Gene annotation
Transcriptome id Sobic.006G118400.1
Synonym Sb06g019950
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
gibberellin 20 oxidase 2, putative, expressed
UniProt C5YAE8
Pfam PF14226 PF03171
Panther DB PTHR10209 PTHR10209:SF108
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G14130 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os04g39980.1 : gibberellin 20 oxidase 2, putative, expressed
MaizeGDB (Corn) Zm00025a005972 , Zm00025a011013
Brachypodium KQJ83140
Barley HORVU2Hr1G082370.2 , HORVU2Hr1G082370.3 , HORVU2Hr1G082370.4 , HORVU2Hr1G082370.5 , HORVU2Hr1G082370.6 , HORVU2Hr1G082370.7 , HORVU1Hr1G070710.1 , HORVU1Hr1G070710.2 , HORVU1Hr1G070710.3 , HORVU1Hr1G070710.4 , HORVU1Hr1G070710.5 , HORVU1Hr1G070710.6
Wheat TraesCS2D02G335000 , TraesCS6D02G190400 , TraesCS2A02G327900 , TraesCS2B02G359000 , TraesCS2B02G354100 , TraesCS2B02G354100
Populus -


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cDNA sequences
Sobic.006G118400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G273000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
2 Sobic.004G232500 dnaJ homolog subfamily C member 7, putative, expressed K09527: DnaJ homolog subfamily C member 7
3 Sobic.003G335300 E2F-related protein, putative, expressed -
4 Sobic.001G482800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
5 Sobic.004G159400 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
6 Sobic.001G365700 OsRhmbd13 - Putative Rhomboid homologue, expressed -
7 Sobic.010G216400 expressed protein -
8 Sobic.010G031000 expressed protein -
9 Sobic.010G262300 coiled-coil domain-containing protein 90A, mitochondrial precursor, putative, expressed -
10 Sobic.003G044700 zinc finger family protein, putative, expressed -
11 Sobic.001G031800 ribosomal protein L30 containing protein, expressed K02907: RP-L30, MRPL30, large subunit ribosomal protein L30
12 Sobic.007G141100 expressed protein K18179: cytochrome c oxidase assembly factor 6
13 Sobic.007G219500 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed -
14 Sobic.001G513300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein-methionine-S-oxide reductase, putative, expressed -
15 Sobic.009G069600 NADP-ME(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADP-malic enzyme(PubMedID : 26904072)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
16 Sobic.008G188400 GNS1/SUR4 membrane family protein, putative, expressed -
17 Sobic.004G159000 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
18 Sobic.002G246800 acetyltransferase, GNAT family, putative, expressed K00621: GNPNAT1, glucosamine-phosphate N-acetyltransferase
19 Sobic.003G137600 CHIT10 - Chitinase family protein precursor, expressed -
20 Sobic.001G134200 expressed protein -


