Gene annotation
Transcriptome id Sobic.002G268700.1
Synonym HMGS, Sb02g030270, EMB2778, MVA1, FKP1
Functional annotation hydroxymethylglutaryl-CoA synthase, putative, expressed
UniProt A0A1B6QDN8
Pfam PF01154 PF08540
Panther DB PTHR11877 PTHR11877:SF18
NCBI CDD -
KEGG Orthology K01641; hydroxymethylglutaryl-CoA synthase
Gene Ontology GO:0008299; isoprenoid biosynthetic process GO:0004421hydroxymethylglutaryl-CoA synthase activity


Orthologs (automatic annotation)
TAIR AT4G11820 : hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase
RAP-DB (Rice) LOC_Os09g34960.1 : hydroxymethylglutaryl-CoA synthase, putative, expressed
MaizeGDB (Corn) Zm00025a047699 , Zm00025a014379 , Zm00025a053518 , Zm00025a000254
Brachypodium KQK23961 , KQK23962 , KQJ99251 , KQJ99250
Barley HORVU4Hr1G085750.15 , HORVU4Hr1G085750.14 , HORVU4Hr1G085750.17 , HORVU4Hr1G085750.16 , HORVU4Hr1G085750.11 , HORVU4Hr1G085750.10 , HORVU4Hr1G085750.12 , HORVU7Hr1G056590.8 , HORVU7Hr1G056590.10 , HORVU4Hr1G085750.8 , HORVU4Hr1G085750.22 , HORVU4Hr1G085750.23 , HORVU4Hr1G085750.24 , HORVU7Hr1G056590.7 , HORVU7Hr1G056590.3 , HORVU4Hr1G085750.5 , HORVU7Hr1G056590.5 , HORVU4Hr1G085750.9 , HORVU7Hr1G056590.9 , HORVU7Hr1G056590.6 , HORVU4Hr1G085750.1 , HORVU7Hr1G056590.1 , HORVU7Hr1G056590.2 , HORVU4Hr1G085750.2 , HORVU7Hr1G056590.4 , HORVU4Hr1G085750.4 , HORVU4Hr1G085750.7 , HORVU4Hr1G085750.6
Wheat TraesCS4B02G353100 , TraesCS7B02G167300 , TraesCS7B02G167300 , TraesCS7B02G167300 , TraesCS7A02G269100 , TraesCS7A02G269100 , TraesCS4D02G347100 , TraesCS5A02G522100 , TraesCS7D02G269600 , TraesCS7D02G269600
Populus -


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cDNA sequences
Sobic.002G268700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G232400 clathrin adaptor complex small chain domain containing protein, expressed -
2 Sobic.001G348000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nodulation protein-related, putative, expressed -
3 Sobic.004G231200 amine oxidase, putative, expressed K11450: KDM1A, AOF2, [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase
4 Sobic.004G069400 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
5 Sobic.007G048700 stomatin-like protein 2, putative, expressed -
6 Sobic.010G080900 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
7 Sobic.002G070300 expressed protein -
8 Sobic.004G064600 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
9 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -
10 Sobic.001G082800 ORC5 - Putative origin recognition complex subunit 5, expressed K02607: origin recognition complex subunit 5
11 Sobic.008G132200 tetratricopeptide repeat domain containing protein, expressed -
12 Sobic.002G153000 oxidoreductase domain protein, putative, expressed -
13 Sobic.001G140700 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
14 Sobic.002G308000 powdery mildew resistant protein 5, putative, expressed -
15 Sobic.004G007700 pentatricopeptide, putative, expressed -
16 Sobic.005G210500 - K10901: BLM, RECQL3, bloom syndrome protein
17 Sobic.001G192700 major facilitator superfamily domain-containing protein 5, putative, expressed -
18 Sobic.003G159700 ATKINESIN-13A/KINESIN-13A, putative, expressed K10393: KIF2_24, kinesin family member 2/24
19 Sobic.009G244900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cycloartenol-C-24-methyltransferase 1, putative, expressed K00559: SMT1, sterol 24-C-methyltransferase
20 Sobic.006G271000 mis12 protein, expressed -


