Gene annotation
Transcriptome id Sobic.009G069600.1
Synonym ATNADP-ME3, NADP-ME3, Sb09g005810,NADP-ME;NADP-ME2/3/4
Functional annotation NADP-ME (PubMedID : 19549309)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
NADP-malic enzyme (PubMedID : 26904072)
NADP-dependent malic enzyme (PubMedID : 27016024)
NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
UniProt C5YU98
Pfam PF00390 PF03949
Panther DB PTHR23406 PTHR23406:SF11
NCBI CDD -
KEGG Orthology K00029; E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
Gene Ontology GO:0004471; malate dehydrogenase (decarboxylating) (NAD+) activity


Orthologs (automatic annotation)
TAIR AT5G25880 : NADP-malic enzyme 3
RAP-DB (Rice) LOC_Os05g09440.1 : NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a043089 , Zm00025a037519
Brachypodium KQK07158 , KQK09685 , PNT72829 , PNT72831
Barley HORVU1Hr1G028030.30 , HORVU1Hr1G028030.31 , HORVU1Hr1G028030.8 , HORVU1Hr1G028030.3 , HORVU1Hr1G028030.4 , HORVU1Hr1G028030.5 , HORVU1Hr1G028030.6 , HORVU1Hr1G028030.7 , HORVU1Hr1G028030.13 , HORVU1Hr1G028030.16 , HORVU1Hr1G028030.17 , HORVU1Hr1G028030.14 , HORVU1Hr1G028030.15 , HORVU1Hr1G028030.18 , HORVU1Hr1G028030.19 , HORVU3Hr1G070850.6 , HORVU3Hr1G070850.5 , HORVU3Hr1G070850.4 , HORVU1Hr1G028030.29 , HORVU1Hr1G028030.28 , HORVU3Hr1G070850.1 , HORVU3Hr1G070850.3 , HORVU3Hr1G070850.2 , HORVU1Hr1G028030.23 , HORVU1Hr1G028030.22 , HORVU1Hr1G028030.21 , HORVU1Hr1G028030.20 , HORVU1Hr1G028030.27 , HORVU1Hr1G028030.26 , HORVU1Hr1G028030.25 , HORVU1Hr1G028030.24
Wheat TraesCS3B02G309300 , TraesCS1A02G122500 , TraesCS3A02G275600 , TraesCS3A02G275600 , TraesCS1D02G123400 , TraesCS1B02G141700 , TraesCS3D02G275500 , TraesCS1B02G141700 , TraesCS1D02G123400
Populus -


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cDNA sequences
Sobic.009G069600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G031000 expressed protein -
2 Sobic.010G216400 expressed protein -
3 Sobic.003G273000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
4 Sobic.001G508466 - -
5 Sobic.004G232500 dnaJ homolog subfamily C member 7, putative, expressed K09527: DnaJ homolog subfamily C member 7
6 Sobic.004G159400 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
7 Sobic.001G197000 dehydration response related protein, putative, expressed -
8 Sobic.001G365700 OsRhmbd13 - Putative Rhomboid homologue, expressed -
9 Sobic.003G335300 E2F-related protein, putative, expressed -
10 Sobic.006G039600 expressed protein -
11 Sobic.006G118400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@gibberellin 20 oxidase 2, putative, expressed -
12 Sobic.008G006300 prenylated rab acceptor, putative, expressed -
13 Sobic.001G513300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein-methionine-S-oxide reductase, putative, expressed -
14 Sobic.002G329900 core histone H2A/H2B/H3/H4, putative, expressed K11251: histone H2A
15 Sobic.001G404800 CHCH domain containing protein, expressed K03952: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8
16 Sobic.001G077000 similar to Cold acclimation protein COR413-PM1(PubMedID : 29862293)@cold acclimation protein WCOR413, putative, expressed -
17 Sobic.009G063900 expressed protein -
18 Sobic.010G001900 Long chain acyl-CoA oxidase(PubMedID : 18985313)@acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
19 Sobic.009G176500 similar to Putative uncharacterized protein(PubMedID : 29862293)@harpin-induced protein 1 domain containing protein, expressed -
20 Sobic.009G215300 fiber protein Fb11, putative, expressed -


