Gene annotation
Transcriptome id Sobic.001G135200.1
Synonym Sb01g011820
Functional annotation OB-fold nucleic acid binding domain containing protein, putative, expressed
UniProt A0A1B6QIT7
Pfam PF16100
Panther DB PTHR33962 PTHR33962:SF1
NCBI CDD -
KEGG Orthology K15365; RecQ-mediated genome instability protein 2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G08390 : -
RAP-DB (Rice) LOC_Os03g47990.1 : OB-fold nucleic acid binding domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a007619
Brachypodium -
Barley HORVU7Hr1G043610.1 , HORVU4Hr1G004130.10 , HORVU4Hr1G004130.11 , HORVU4Hr1G004130.12 , HORVU2Hr1G008010.1 , HORVU4Hr1G004130.2 , HORVU4Hr1G004130.3 , HORVU4Hr1G004130.1 , HORVU4Hr1G004130.6 , HORVU4Hr1G004130.7 , HORVU4Hr1G004130.4 , HORVU4Hr1G004130.5 , HORVU4Hr1G004130.8 , HORVU4Hr1G004130.9 , HORVU0Hr1G001810.1 , HORVU5Hr1G008040.1 , HORVU1Hr1G013540.1
Wheat TraesCS4A02G286100 , TraesCS4B02G027500 , TraesCS4D02G025200 , TraesCS4D02G025200 , TraesCS4B02G027700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G044700 zinc finger family protein, putative, expressed -
2 Sobic.001G192700 major facilitator superfamily domain-containing protein 5, putative, expressed -
3 Sobic.003G016300 SFT2, putative, expressed -
4 Sobic.004G261800 sugar-responsive gene(PubMedID : 25496467)@pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
5 Sobic.002G352200 succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed K01899: succinyl-CoA synthetase alpha subunit
6 Sobic.004G100100 expressed protein -
7 Sobic.009G244900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cycloartenol-C-24-methyltransferase 1, putative, expressed K00559: SMT1, sterol 24-C-methyltransferase
8 Sobic.005G185200 - -
9 Sobic.006G271000 mis12 protein, expressed -
10 Sobic.002G124900 expressed protein K02138: ATPeF0D, ATP5H, F-type H+-transporting ATPase subunit d
11 Sobic.001G286100 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
12 Sobic.007G014700 Fructokinase-2 (Zm)(PubMedID : 27208977)@kinase, pfkB family, putative, expressed K00847: E2.7.1.4, fructokinase
13 Sobic.002G222200 OsPDIL2-3 protein disulfide isomerase PDIL2-3, expressed K09584: PDIA6, protein disulfide-isomerase A6
14 Sobic.003G013700 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
15 Sobic.002G246800 acetyltransferase, GNAT family, putative, expressed K00621: GNPNAT1, glucosamine-phosphate N-acetyltransferase
16 Sobic.010G231700 expressed protein -
17 Sobic.008G149500 expressed protein -
18 Sobic.004G069400 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
19 Sobic.003G284100 expressed protein -
20 Sobic.009G209001 - -


Gene co-expression network
sample Sobic001G135200 Sobic001G135200 Sobic003G044700 Sobic003G044700 Sobic001G135200--Sobic003G044700 Sobic001G192700 Sobic001G192700 Sobic001G135200--Sobic001G192700 Sobic003G016300 Sobic003G016300 Sobic001G135200--Sobic003G016300 Sobic004G261800 Sobic004G261800 Sobic001G135200--Sobic004G261800 Sobic002G352200 Sobic002G352200 Sobic001G135200--Sobic002G352200 Sobic004G100100 Sobic004G100100 Sobic001G135200--Sobic004G100100 Sobic009G244900 Sobic009G244900 Sobic001G135200--Sobic009G244900 Sobic005G185200 Sobic005G185200 Sobic001G135200--Sobic005G185200 Sobic006G271000 Sobic006G271000 Sobic001G135200--Sobic006G271000 Sobic003G044700--Sobic001G135200 Sobic003G044700--Sobic005G185200 Sobic003G074900 Sobic003G074900 Sobic003G044700--Sobic003G074900 Sobic006G118400 Sobic006G118400 Sobic003G044700--Sobic006G118400 Sobic002G246800 Sobic002G246800 Sobic003G044700--Sobic002G246800 Sobic003G335300 Sobic003G335300 Sobic003G044700--Sobic003G335300 Sobic003G044700--Sobic003G016300 Sobic003G044700--Sobic001G192700 Sobic010G216400 Sobic010G216400 Sobic003G044700--Sobic010G216400 Sobic001G219800 Sobic001G219800 Sobic001G192700--Sobic001G219800 Sobic001G192700--Sobic003G016300 Sobic001G352800 