Gene annotation
Transcriptome id Sobic.003G380300.1
Synonym Sb03g042000, CYTC-2
Functional annotation cytochrome c, putative, expressed
UniProt C5XEM6
Pfam PF00034
Panther DB PTHR11961:SF8 PTHR11961
NCBI CDD KOG3453; Cytochrome c
KEGG Orthology K08738; cytochrome c
Gene Ontology GO:0009055; electron transfer activity


Orthologs (automatic annotation)
TAIR AT4G10040 : cytochrome c-2
RAP-DB (Rice) LOC_Os05g34770.1 : cytochrome c, putative, expressed
MaizeGDB (Corn) Zm00025a026531 , Zm00025a043732 , Zm00025a037388
Brachypodium KQK06187 , KQK10937
Barley HORVU3Hr1G090840.1 , HORVU1Hr1G063940.1
Wheat TraesCS2D02G566900 , TraesCS1B02G273900 , TraesCS2B02G616800 , TraesCS3A02G405000 , TraesCS3B02G438700 , TraesCS1A02G263300 , TraesCS1D02G263400 , TraesCS3D02G400400
Populus -


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cDNA sequences
Sobic.003G380300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G120900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
2 Sobic.001G408400 phosphatase, putative, expressed K07252: dolichyldiphosphatase
3 Sobic.001G387200 expressed protein -
4 Sobic.010G105000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
5 Sobic.004G173700 SLL1 protein, putative, expressed -
6 Sobic.003G234500 CA(PubMedID : 19549309)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
7 Sobic.003G137600 CHIT10 - Chitinase family protein precursor, expressed -
8 Sobic.003G129900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
9 Sobic.002G259700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transketolase, putative, expressed K00162: PDHB, pyruvate dehydrogenase E1 component beta subunit
10 Sobic.003G212000 OsCML12 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
11 Sobic.005G145201 - K06630: 14-3-3 protein epsilon
12 Sobic.007G138100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
13 Sobic.006G230400 diacylglycerol kinase, putative, expressed K00901: dgkA, diacylglycerol kinase (ATP)
14 Sobic.004G176200 SacI homology domain containing protein, expressed -
15 Sobic.003G308800 transmembrane protein 56, putative, expressed -
16 Sobic.002G228900 RNA recognition motif containing protein, putative, expressed -
17 Sobic.008G141600 expressed protein -
18 Sobic.001G020700 expressed protein -
19 Sobic.002G420600 nucleoside-triphosphatase, putative, expressed -
20 Sobic.005G019100 TRAF-type zinc finger family protein, expressed -


