Gene annotation
Transcriptome id Sobic.001G365700.1
Synonym Sb01g034860
Functional annotation OsRhmbd13 - Putative Rhomboid homologue, expressed
UniProt C5WZM4
Pfam PF08551
Panther DB PTHR13377 PTHR13377:SF4
NCBI CDD KOG2890; Predicted membrane protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0006890retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum


Orthologs (automatic annotation)
TAIR AT3G07950 : rhomboid protein-related
RAP-DB (Rice) LOC_Os03g24390.1 : OsRhmbd8 - Putative Rhomboid homologue, expressed
MaizeGDB (Corn) Zm00025a002555 , Zm00025a052326
Brachypodium PNT77383 , PNT77382
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G365700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G335300 E2F-related protein, putative, expressed -
2 Sobic.004G173700 SLL1 protein, putative, expressed -
3 Sobic.004G127000 - -
4 Sobic.003G137600 CHIT10 - Chitinase family protein precursor, expressed -
5 Sobic.001G482800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
6 Sobic.010G216400 expressed protein -
7 Sobic.003G284100 expressed protein -
8 Sobic.004G232500 dnaJ homolog subfamily C member 7, putative, expressed K09527: DnaJ homolog subfamily C member 7
9 Sobic.010G043250 - -
10 Sobic.002G228900 RNA recognition motif containing protein, putative, expressed -
11 Sobic.004G247700 expressed protein -
12 Sobic.002G113200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.007G212100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@AGC_PVPK_like_CDK8.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
14 Sobic.009G176400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
15 Sobic.004G247500 "HD-zip transcription factor, ortholog of sihdz02 of foxtail millet (Setaria italica L.)"(PubMedID : 29862293)@caleosin related protein, putative, expressed K17991: peroxygenase
16 Sobic.007G138100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
17 Sobic.008G188400 GNS1/SUR4 membrane family protein, putative, expressed -
18 Sobic.002G420600 nucleoside-triphosphatase, putative, expressed -
19 Sobic.003G212000 OsCML12 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
20 Sobic.003G139200 - -


