Gene annotation
Transcriptome id Sobic.009G244900.2,Sobic.009G244900.3,Sobic.009G244900.1
Synonym SMT1, CPH, Sb09g029600
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
cycloartenol-C-24-methyltransferase 1, putative, expressed
UniProt C5YWF1
Pfam PF08241 PF08498
Panther DB PTHR10108 PTHR10108:SF908
NCBI CDD KOG1269; SAM-dependent methyltransferases
KEGG Orthology K00559; SMT1, sterol 24-C-methyltransferase
Gene Ontology GO:0008168; methyltransferase activity GO:0008152metabolic process GO:0006694steroid biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G13710 : sterol methyltransferase 1
RAP-DB (Rice) LOC_Os07g10600.1 : cycloartenol-C-24-methyltransferase 1, putative, expressed
MaizeGDB (Corn) Zm00025a045363
Brachypodium KQK01130 , KQK20403 , KQK01129
Barley HORVU4Hr1G084000.6 , HORVU4Hr1G084000.7 , HORVU4Hr1G084000.4 , HORVU4Hr1G084000.5 , HORVU4Hr1G084000.2 , HORVU4Hr1G084000.3 , HORVU4Hr1G084000.1 , HORVU4Hr1G084000.8
Wheat TraesCS4B02G340700 , TraesCS4D02G336800 , TraesCS5A02G510200 , TraesCS5A02G510200
Populus -


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cDNA sequences
Sobic.009G244900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G192500 nodulin, putative, expressed -
2 Sobic.002G201700 phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
3 Sobic.004G261800 sugar-responsive gene(PubMedID : 25496467)@pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
4 Sobic.010G101600 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
5 Sobic.002G167100 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
6 Sobic.002G153000 oxidoreductase domain protein, putative, expressed -
7 Sobic.001G135200 OB-fold nucleic acid binding domain containing protein, putative, expressed K15365: RecQ-mediated genome instability protein 2
8 Sobic.010G250300 ANTH/ENTH domain containing protein, putative, expressed -
9 Sobic.004G069400 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
10 Sobic.003G013700 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
11 Sobic.001G543400 phosphoglycerate mutase, putative, expressed -
12 Sobic.002G232400 clathrin adaptor complex small chain domain containing protein, expressed -
13 Sobic.009G025700 cycloeucalenol cycloisomerase, putative, expressed K08246: cycloeucalenol cycloisomerase
14 Sobic.002G352200 succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed K01899: succinyl-CoA synthetase alpha subunit
15 Sobic.001G286100 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
16 Sobic.010G253200 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
17 Sobic.009G103400 - -
18 Sobic.001G239900 amino acid permease, putative, expressed -
19 Sobic.002G101300 erythronate-4-phosphate dehydrogenase domain containing protein, expressed -
20 Sobic.008G017700 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24


