Gene annotation
Transcriptome id Sobic.002G228900.1,Sobic.002G228900.2
Synonym RBP47C, ATRBP47C, Sb02g026820
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1B6QD11 , A0A1B6QCZ3
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF352
NCBI CDD KOG0148; Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G47490 : RNA-binding protein 47C
RAP-DB (Rice) LOC_Os09g28810.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a014092 , Zm00025a047298
Brachypodium KQJ82883 , KQJ99982 , KQJ90544
Barley HORVU5Hr1G069180.9 , HORVU5Hr1G069180.8 , HORVU5Hr1G069180.7 , HORVU5Hr1G069180.5 , HORVU6Hr1G048390.1 , HORVU6Hr1G048390.2 , HORVU6Hr1G048390.3 , HORVU5Hr1G069180.11 , HORVU5Hr1G069180.10 , HORVU5Hr1G069180.3 , HORVU5Hr1G069180.2 , HORVU5Hr1G069180.1 , HORVU5Hr1G069180.6
Wheat TraesCS5B02G241400 , TraesCS2B02G335700 , TraesCS2B02G335700 , TraesCS2B02G335700 , TraesCS2A02G317700 , TraesCS2A02G317700 , TraesCS2A02G317700 , TraesCS2D02G315400 , TraesCS2D02G315400 , TraesCS2D02G315400 , TraesCS2D02G315400 , TraesCS5D02G250100 , TraesCS5A02G243500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G173700 SLL1 protein, putative, expressed -
2 Sobic.002G113200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.003G212000 OsCML12 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
4 Sobic.003G284100 expressed protein -
5 Sobic.003G234500 CA(PubMedID : 19549309)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
6 Sobic.003G137600 CHIT10 - Chitinase family protein precursor, expressed -
7 Sobic.003G089100 WD domain, G-beta repeat domain containing protein, expressed -
8 Sobic.009G157800 transporter family protein, putative, expressed -
9 Sobic.002G255400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K09569: FK506-binding protein 2
10 Sobic.003G013700 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
11 Sobic.001G365700 OsRhmbd13 - Putative Rhomboid homologue, expressed -
12 Sobic.002G420600 nucleoside-triphosphatase, putative, expressed -
13 Sobic.003G274200 5-nucleotidase surE, putative, expressed K03787: 5'-nucleotidase
14 Sobic.007G014700 Fructokinase-2 (Zm)(PubMedID : 27208977)@kinase, pfkB family, putative, expressed K00847: E2.7.1.4, fructokinase
15 Sobic.001G387200 expressed protein -
16 Sobic.003G202400 expressed protein -
17 Sobic.002G259700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transketolase, putative, expressed K00162: PDHB, pyruvate dehydrogenase E1 component beta subunit
18 Sobic.006G120900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
19 Sobic.003G380300 cytochrome c, putative, expressed K08738: cytochrome c
20 Sobic.008G018300 expressed protein K17402: small subunit ribosomal protein S23


Gene co-expression network
sample Sobic002G228900 Sobic002G228900 Sobic004G173700 Sobic004G173700 Sobic002G228900--Sobic004G173700 Sobic002G113200 Sobic002G113200 Sobic002G228900--Sobic002G113200 Sobic003G212000 Sobic003G212000 Sobic002G228900--Sobic003G212000 Sobic003G284100 Sobic003G284100 Sobic002G228900--Sobic003G284100 Sobic003G234500 Sobic003G234500 Sobic002G228900--Sobic003G234500 Sobic003G137600 Sobic003G137600 Sobic002G228900--Sobic003G137600 Sobic003G089100 Sobic003G089100 Sobic002G228900--Sobic003G089100 Sobic009G157800 Sobic009G157800 Sobic002G228900--Sobic009G157800 Sobic002G255400 Sobic002G255400 Sobic002G228900--Sobic002G255400 Sobic004G173700--Sobic003G137600 Sobic006G120900 Sobic006G120900 Sobic004G173700--Sobic006G120900 Sobic002G420600 Sobic002G420600 Sobic004G173700--Sobic002G420600 Sobic001G387200 Sobic001G387200 Sobic004G173700--Sobic001G387200 Sobic001G365700 