Gene co-expression network
sample Sobic001G365700 Sobic001G365700 Sobic003G335300 Sobic003G335300 Sobic001G365700--Sobic003G335300 Sobic004G173700 Sobic004G173700 Sobic001G365700--Sobic004G173700 Sobic004G127000 Sobic004G127000 Sobic001G365700--Sobic004G127000 Sobic003G137600 Sobic003G137600 Sobic001G365700--Sobic003G137600 Sobic001G482800 Sobic001G482800 Sobic001G365700--Sobic001G482800 Sobic010G216400 Sobic010G216400 Sobic001G365700--Sobic010G216400 Sobic003G284100 Sobic003G284100 Sobic001G365700--Sobic003G284100 Sobic004G232500 Sobic004G232500 Sobic001G365700--Sobic004G232500 Sobic010G043250 Sobic010G043250 Sobic001G365700--Sobic010G043250 Sobic003G335300--Sobic001G365700 Sobic003G335300--Sobic001G482800 Sobic003G335300--Sobic004G173700 Sobic003G335300--Sobic004G232500 Sobic003G335300--Sobic003G284100 Sobic003G335300--Sobic003G137600 Sobic006G118400 Sobic006G118400 Sobic003G335300--Sobic006G118400 Sobic004G247700 Sobic004G247700 Sobic003G335300--Sobic004G247700 Sobic002G246800 Sobic002G246800 Sobic003G335300--Sobic002G246800 Sobic004G173700--Sobic003G137600 Sobic006G120900 Sobic006G120900 Sobic004G173700--Sobic006G120900 Sobic002G420600 Sobic002G420600 Sobic004G173700--Sobic002G420600 Sobic001G387200 Sobic001G387200 Sobic004G173700--Sobic001G387200 Sobic004G173700--Sobic001G365700 Sobic003G129900 Sobic003G129900 Sobic004G173700--Sobic003G129900 Sobic007G212100 Sobic007G212100 Sobic004G173700--Sobic007G212100 Sobic001G303900 Sobic001G303900 Sobic004G173700--Sobic001G303900 Sobic008G018300 Sobic008G018300 Sobic004G173700--Sobic008G018300 Sobic004G127000--Sobic001G365700 Sobic002G113200 Sobic002G113200 Sobic004G127000--Sobic002G113200 Sobic004G127000--Sobic010G043250 Sobic004G127000--Sobic003G137600 Sobic004G127000--Sobic004G173700 Sobic004G127000--Sobic003G284100 Sobic003G212000 Sobic003G212000 Sobic004G127000--Sobic003G212000 Sobic004G127000--Sobic004G247700 Sobic003G139200 Sobic003G139200 Sobic004G127000--Sobic003G139200 Sobic003G137600--Sobic004G173700 Sobic003G137600--Sobic003G212000 Sobic003G234500 Sobic003G234500 Sobic003G137600--Sobic003G234500 Sobic003G137600--Sobic006G120900 Sobic003G137600--Sobic002G113200 Sobic003G137600--Sobic001G365700 Sobic003G137600--Sobic007G212100 Sobic003G137600--Sobic003G284100 Sobic009G189700 Sobic009G189700 Sobic003G137600--Sobic009G189700 Sobic001G482800--Sobic004G247700 Sobic001G482800--Sobic003G335300 Sobic001G482800--Sobic001G365700 Sobic001G482800--Sobic004G232500 Sobic008G188400 Sobic008G188400 Sobic001G482800--Sobic008G188400 Sobic001G482800--Sobic003G137600 Sobic001G482800--Sobic006G118400 Sobic004G247500 Sobic004G247500 Sobic001G482800--Sobic004G247500 Sobic001G482800--Sobic003G284100 Sobic010G216400--Sobic001G365700 Sobic009G069600 Sobic009G069600 Sobic010G216400--Sobic009G069600 Sobic010G216400--Sobic004G232500 Sobic010G031000 Sobic010G031000 Sobic010G216400--Sobic010G031000 Sobic003G273000 Sobic003G273000 Sobic010G216400--Sobic003G273000 Sobic009G176400 Sobic009G176400 Sobic010G216400--Sobic009G176400 Sobic010G216400--Sobic003G335300 Sobic010G216400--Sobic004G173700 Sobic010G216400--Sobic001G482800 Sobic003G284100--Sobic003G212000 Sobic003G284100--Sobic002G113200 Sobic003G013700 Sobic003G013700 Sobic003G284100--Sobic003G013700 Sobic003G089100 Sobic003G089100 Sobic003G284100--Sobic003G089100 Sobic006G070564 Sobic006G070564 Sobic003G284100--Sobic006G070564 Sobic004G279200 Sobic004G279200 Sobic003G284100--Sobic004G279200 Sobic003G284100--Sobic004G247500 Sobic009G157800 Sobic009G157800 Sobic003G284100--Sobic009G157800 Sobic003G284100--Sobic003G137600 Sobic004G232500--Sobic003G335300 Sobic004G232500--Sobic003G273000 Sobic004G232500--Sobic001G482800 Sobic004G232500--Sobic007G212100 Sobic004G232500--Sobic008G188400 Sobic004G232500--Sobic010G216400 Sobic004G232500--Sobic001G365700 Sobic004G232500--Sobic006G118400 Sobic004G159400 Sobic004G159400 Sobic004G232500--Sobic004G159400 Sobic010G043250--Sobic002G113200 Sobic003G133100 Sobic003G133100 Sobic010G043250--Sobic003G133100 Sobic010G043250--Sobic003G212000 Sobic005G039900 Sobic005G039900 Sobic010G043250--Sobic005G039900 Sobic010G043250--Sobic003G234500 Sobic007G138100 Sobic007G138100 Sobic010G043250--Sobic007G138100 Sobic010G043250--Sobic003G137600 Sobic008G071300 Sobic008G071300 Sobic010G043250--Sobic008G071300 Sobic010G043250--Sobic004G127000
Octagon: transcription factors


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