Gene annotation
Transcriptome id Sobic.003G044700.1,Sobic.003G044700.2,Sobic.003G044700.3
Synonym Sb03g003920
Functional annotation zinc finger family protein, putative, expressed
UniProt A0A1B6Q198
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF125
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G80400 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os01g08340.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a023195
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G135200 OB-fold nucleic acid binding domain containing protein, putative, expressed K15365: RecQ-mediated genome instability protein 2
2 Sobic.005G185200 - -
3 Sobic.003G074900 expressed protein -
4 Sobic.006G118400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@gibberellin 20 oxidase 2, putative, expressed -
5 Sobic.002G246800 acetyltransferase, GNAT family, putative, expressed K00621: GNPNAT1, glucosamine-phosphate N-acetyltransferase
6 Sobic.003G335300 E2F-related protein, putative, expressed -
7 Sobic.003G016300 SFT2, putative, expressed -
8 Sobic.001G192700 major facilitator superfamily domain-containing protein 5, putative, expressed -
9 Sobic.010G216400 expressed protein -
10 Sobic.001G219800 methyltransferase, putative, expressed -
11 Sobic.007G013900 rickettsia 17 kDa surface antigen family protein, expressed -
12 Sobic.007G141100 expressed protein K18179: cytochrome c oxidase assembly factor 6
13 Sobic.001G286100 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
14 Sobic.002G387800 - K12456: anaphase-promoting complex subunit 13
15 Sobic.003G294900 expressed protein -
16 Sobic.001G031800 ribosomal protein L30 containing protein, expressed K02907: RP-L30, MRPL30, large subunit ribosomal protein L30
17 Sobic.003G284100 expressed protein -
18 Sobic.002G352200 succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed K01899: succinyl-CoA synthetase alpha subunit
19 Sobic.009G209001 - -
20 Sobic.010G231700 expressed protein -


Gene co-expression network
sample Sobic003G044700 Sobic003G044700 Sobic001G135200 Sobic001G135200 Sobic003G044700--Sobic001G135200 Sobic005G185200 Sobic005G185200 Sobic003G044700--Sobic005G185200 Sobic003G074900 Sobic003G074900 Sobic003G044700--Sobic003G074900 Sobic006G118400 Sobic006G118400 Sobic003G044700--Sobic006G118400 Sobic002G246800 Sobic002G246800 Sobic003G044700--Sobic002G246800 Sobic003G335300 Sobic003G335300 Sobic003G044700--Sobic003G335300 Sobic003G016300 Sobic003G016300 Sobic003G044700--Sobic003G016300 Sobic001G192700 Sobic001G192700 Sobic003G044700--Sobic001G192700 Sobic010G216400 Sobic010G216400 Sobic003G044700--Sobic010G216400 Sobic001G135200--Sobic003G044700 Sobic001G135200--Sobic001G192700 Sobic001G135200--Sobic003G016300 Sobic004G261800 Sobic004G261800 Sobic001G135200--Sobic004G261800 Sobic002G352200 Sobic002G352200 Sobic001G135200--Sobic002G352200 Sobic004G100100 Sobic004G100100 Sobic001G135200--Sobic004G100100 Sobic009G244900 Sobic009G244900 Sobic001G135200--Sobic009G244900 Sobic001G135200--Sobic005G185200 Sobic006G271000 Sobic006G271000 Sobic001G135200--Sobic006G271000 Sobic005G185200--Sobic003G044700 Sobic005G185200--Sobic001G135200 Sobic001G188000 Sobic001G188000 Sobic005G185200--Sobic001G188000 Sobic001G203800 Sobic001G203800 Sobic005G185200--Sobic001G203800 Sobic001G528100 Sobic001G528100 Sobic005G185200--Sobic001G528100 Sobic002G037600 Sobic002G037600 Sobic005G185200--Sobic002G037600 Sobic003G284100 