Gene co-expression network
sample Sobic009G069600 Sobic009G069600 Sobic010G031000 Sobic010G031000 Sobic009G069600--Sobic010G031000 Sobic010G216400 Sobic010G216400 Sobic009G069600--Sobic010G216400 Sobic003G273000 Sobic003G273000 Sobic009G069600--Sobic003G273000 Sobic001G508466 Sobic001G508466 Sobic009G069600--Sobic001G508466 Sobic004G232500 Sobic004G232500 Sobic009G069600--Sobic004G232500 Sobic004G159400 Sobic004G159400 Sobic009G069600--Sobic004G159400 Sobic001G197000 Sobic001G197000 Sobic009G069600--Sobic001G197000 Sobic001G365700 Sobic001G365700 Sobic009G069600--Sobic001G365700 Sobic003G335300 Sobic003G335300 Sobic009G069600--Sobic003G335300 Sobic010G031000--Sobic009G069600 Sobic010G031000--Sobic003G273000 Sobic004G260200 Sobic004G260200 Sobic010G031000--Sobic004G260200 Sobic010G031000--Sobic001G197000 Sobic001G404800 Sobic001G404800 Sobic010G031000--Sobic001G404800 Sobic001G047800 Sobic001G047800 Sobic010G031000--Sobic001G047800 Sobic010G031000--Sobic001G508466 Sobic003G215700 Sobic003G215700 Sobic010G031000--Sobic003G215700 Sobic010G031000--Sobic010G216400 Sobic010G216400--Sobic001G365700 Sobic010G216400--Sobic009G069600 Sobic010G216400--Sobic004G232500 Sobic010G216400--Sobic010G031000 Sobic010G216400--Sobic003G273000 Sobic009G176400 Sobic009G176400 Sobic010G216400--Sobic009G176400 Sobic010G216400--Sobic003G335300 Sobic004G173700 Sobic004G173700 Sobic010G216400--Sobic004G173700 Sobic001G482800 Sobic001G482800 Sobic010G216400--Sobic001G482800 Sobic001G513300 Sobic001G513300 Sobic003G273000--Sobic001G513300 Sobic003G273000--Sobic004G232500 Sobic003G273000--Sobic009G069600 Sobic003G273000--Sobic010G031000 Sobic003G273000--Sobic004G159400 Sobic006G118400 Sobic006G118400 Sobic003G273000--Sobic006G118400 Sobic003G273000--Sobic001G508466 Sobic001G295100 Sobic001G295100 Sobic003G273000--Sobic001G295100 Sobic003G273000--Sobic010G216400 Sobic004G146000 Sobic004G146000 Sobic001G508466--Sobic004G146000 Sobic001G508466--Sobic004G159400 Sobic004G205100 Sobic004G205100 Sobic001G508466--Sobic004G205100 Sobic002G418400 Sobic002G418400 Sobic001G508466--Sobic002G418400 Sobic005G099000 Sobic005G099000 Sobic001G508466--Sobic005G099000 Sobic001G108200 Sobic001G108200 Sobic001G508466--Sobic001G108200 Sobic002G355100 Sobic002G355100 Sobic001G508466--Sobic002G355100 Sobic009G234100 Sobic009G234100 Sobic001G508466--Sobic009G234100 Sobic004G208700 Sobic004G208700 Sobic001G508466--Sobic004G208700 Sobic004G232500--Sobic003G335300 Sobic004G232500--Sobic003G273000 Sobic004G232500--Sobic001G482800 Sobic007G212100 Sobic007G212100 Sobic004G232500--Sobic007G212100 Sobic008G188400 Sobic008G188400 Sobic004G232500--Sobic008G188400 Sobic004G232500--Sobic010G216400 Sobic004G232500--Sobic001G365700 Sobic004G232500--Sobic006G118400 Sobic004G232500--Sobic004G159400 Sobic004G159400--Sobic001G197000 Sobic004G159400--Sobic001G508466 Sobic008G006300 Sobic008G006300 Sobic004G159400--Sobic008G006300 Sobic004G159400--Sobic001G047800 Sobic004G159400--Sobic003G273000 Sobic004G159400--Sobic002G418400 Sobic002G329900 Sobic002G329900 Sobic004G159400--Sobic002G329900 Sobic004G259432 Sobic004G259432 Sobic004G159400--Sobic004G259432 Sobic004G159400--Sobic004G232500 Sobic001G197000--Sobic004G159400 Sobic001G077000 Sobic001G077000 Sobic001G197000--Sobic001G077000 Sobic001G197000--Sobic002G329900 Sobic001G197000--Sobic003G215700 Sobic001G197000--Sobic001G047800 Sobic001G533400 Sobic001G533400 Sobic001G197000--Sobic001G533400 Sobic003G209000 Sobic003G209000 Sobic001G197000--Sobic003G209000 Sobic001G197000--Sobic002G418400 Sobic001G197000--Sobic010G031000 Sobic001G365700--Sobic003G335300 Sobic001G365700--Sobic004G173700 Sobic004G127000 Sobic004G127000 Sobic001G365700--Sobic004G127000 Sobic003G137600 Sobic003G137600 Sobic001G365700--Sobic003G137600 Sobic001G365700--Sobic001G482800 Sobic001G365700--Sobic010G216400 Sobic003G284100 Sobic003G284100 Sobic001G365700--Sobic003G284100 Sobic001G365700--Sobic004G232500 Sobic010G043250 Sobic010G043250 Sobic001G365700--Sobic010G043250 Sobic003G335300--Sobic001G365700 Sobic003G335300--Sobic001G482800 Sobic003G335300--Sobic004G173700 Sobic003G335300--Sobic004G232500 Sobic003G335300--Sobic003G284100 Sobic003G335300--Sobic003G137600 Sobic003G335300--Sobic006G118400 Sobic004G247700 Sobic004G247700 Sobic003G335300--Sobic004G247700 Sobic002G246800 Sobic002G246800 Sobic003G335300--Sobic002G246800
Octagon: transcription factors


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