
19 Sobic.007G048700 stomatin-like protein 2, putative, expressed -
20 Sobic.010G178600 coatomer subunit beta, putative, expressed K17302: COPB2, coatomer subunit beta'


Gene co-expression network
sample Sobic001G392200 Sobic001G392200 Sobic002G070300 Sobic002G070300 Sobic001G392200--Sobic002G070300 Sobic009G041800 Sobic009G041800 Sobic001G392200--Sobic009G041800 Sobic002G232400 Sobic002G232400 Sobic001G392200--Sobic002G232400 Sobic001G011000 Sobic001G011000 Sobic001G392200--Sobic001G011000 Sobic002G153000 Sobic002G153000 Sobic001G392200--Sobic002G153000 Sobic010G101600 Sobic010G101600 Sobic001G392200--Sobic010G101600 Sobic002G101300 Sobic002G101300 Sobic001G392200--Sobic002G101300 Sobic004G218600 Sobic004G218600 Sobic001G392200--Sobic004G218600 Sobic002G186900 Sobic002G186900 Sobic001G392200--Sobic002G186900 Sobic008G132200 Sobic008G132200 Sobic002G070300--Sobic008G132200 Sobic007G118500 Sobic007G118500 Sobic002G070300--Sobic007G118500 Sobic001G543400 Sobic001G543400 Sobic002G070300--Sobic001G543400 Sobic003G260600 Sobic003G260600 Sobic002G070300--Sobic003G260600 Sobic002G070300--Sobic001G011000 Sobic003G159700 Sobic003G159700 Sobic002G070300--Sobic003G159700 Sobic002G154800 Sobic002G154800 Sobic002G070300--Sobic002G154800 Sobic001G378800 Sobic001G378800 Sobic002G070300--Sobic001G378800 Sobic002G070300--Sobic002G153000 Sobic003G130000 Sobic003G130000 Sobic009G041800--Sobic003G130000 Sobic004G212100 Sobic004G212100 Sobic009G041800--Sobic004G212100 Sobic009G041800--Sobic001G011000 Sobic002G367800 Sobic002G367800 Sobic009G041800--Sobic002G367800 Sobic001G167500 Sobic001G167500 Sobic009G041800--Sobic001G167500 Sobic001G413100 Sobic001G413100 Sobic009G041800--Sobic001G413100 Sobic001G268300 Sobic001G268300 Sobic009G041800--Sobic001G268300 Sobic003G113400 Sobic003G113400 Sobic009G041800--Sobic003G113400 Sobic010G134100 Sobic010G134100 Sobic009G041800--Sobic010G134100 Sobic002G232400--Sobic002G153000 Sobic002G090500 Sobic002G090500 Sobic002G232400--Sobic002G090500 Sobic001G352800 Sobic001G352800 Sobic002G232400--Sobic001G352800 Sobic001G192700 Sobic001G192700 Sobic002G232400--Sobic001G192700 Sobic002G268700 Sobic002G268700 Sobic002G232400--Sobic002G268700 Sobic010G002800 Sobic010G002800 Sobic002G232400--Sobic010G002800 Sobic002G232400--Sobic004G218600 Sobic008G084100 Sobic008G084100 Sobic002G232400--Sobic008G084100 Sobic010G018500 Sobic010G018500 Sobic002G232400--Sobic010G018500 Sobic001G011000--Sobic004G212100 Sobic001G011000--Sobic002G367800 Sobic002G071100 Sobic002G071100 Sobic001G011000--Sobic002G071100 Sobic004G356300 Sobic004G356300 Sobic001G011000--Sobic004G356300 Sobic001G011000--Sobic002G070300 Sobic001G011000--Sobic009G041800 Sobic002G281600 Sobic002G281600 Sobic001G011000--Sobic002G281600 Sobic001G011000--Sobic002G153000 Sobic008G057900 Sobic008G057900 Sobic001G011000--Sobic008G057900 Sobic002G153000--Sobic002G090500 Sobic002G153000--Sobic001G543400 Sobic002G153000--Sobic004G218600 Sobic002G153000--Sobic002G232400 Sobic002G153000--Sobic002G070300 Sobic002G153000--Sobic008G057900 Sobic004G261800 Sobic004G261800 Sobic002G153000--Sobic004G261800 Sobic002G153000--Sobic001G011000 Sobic002G153000--Sobic001G352800 Sobic010G089500 Sobic010G089500 Sobic010G101600--Sobic010G089500 Sobic004G056400 Sobic004G056400 Sobic010G101600--Sobic004G056400 Sobic003G096000 Sobic003G096000 Sobic010G101600--Sobic003G096000 Sobic009G111400 Sobic009G111400 Sobic010G101600--Sobic009G111400 Sobic001G370700 Sobic001G370700 Sobic010G101600--Sobic001G370700 Sobic001G073600 Sobic001G073600 Sobic010G101600--Sobic001G073600 Sobic009G244900 Sobic009G244900 Sobic010G101600--Sobic009G244900 Sobic003G261100 Sobic003G261100 Sobic010G101600--Sobic003G261100 Sobic010G101600--Sobic002G186900 Sobic002G101300--Sobic010G101600 Sobic002G101300--Sobic010G018500 Sobic002G368600 Sobic002G368600 Sobic002G101300--Sobic002G368600 Sobic002G101300--Sobic003G261100 Sobic003G045600 Sobic003G045600 Sobic002G101300--Sobic003G045600 Sobic006G259401 Sobic006G259401 Sobic002G101300--Sobic006G259401 Sobic002G271300 Sobic002G271300 Sobic002G101300--Sobic002G271300 Sobic004G257000 Sobic004G257000 Sobic002G101300--Sobic004G257000 Sobic002G101300--Sobic001G392200 Sobic004G218600--Sobic002G153000 Sobic001G457000 Sobic001G457000 Sobic004G218600--Sobic001G457000 Sobic002G352200 Sobic002G352200 Sobic004G218600--Sobic002G352200 Sobic004G218600--Sobic001G543400 Sobic004G218600--Sobic003G260600 Sobic004G218600--Sobic002G070300 Sobic002G255400 Sobic002G255400 Sobic004G218600--Sobic002G255400 Sobic003G049200 Sobic003G049200 Sobic004G218600--Sobic003G049200 Sobic007G119600 Sobic007G119600 Sobic004G218600--Sobic007G119600 Sobic009G059500 Sobic009G059500 Sobic002G186900--Sobic009G059500 Sobic002G186900--Sobic002G271300 Sobic002G186900--Sobic003G096000 Sobic002G186900--Sobic010G089500 Sobic002G186900--Sobic010G101600 Sobic002G186900--Sobic004G056400 Sobic001G228200 Sobic001G228200 Sobic002G186900--Sobic001G228200 Sobic006G200000 Sobic006G200000 Sobic002G186900--Sobic006G200000 Sobic007G044400 Sobic007G044400 Sobic002G186900--Sobic007G044400
Octagon: transcription factors


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