Sobic003G284100 Sobic005G185200--Sobic003G284100 Sobic004G328100 Sobic004G328100 Sobic005G185200--Sobic004G328100 Sobic005G185200--Sobic003G335300 Sobic008G136800 Sobic008G136800 Sobic003G074900--Sobic008G136800 Sobic006G124300 Sobic006G124300 Sobic003G074900--Sobic006G124300 Sobic006G203900 Sobic006G203900 Sobic003G074900--Sobic006G203900 Sobic002G387800 Sobic002G387800 Sobic003G074900--Sobic002G387800 Sobic009G211900 Sobic009G211900 Sobic003G074900--Sobic009G211900 Sobic003G074900--Sobic003G016300 Sobic001G219800 Sobic001G219800 Sobic003G074900--Sobic001G219800 Sobic007G141100 Sobic007G141100 Sobic003G074900--Sobic007G141100 Sobic009G001900 Sobic009G001900 Sobic003G074900--Sobic009G001900 Sobic003G273000 Sobic003G273000 Sobic006G118400--Sobic003G273000 Sobic004G232500 Sobic004G232500 Sobic006G118400--Sobic004G232500 Sobic006G118400--Sobic003G335300 Sobic001G482800 Sobic001G482800 Sobic006G118400--Sobic001G482800 Sobic004G159400 Sobic004G159400 Sobic006G118400--Sobic004G159400 Sobic001G365700 Sobic001G365700 Sobic006G118400--Sobic001G365700 Sobic006G118400--Sobic010G216400 Sobic010G031000 Sobic010G031000 Sobic006G118400--Sobic010G031000 Sobic010G262300 Sobic010G262300 Sobic006G118400--Sobic010G262300 Sobic001G031800 Sobic001G031800 Sobic002G246800--Sobic001G031800 Sobic002G246800--Sobic003G335300 Sobic001G181500 Sobic001G181500 Sobic002G246800--Sobic001G181500 Sobic009G209001 Sobic009G209001 Sobic002G246800--Sobic009G209001 Sobic010G231700 Sobic010G231700 Sobic002G246800--Sobic010G231700 Sobic002G246800--Sobic007G141100 Sobic002G246800--Sobic010G031000 Sobic009G215300 Sobic009G215300 Sobic002G246800--Sobic009G215300 Sobic002G246800--Sobic006G124300 Sobic003G335300--Sobic001G365700 Sobic003G335300--Sobic001G482800 Sobic004G173700 Sobic004G173700 Sobic003G335300--Sobic004G173700 Sobic003G335300--Sobic004G232500 Sobic003G335300--Sobic003G284100 Sobic003G137600 Sobic003G137600 Sobic003G335300--Sobic003G137600 Sobic003G335300--Sobic006G118400 Sobic004G247700 Sobic004G247700 Sobic003G335300--Sobic004G247700 Sobic003G335300--Sobic002G246800 Sobic003G016300--Sobic002G352200 Sobic002G217500 Sobic002G217500 Sobic003G016300--Sobic002G217500 Sobic003G016300--Sobic001G192700 Sobic003G016300--Sobic001G219800 Sobic008G018300 Sobic008G018300 Sobic003G016300--Sobic008G018300 Sobic003G016300--Sobic006G203900 Sobic002G255400 Sobic002G255400 Sobic003G016300--Sobic002G255400 Sobic003G016300--Sobic009G211900 Sobic002G420600 Sobic002G420600 Sobic003G016300--Sobic002G420600 Sobic001G192700--Sobic001G219800 Sobic001G192700--Sobic003G016300 Sobic001G352800 Sobic001G352800 Sobic001G192700--Sobic001G352800 Sobic002G232400 Sobic002G232400 Sobic001G192700--Sobic002G232400 Sobic001G192700--Sobic001G135200 Sobic001G348000 Sobic001G348000 Sobic001G192700--Sobic001G348000 Sobic004G117400 Sobic004G117400 Sobic001G192700--Sobic004G117400 Sobic001G091701 Sobic001G091701 Sobic001G192700--Sobic001G091701 Sobic001G192700--Sobic002G387800 Sobic010G216400--Sobic001G365700 Sobic009G069600 Sobic009G069600 Sobic010G216400--Sobic009G069600 Sobic010G216400--Sobic004G232500 Sobic010G216400--Sobic010G031000 Sobic010G216400--Sobic003G273000 Sobic009G176400 Sobic009G176400 Sobic010G216400--Sobic009G176400 Sobic010G216400--Sobic003G335300 Sobic010G216400--Sobic004G173700 Sobic010G216400--Sobic001G482800
Octagon: transcription factors


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