Sobic001G352800 Sobic001G192700--Sobic001G352800 Sobic002G232400 Sobic002G232400 Sobic001G192700--Sobic002G232400 Sobic001G192700--Sobic001G135200 Sobic001G348000 Sobic001G348000 Sobic001G192700--Sobic001G348000 Sobic004G117400 Sobic004G117400 Sobic001G192700--Sobic004G117400 Sobic001G091701 Sobic001G091701 Sobic001G192700--Sobic001G091701 Sobic002G387800 Sobic002G387800 Sobic001G192700--Sobic002G387800 Sobic003G016300--Sobic002G352200 Sobic002G217500 Sobic002G217500 Sobic003G016300--Sobic002G217500 Sobic003G016300--Sobic001G192700 Sobic003G016300--Sobic001G219800 Sobic008G018300 Sobic008G018300 Sobic003G016300--Sobic008G018300 Sobic006G203900 Sobic006G203900 Sobic003G016300--Sobic006G203900 Sobic002G255400 Sobic002G255400 Sobic003G016300--Sobic002G255400 Sobic009G211900 Sobic009G211900 Sobic003G016300--Sobic009G211900 Sobic002G420600 Sobic002G420600 Sobic003G016300--Sobic002G420600 Sobic003G013700 Sobic003G013700 Sobic004G261800--Sobic003G013700 Sobic002G186200 Sobic002G186200 Sobic004G261800--Sobic002G186200 Sobic007G014700 Sobic007G014700 Sobic004G261800--Sobic007G014700 Sobic010G253200 Sobic010G253200 Sobic004G261800--Sobic010G253200 Sobic002G420100 Sobic002G420100 Sobic004G261800--Sobic002G420100 Sobic002G201700 Sobic002G201700 Sobic004G261800--Sobic002G201700 Sobic001G303900 Sobic001G303900 Sobic004G261800--Sobic001G303900 Sobic003G423700 Sobic003G423700 Sobic004G261800--Sobic003G423700 Sobic008G156600 Sobic008G156600 Sobic004G261800--Sobic008G156600 Sobic002G352200--Sobic002G420600 Sobic002G352200--Sobic003G016300 Sobic002G352200--Sobic008G018300 Sobic002G352200--Sobic002G255400 Sobic004G173700 Sobic004G173700 Sobic002G352200--Sobic004G173700 Sobic003G260600 Sobic003G260600 Sobic002G352200--Sobic003G260600 Sobic009G224400 Sobic009G224400 Sobic002G352200--Sobic009G224400 Sobic002G124900 Sobic002G124900 Sobic002G352200--Sobic002G124900 Sobic001G073600 Sobic001G073600 Sobic002G352200--Sobic001G073600 Sobic004G100100--Sobic003G260600 Sobic004G100100--Sobic002G255400 Sobic003G284100 Sobic003G284100 Sobic004G100100--Sobic003G284100 Sobic004G100100--Sobic007G014700 Sobic001G282200 Sobic001G282200 Sobic004G100100--Sobic001G282200 Sobic006G153200 Sobic006G153200 Sobic004G100100--Sobic006G153200 Sobic004G100100--Sobic008G018300 Sobic004G100100--Sobic003G013700 Sobic001G309200 Sobic001G309200 Sobic004G100100--Sobic001G309200 Sobic007G192500 Sobic007G192500 Sobic009G244900--Sobic007G192500 Sobic009G244900--Sobic002G201700 Sobic009G244900--Sobic004G261800 Sobic010G101600 Sobic010G101600 Sobic009G244900--Sobic010G101600 Sobic002G167100 Sobic002G167100 Sobic009G244900--Sobic002G167100 Sobic002G153000 Sobic002G153000 Sobic009G244900--Sobic002G153000 Sobic009G244900--Sobic001G135200 Sobic010G250300 Sobic010G250300 Sobic009G244900--Sobic010G250300 Sobic004G069400 Sobic004G069400 Sobic009G244900--Sobic004G069400 Sobic005G185200--Sobic003G044700 Sobic005G185200--Sobic001G135200 Sobic001G188000 Sobic001G188000 Sobic005G185200--Sobic001G188000 Sobic001G203800 Sobic001G203800 Sobic005G185200--Sobic001G203800 Sobic001G528100 Sobic001G528100 Sobic005G185200--Sobic001G528100 Sobic002G037600 Sobic002G037600 Sobic005G185200--Sobic002G037600 Sobic005G185200--Sobic003G284100 Sobic004G328100 Sobic004G328100 Sobic005G185200--Sobic004G328100 Sobic005G185200--Sobic003G335300 Sobic006G271000--Sobic001G352800 Sobic002G153400 Sobic002G153400 Sobic006G271000--Sobic002G153400 Sobic009G220000 Sobic009G220000 Sobic006G271000--Sobic009G220000 Sobic006G271000--Sobic001G135200 Sobic006G271000--Sobic001G192700 Sobic001G286100 Sobic001G286100 Sobic006G271000--Sobic001G286100 Sobic010G002800 Sobic010G002800 Sobic006G271000--Sobic010G002800 Sobic006G271000--Sobic001G348000 Sobic005G210500 Sobic005G210500 Sobic006G271000--Sobic005G210500
Octagon: transcription factors


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