Gene co-expression network
sample Sobic003G380300 Sobic003G380300 Sobic006G120900 Sobic006G120900 Sobic003G380300--Sobic006G120900 Sobic001G408400 Sobic001G408400 Sobic003G380300--Sobic001G408400 Sobic001G387200 Sobic001G387200 Sobic003G380300--Sobic001G387200 Sobic010G105000 Sobic010G105000 Sobic003G380300--Sobic010G105000 Sobic004G173700 Sobic004G173700 Sobic003G380300--Sobic004G173700 Sobic003G234500 Sobic003G234500 Sobic003G380300--Sobic003G234500 Sobic003G137600 Sobic003G137600 Sobic003G380300--Sobic003G137600 Sobic003G129900 Sobic003G129900 Sobic003G380300--Sobic003G129900 Sobic002G259700 Sobic002G259700 Sobic003G380300--Sobic002G259700 Sobic006G120900--Sobic004G173700 Sobic006G120900--Sobic003G234500 Sobic003G089100 Sobic003G089100 Sobic006G120900--Sobic003G089100 Sobic006G120900--Sobic003G129900 Sobic006G120900--Sobic003G380300 Sobic003G212000 Sobic003G212000 Sobic006G120900--Sobic003G212000 Sobic006G120900--Sobic001G387200 Sobic002G420600 Sobic002G420600 Sobic006G120900--Sobic002G420600 Sobic006G120900--Sobic003G137600 Sobic001G408400--Sobic006G120900 Sobic001G408400--Sobic002G420600 Sobic001G408400--Sobic003G380300 Sobic010G253400 Sobic010G253400 Sobic001G408400--Sobic010G253400 Sobic001G408400--Sobic003G137600 Sobic008G141600 Sobic008G141600 Sobic001G408400--Sobic008G141600 Sobic001G408400--Sobic003G234500 Sobic005G145201 Sobic005G145201 Sobic001G408400--Sobic005G145201 Sobic001G408400--Sobic004G173700 Sobic001G387200--Sobic003G129900 Sobic004G093600 Sobic004G093600 Sobic001G387200--Sobic004G093600 Sobic001G387200--Sobic006G120900 Sobic001G387200--Sobic004G173700 Sobic008G018300 Sobic008G018300 Sobic001G387200--Sobic008G018300 Sobic004G256700 Sobic004G256700 Sobic001G387200--Sobic004G256700 Sobic002G255400 Sobic002G255400 Sobic001G387200--Sobic002G255400 Sobic001G387200--Sobic002G420600 Sobic005G019100 Sobic005G019100 Sobic001G387200--Sobic005G019100 Sobic010G105000--Sobic003G234500 Sobic007G086900 Sobic007G086900 Sobic010G105000--Sobic007G086900 Sobic010G105000--Sobic003G212000 Sobic003G024400 Sobic003G024400 Sobic010G105000--Sobic003G024400 Sobic010G105000--Sobic005G145201 Sobic010G105000--Sobic003G380300 Sobic006G270000 Sobic006G270000 Sobic010G105000--Sobic006G270000 Sobic002G103800 Sobic002G103800 Sobic010G105000--Sobic002G103800 Sobic008G071300 Sobic008G071300 Sobic010G105000--Sobic008G071300 Sobic004G173700--Sobic003G137600 Sobic004G173700--Sobic006G120900 Sobic004G173700--Sobic002G420600 Sobic004G173700--Sobic001G387200 Sobic001G365700 Sobic001G365700 Sobic004G173700--Sobic001G365700 Sobic004G173700--Sobic003G129900 Sobic007G212100 Sobic007G212100 Sobic004G173700--Sobic007G212100 Sobic001G303900 Sobic001G303900 Sobic004G173700--Sobic001G303900 Sobic004G173700--Sobic008G018300 Sobic003G234500--Sobic003G212000 Sobic003G234500--Sobic008G071300 Sobic006G267100 Sobic006G267100 Sobic003G234500--Sobic006G267100 Sobic005G144000 Sobic005G144000 Sobic003G234500--Sobic005G144000 Sobic002G170100 Sobic002G170100 Sobic003G234500--Sobic002G170100 Sobic009G189700 Sobic009G189700 Sobic003G234500--Sobic009G189700 Sobic004G180100 Sobic004G180100 Sobic003G234500--Sobic004G180100 Sobic008G122800 Sobic008G122800 Sobic003G234500--Sobic008G122800 Sobic003G110932 Sobic003G110932 Sobic003G234500--Sobic003G110932 Sobic003G137600--Sobic004G173700 Sobic003G137600--Sobic003G212000 Sobic003G137600--Sobic003G234500 Sobic003G137600--Sobic006G120900 Sobic002G113200 Sobic002G113200 Sobic003G137600--Sobic002G113200 Sobic003G137600--Sobic001G365700 Sobic003G137600--Sobic007G212100 Sobic003G284100 Sobic003G284100 Sobic003G137600--Sobic003G284100 Sobic003G137600--Sobic009G189700 Sobic003G129900--Sobic001G387200 Sobic003G129900--Sobic004G093600 Sobic003G129900--Sobic006G120900 Sobic003G129900--Sobic005G019100 Sobic003G129900--Sobic004G173700 Sobic003G129900--Sobic004G256700 Sobic003G129900--Sobic002G420600 Sobic003G034900 Sobic003G034900 Sobic003G129900--Sobic003G034900 Sobic001G518500 Sobic001G518500 Sobic003G129900--Sobic001G518500 Sobic001G356200 Sobic001G356200 Sobic002G259700--Sobic001G356200 Sobic003G201500 Sobic003G201500 Sobic002G259700--Sobic003G201500 Sobic002G259700--Sobic003G089100 Sobic002G054700 Sobic002G054700 Sobic002G259700--Sobic002G054700 Sobic002G259700--Sobic006G120900 Sobic002G259700--Sobic001G387200 Sobic002G259700--Sobic002G255400 Sobic004G107100 Sobic004G107100 Sobic002G259700--Sobic004G107100 Sobic002G397900 Sobic002G397900 Sobic002G259700--Sobic002G397900
Octagon: transcription factors


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