Gene co-expression network
sample Sobic002G268700 Sobic002G268700 Sobic002G232400 Sobic002G232400 Sobic002G268700--Sobic002G232400 Sobic001G348000 Sobic001G348000 Sobic002G268700--Sobic001G348000 Sobic004G231200 Sobic004G231200 Sobic002G268700--Sobic004G231200 Sobic004G069400 Sobic004G069400 Sobic002G268700--Sobic004G069400 Sobic007G048700 Sobic007G048700 Sobic002G268700--Sobic007G048700 Sobic010G080900 Sobic010G080900 Sobic002G268700--Sobic010G080900 Sobic002G070300 Sobic002G070300 Sobic002G268700--Sobic002G070300 Sobic004G064600 Sobic004G064600 Sobic002G268700--Sobic004G064600 Sobic002G426100 Sobic002G426100 Sobic002G268700--Sobic002G426100 Sobic002G153000 Sobic002G153000 Sobic002G232400--Sobic002G153000 Sobic002G090500 Sobic002G090500 Sobic002G232400--Sobic002G090500 Sobic001G352800 Sobic001G352800 Sobic002G232400--Sobic001G352800 Sobic001G192700 Sobic001G192700 Sobic002G232400--Sobic001G192700 Sobic002G232400--Sobic002G268700 Sobic010G002800 Sobic010G002800 Sobic002G232400--Sobic010G002800 Sobic004G218600 Sobic004G218600 Sobic002G232400--Sobic004G218600 Sobic008G084100 Sobic008G084100 Sobic002G232400--Sobic008G084100 Sobic010G018500 Sobic010G018500 Sobic002G232400--Sobic010G018500 Sobic001G348000--Sobic002G268700 Sobic001G348000--Sobic001G192700 Sobic001G348000--Sobic007G048700 Sobic008G132200 Sobic008G132200 Sobic001G348000--Sobic008G132200 Sobic001G347700 Sobic001G347700 Sobic001G348000--Sobic001G347700 Sobic005G210500 Sobic005G210500 Sobic001G348000--Sobic005G210500 Sobic001G348000--Sobic002G232400 Sobic006G271000 Sobic006G271000 Sobic001G348000--Sobic006G271000 Sobic001G286100 Sobic001G286100 Sobic001G348000--Sobic001G286100 Sobic004G231200--Sobic002G268700 Sobic009G049200 Sobic009G049200 Sobic004G231200--Sobic009G049200 Sobic004G231200--Sobic004G064600 Sobic004G231200--Sobic002G426100 Sobic004G034300 Sobic004G034300 Sobic004G231200--Sobic004G034300 Sobic001G140700 Sobic001G140700 Sobic004G231200--Sobic001G140700 Sobic006G265600 Sobic006G265600 Sobic004G231200--Sobic006G265600 Sobic001G522000 Sobic001G522000 Sobic004G231200--Sobic001G522000 Sobic007G173000 Sobic007G173000 Sobic004G231200--Sobic007G173000 Sobic004G069400--Sobic001G286100 Sobic004G069400--Sobic001G140700 Sobic004G069400--Sobic002G268700 Sobic001G413100 Sobic001G413100 Sobic004G069400--Sobic001G413100 Sobic004G069400--Sobic002G232400 Sobic002G304400 Sobic002G304400 Sobic004G069400--Sobic002G304400 Sobic009G220000 Sobic009G220000 Sobic004G069400--Sobic009G220000 Sobic006G119300 Sobic006G119300 Sobic004G069400--Sobic006G119300 Sobic009G244900 Sobic009G244900 Sobic004G069400--Sobic009G244900 Sobic003G167000 Sobic003G167000 Sobic007G048700--Sobic003G167000 Sobic007G048700--Sobic002G070300 Sobic001G035400 Sobic001G035400 Sobic007G048700--Sobic001G035400 Sobic007G048700--Sobic009G220000 Sobic007G003100 Sobic007G003100 Sobic007G048700--Sobic007G003100 Sobic007G048700--Sobic001G347700 Sobic007G048700--Sobic008G132200 Sobic001G343000 Sobic001G343000 Sobic007G048700--Sobic001G343000 Sobic001G013200 Sobic001G013200 Sobic007G048700--Sobic001G013200 Sobic002G308000 Sobic002G308000 Sobic010G080900--Sobic002G308000 Sobic010G188900 Sobic010G188900 Sobic010G080900--Sobic010G188900 Sobic007G140100 Sobic007G140100 Sobic010G080900--Sobic007G140100 Sobic010G080900--Sobic008G132200 Sobic010G080900--Sobic007G048700 Sobic010G080900--Sobic002G268700 Sobic004G007700 Sobic004G007700 Sobic010G080900--Sobic004G007700 Sobic010G080900--Sobic001G343000 Sobic010G080900--Sobic004G064600 Sobic002G070300--Sobic008G132200 Sobic007G118500 Sobic007G118500 Sobic002G070300--Sobic007G118500 Sobic001G543400 Sobic001G543400 Sobic002G070300--Sobic001G543400 Sobic003G260600 Sobic003G260600 Sobic002G070300--Sobic003G260600 Sobic001G011000 Sobic001G011000 Sobic002G070300--Sobic001G011000 Sobic003G159700 Sobic003G159700 Sobic002G070300--Sobic003G159700 Sobic002G154800 Sobic002G154800 Sobic002G070300--Sobic002G154800 Sobic001G378800 Sobic001G378800 Sobic002G070300--Sobic001G378800 Sobic002G070300--Sobic002G153000 Sobic006G095000 Sobic006G095000 Sobic004G064600--Sobic006G095000 Sobic002G192900 Sobic002G192900 Sobic004G064600--Sobic002G192900 Sobic008G047500 Sobic008G047500 Sobic004G064600--Sobic008G047500 Sobic001G323400 Sobic001G323400 Sobic004G064600--Sobic001G323400 Sobic001G082800 Sobic001G082800 Sobic004G064600--Sobic001G082800 Sobic002G390800 Sobic002G390800 Sobic004G064600--Sobic002G390800 Sobic008G004900 Sobic008G004900 Sobic004G064600--Sobic008G004900 Sobic007G186400 Sobic007G186400 Sobic004G064600--Sobic007G186400 Sobic004G064600--Sobic002G308000 Sobic009G120400 Sobic009G120400 Sobic002G426100--Sobic009G120400 Sobic008G111600 Sobic008G111600 Sobic002G426100--Sobic008G111600 Sobic006G181800 Sobic006G181800 Sobic002G426100--Sobic006G181800 Sobic002G078100 Sobic002G078100 Sobic002G426100--Sobic002G078100 Sobic002G043000 Sobic002G043000 Sobic002G426100--Sobic002G043000 Sobic006G017800 Sobic006G017800 Sobic002G426100--Sobic006G017800 Sobic002G066800 Sobic002G066800 Sobic002G426100--Sobic002G066800 Sobic002G426100--Sobic007G186400 Sobic004G129500 Sobic004G129500 Sobic002G426100--Sobic004G129500
Octagon: transcription factors


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