Gene co-expression network
sample Sobic009G244900 Sobic009G244900 Sobic007G192500 Sobic007G192500 Sobic009G244900--Sobic007G192500 Sobic002G201700 Sobic002G201700 Sobic009G244900--Sobic002G201700 Sobic004G261800 Sobic004G261800 Sobic009G244900--Sobic004G261800 Sobic010G101600 Sobic010G101600 Sobic009G244900--Sobic010G101600 Sobic002G167100 Sobic002G167100 Sobic009G244900--Sobic002G167100 Sobic002G153000 Sobic002G153000 Sobic009G244900--Sobic002G153000 Sobic001G135200 Sobic001G135200 Sobic009G244900--Sobic001G135200 Sobic010G250300 Sobic010G250300 Sobic009G244900--Sobic010G250300 Sobic004G069400 Sobic004G069400 Sobic009G244900--Sobic004G069400 Sobic007G192500--Sobic002G201700 Sobic007G192500--Sobic002G167100 Sobic002G309100 Sobic002G309100 Sobic007G192500--Sobic002G309100 Sobic007G192500--Sobic009G244900 Sobic003G022000 Sobic003G022000 Sobic007G192500--Sobic003G022000 Sobic010G062900 Sobic010G062900 Sobic007G192500--Sobic010G062900 Sobic009G025700 Sobic009G025700 Sobic007G192500--Sobic009G025700 Sobic001G499500 Sobic001G499500 Sobic007G192500--Sobic001G499500 Sobic001G239900 Sobic001G239900 Sobic007G192500--Sobic001G239900 Sobic002G201700--Sobic002G167100 Sobic002G201700--Sobic009G025700 Sobic002G201700--Sobic007G192500 Sobic003G013700 Sobic003G013700 Sobic002G201700--Sobic003G013700 Sobic002G201700--Sobic004G261800 Sobic009G042000 Sobic009G042000 Sobic002G201700--Sobic009G042000 Sobic002G201700--Sobic003G022000 Sobic010G253200 Sobic010G253200 Sobic002G201700--Sobic010G253200 Sobic004G284800 Sobic004G284800 Sobic002G201700--Sobic004G284800 Sobic004G261800--Sobic003G013700 Sobic002G186200 Sobic002G186200 Sobic004G261800--Sobic002G186200 Sobic007G014700 Sobic007G014700 Sobic004G261800--Sobic007G014700 Sobic004G261800--Sobic010G253200 Sobic002G420100 Sobic002G420100 Sobic004G261800--Sobic002G420100 Sobic004G261800--Sobic002G201700 Sobic001G303900 Sobic001G303900 Sobic004G261800--Sobic001G303900 Sobic003G423700 Sobic003G423700 Sobic004G261800--Sobic003G423700 Sobic008G156600 Sobic008G156600 Sobic004G261800--Sobic008G156600 Sobic010G089500 Sobic010G089500 Sobic010G101600--Sobic010G089500 Sobic004G056400 Sobic004G056400 Sobic010G101600--Sobic004G056400 Sobic003G096000 Sobic003G096000 Sobic010G101600--Sobic003G096000 Sobic009G111400 Sobic009G111400 Sobic010G101600--Sobic009G111400 Sobic001G370700 Sobic001G370700 Sobic010G101600--Sobic001G370700 Sobic001G073600 Sobic001G073600 Sobic010G101600--Sobic001G073600 Sobic010G101600--Sobic009G244900 Sobic003G261100 Sobic003G261100 Sobic010G101600--Sobic003G261100 Sobic002G186900 Sobic002G186900 Sobic010G101600--Sobic002G186900 Sobic002G167100--Sobic002G201700 Sobic002G167100--Sobic003G022000 Sobic002G167100--Sobic009G025700 Sobic003G372200 Sobic003G372200 Sobic002G167100--Sobic003G372200 Sobic002G167100--Sobic007G192500 Sobic001G385000 Sobic001G385000 Sobic002G167100--Sobic001G385000 Sobic007G086600 Sobic007G086600 Sobic002G167100--Sobic007G086600 Sobic002G167100--Sobic009G042000 Sobic010G086300 Sobic010G086300 Sobic002G167100--Sobic010G086300 Sobic002G090500 Sobic002G090500 Sobic002G153000--Sobic002G090500 Sobic001G543400 Sobic001G543400 Sobic002G153000--Sobic001G543400 Sobic004G218600 Sobic004G218600 Sobic002G153000--Sobic004G218600 Sobic002G232400 Sobic002G232400 Sobic002G153000--Sobic002G232400 Sobic002G070300 Sobic002G070300 Sobic002G153000--Sobic002G070300 Sobic008G057900 Sobic008G057900 Sobic002G153000--Sobic008G057900 Sobic002G153000--Sobic004G261800 Sobic001G011000 Sobic001G011000 Sobic002G153000--Sobic001G011000 Sobic001G352800 Sobic001G352800 Sobic002G153000--Sobic001G352800 Sobic003G044700 Sobic003G044700 Sobic001G135200--Sobic003G044700 Sobic001G192700 Sobic001G192700 Sobic001G135200--Sobic001G192700 Sobic003G016300 Sobic003G016300 Sobic001G135200--Sobic003G016300 Sobic001G135200--Sobic004G261800 Sobic002G352200 Sobic002G352200 Sobic001G135200--Sobic002G352200 Sobic004G100100 Sobic004G100100 Sobic001G135200--Sobic004G100100 Sobic001G135200--Sobic009G244900 Sobic005G185200 Sobic005G185200 Sobic001G135200--Sobic005G185200 Sobic006G271000 Sobic006G271000 Sobic001G135200--Sobic006G271000 Sobic007G127500 Sobic007G127500 Sobic010G250300--Sobic007G127500 Sobic010G250300--Sobic004G261800 Sobic008G023300 Sobic008G023300 Sobic010G250300--Sobic008G023300 Sobic010G250300--Sobic003G013700 Sobic003G187700 Sobic003G187700 Sobic010G250300--Sobic003G187700 Sobic010G250300--Sobic001G303900 Sobic007G212100 Sobic007G212100 Sobic010G250300--Sobic007G212100 Sobic001G342101 Sobic001G342101 Sobic010G250300--Sobic001G342101 Sobic006G256000 Sobic006G256000 Sobic010G250300--Sobic006G256000 Sobic001G286100 Sobic001G286100 Sobic004G069400--Sobic001G286100 Sobic001G140700 Sobic001G140700 Sobic004G069400--Sobic001G140700 Sobic002G268700 Sobic002G268700 Sobic004G069400--Sobic002G268700 Sobic001G413100 Sobic001G413100 Sobic004G069400--Sobic001G413100 Sobic004G069400--Sobic002G232400 Sobic002G304400 Sobic002G304400 Sobic004G069400--Sobic002G304400 Sobic009G220000 Sobic009G220000 Sobic004G069400--Sobic009G220000 Sobic006G119300 Sobic006G119300 Sobic004G069400--Sobic006G119300 Sobic004G069400--Sobic009G244900
Octagon: transcription factors


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