Gene co-expression network
sample Sobic006G118400 Sobic006G118400 Sobic003G273000 Sobic003G273000 Sobic006G118400--Sobic003G273000 Sobic004G232500 Sobic004G232500 Sobic006G118400--Sobic004G232500 Sobic003G335300 Sobic003G335300 Sobic006G118400--Sobic003G335300 Sobic001G482800 Sobic001G482800 Sobic006G118400--Sobic001G482800 Sobic004G159400 Sobic004G159400 Sobic006G118400--Sobic004G159400 Sobic001G365700 Sobic001G365700 Sobic006G118400--Sobic001G365700 Sobic010G216400 Sobic010G216400 Sobic006G118400--Sobic010G216400 Sobic010G031000 Sobic010G031000 Sobic006G118400--Sobic010G031000 Sobic010G262300 Sobic010G262300 Sobic006G118400--Sobic010G262300 Sobic001G513300 Sobic001G513300 Sobic003G273000--Sobic001G513300 Sobic003G273000--Sobic004G232500 Sobic009G069600 Sobic009G069600 Sobic003G273000--Sobic009G069600 Sobic003G273000--Sobic010G031000 Sobic003G273000--Sobic004G159400 Sobic003G273000--Sobic006G118400 Sobic001G508466 Sobic001G508466 Sobic003G273000--Sobic001G508466 Sobic001G295100 Sobic001G295100 Sobic003G273000--Sobic001G295100 Sobic003G273000--Sobic010G216400 Sobic004G232500--Sobic003G335300 Sobic004G232500--Sobic003G273000 Sobic004G232500--Sobic001G482800 Sobic007G212100 Sobic007G212100 Sobic004G232500--Sobic007G212100 Sobic008G188400 Sobic008G188400 Sobic004G232500--Sobic008G188400 Sobic004G232500--Sobic010G216400 Sobic004G232500--Sobic001G365700 Sobic004G232500--Sobic006G118400 Sobic004G232500--Sobic004G159400 Sobic003G335300--Sobic001G365700 Sobic003G335300--Sobic001G482800 Sobic004G173700 Sobic004G173700 Sobic003G335300--Sobic004G173700 Sobic003G335300--Sobic004G232500 Sobic003G284100 Sobic003G284100 Sobic003G335300--Sobic003G284100 Sobic003G137600 Sobic003G137600 Sobic003G335300--Sobic003G137600 Sobic003G335300--Sobic006G118400 Sobic004G247700 Sobic004G247700 Sobic003G335300--Sobic004G247700 Sobic002G246800 Sobic002G246800 Sobic003G335300--Sobic002G246800 Sobic001G482800--Sobic004G247700 Sobic001G482800--Sobic003G335300 Sobic001G482800--Sobic001G365700 Sobic001G482800--Sobic004G232500 Sobic001G482800--Sobic008G188400 Sobic001G482800--Sobic003G137600 Sobic001G482800--Sobic006G118400 Sobic004G247500 Sobic004G247500 Sobic001G482800--Sobic004G247500 Sobic001G482800--Sobic003G284100 Sobic001G197000 Sobic001G197000 Sobic004G159400--Sobic001G197000 Sobic004G159400--Sobic001G508466 Sobic008G006300 Sobic008G006300 Sobic004G159400--Sobic008G006300 Sobic001G047800 Sobic001G047800 Sobic004G159400--Sobic001G047800 Sobic004G159400--Sobic003G273000 Sobic002G418400 Sobic002G418400 Sobic004G159400--Sobic002G418400 Sobic002G329900 Sobic002G329900 Sobic004G159400--Sobic002G329900 Sobic004G259432 Sobic004G259432 Sobic004G159400--Sobic004G259432 Sobic004G159400--Sobic004G232500 Sobic001G365700--Sobic003G335300 Sobic001G365700--Sobic004G173700 Sobic004G127000 Sobic004G127000 Sobic001G365700--Sobic004G127000 Sobic001G365700--Sobic003G137600 Sobic001G365700--Sobic001G482800 Sobic001G365700--Sobic010G216400 Sobic001G365700--Sobic003G284100 Sobic001G365700--Sobic004G232500 Sobic010G043250 Sobic010G043250 Sobic001G365700--Sobic010G043250 Sobic010G216400--Sobic001G365700 Sobic010G216400--Sobic009G069600 Sobic010G216400--Sobic004G232500 Sobic010G216400--Sobic010G031000 Sobic010G216400--Sobic003G273000 Sobic009G176400 Sobic009G176400 Sobic010G216400--Sobic009G176400 Sobic010G216400--Sobic003G335300 Sobic010G216400--Sobic004G173700 Sobic010G216400--Sobic001G482800 Sobic010G031000--Sobic009G069600 Sobic010G031000--Sobic003G273000 Sobic004G260200 Sobic004G260200 Sobic010G031000--Sobic004G260200 Sobic010G031000--Sobic001G197000 Sobic001G404800 Sobic001G404800 Sobic010G031000--Sobic001G404800 Sobic010G031000--Sobic001G047800 Sobic010G031000--Sobic001G508466 Sobic003G215700 Sobic003G215700 Sobic010G031000--Sobic003G215700 Sobic010G031000--Sobic010G216400 Sobic006G239300 Sobic006G239300 Sobic010G262300--Sobic006G239300 Sobic001G308700 Sobic001G308700 Sobic010G262300--Sobic001G308700 Sobic002G362000 Sobic002G362000 Sobic010G262300--Sobic002G362000 Sobic004G030501 Sobic004G030501 Sobic010G262300--Sobic004G030501 Sobic001G148700 Sobic001G148700 Sobic010G262300--Sobic001G148700 Sobic004G123000 Sobic004G123000 Sobic010G262300--Sobic004G123000 Sobic010G262300--Sobic006G118400 Sobic001G067601 Sobic001G067601 Sobic010G262300--Sobic001G067601 Sobic010G262300--Sobic001G513300
Octagon: transcription factors


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