Sobic001G365700 Sobic004G173700--Sobic001G365700 Sobic003G129900 Sobic003G129900 Sobic004G173700--Sobic003G129900 Sobic007G212100 Sobic007G212100 Sobic004G173700--Sobic007G212100 Sobic001G303900 Sobic001G303900 Sobic004G173700--Sobic001G303900 Sobic008G018300 Sobic008G018300 Sobic004G173700--Sobic008G018300 Sobic002G113200--Sobic003G212000 Sobic008G071300 Sobic008G071300 Sobic002G113200--Sobic008G071300 Sobic002G113200--Sobic003G234500 Sobic002G113200--Sobic009G157800 Sobic004G279200 Sobic004G279200 Sobic002G113200--Sobic004G279200 Sobic001G503600 Sobic001G503600 Sobic002G113200--Sobic001G503600 Sobic006G267100 Sobic006G267100 Sobic002G113200--Sobic006G267100 Sobic002G113200--Sobic003G284100 Sobic010G043250 Sobic010G043250 Sobic002G113200--Sobic010G043250 Sobic003G212000--Sobic003G234500 Sobic003G212000--Sobic008G071300 Sobic003G212000--Sobic002G113200 Sobic003G212000--Sobic006G267100 Sobic009G189700 Sobic009G189700 Sobic003G212000--Sobic009G189700 Sobic005G144000 Sobic005G144000 Sobic003G212000--Sobic005G144000 Sobic003G212000--Sobic001G503600 Sobic002G389600 Sobic002G389600 Sobic003G212000--Sobic002G389600 Sobic002G170100 Sobic002G170100 Sobic003G212000--Sobic002G170100 Sobic003G284100--Sobic003G212000 Sobic003G284100--Sobic002G113200 Sobic003G013700 Sobic003G013700 Sobic003G284100--Sobic003G013700 Sobic003G284100--Sobic003G089100 Sobic006G070564 Sobic006G070564 Sobic003G284100--Sobic006G070564 Sobic003G284100--Sobic004G279200 Sobic004G247500 Sobic004G247500 Sobic003G284100--Sobic004G247500 Sobic003G284100--Sobic009G157800 Sobic003G284100--Sobic003G137600 Sobic003G234500--Sobic003G212000 Sobic003G234500--Sobic008G071300 Sobic003G234500--Sobic006G267100 Sobic003G234500--Sobic005G144000 Sobic003G234500--Sobic002G170100 Sobic003G234500--Sobic009G189700 Sobic004G180100 Sobic004G180100 Sobic003G234500--Sobic004G180100 Sobic008G122800 Sobic008G122800 Sobic003G234500--Sobic008G122800 Sobic003G110932 Sobic003G110932 Sobic003G234500--Sobic003G110932 Sobic003G137600--Sobic004G173700 Sobic003G137600--Sobic003G212000 Sobic003G137600--Sobic003G234500 Sobic003G137600--Sobic006G120900 Sobic003G137600--Sobic002G113200 Sobic003G137600--Sobic001G365700 Sobic003G137600--Sobic007G212100 Sobic003G137600--Sobic003G284100 Sobic003G137600--Sobic009G189700 Sobic003G201500 Sobic003G201500 Sobic003G089100--Sobic003G201500 Sobic003G089100--Sobic003G013700 Sobic003G260600 Sobic003G260600 Sobic003G089100--Sobic003G260600 Sobic003G089100--Sobic002G255400 Sobic004G113600 Sobic004G113600 Sobic003G089100--Sobic004G113600 Sobic001G400000 Sobic001G400000 Sobic003G089100--Sobic001G400000 Sobic003G089100--Sobic002G420600 Sobic005G050400 Sobic005G050400 Sobic003G089100--Sobic005G050400 Sobic001G356200 Sobic001G356200 Sobic003G089100--Sobic001G356200 Sobic009G157800--Sobic005G144000 Sobic009G157800--Sobic008G071300 Sobic004G154100 Sobic004G154100 Sobic009G157800--Sobic004G154100 Sobic009G157800--Sobic008G122800 Sobic001G039100 Sobic001G039100 Sobic009G157800--Sobic001G039100 Sobic009G157800--Sobic004G180100 Sobic009G157800--Sobic001G503600 Sobic009G157800--Sobic003G212000 Sobic009G157800--Sobic002G170100 Sobic002G255400--Sobic003G260600 Sobic002G255400--Sobic003G089100 Sobic007G014700 Sobic007G014700 Sobic002G255400--Sobic007G014700 Sobic002G255400--Sobic008G018300 Sobic002G255400--Sobic002G420600 Sobic002G255400--Sobic003G201500 Sobic002G255400--Sobic003G013700 Sobic002G352200 Sobic002G352200 Sobic002G255400--Sobic002G352200 Sobic002G255400--Sobic001G387200
Octagon: transcription factors


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