Gene annotation
Transcriptome id Sobic.003G129900.1
Synonym Sb03g011050, IDH-V
Functional annotation dehydrogenase, putative, expressed
UniProt C5XH85
Pfam PF00180
Panther DB PTHR11835
NCBI CDD -
KEGG Orthology K00030; isocitrate dehydrogenase (NAD+)
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0000287magnesium ion binding


Orthologs (automatic annotation)
TAIR AT5G03290 : isocitrate dehydrogenase V
RAP-DB (Rice) LOC_Os01g16900.1 : dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a024128 , Zm00025a035210 , Zm00025a052936
Brachypodium PNT68615 , KQJ99452
Barley HORVU6Hr1G047360.4 , HORVU6Hr1G047360.5 , HORVU6Hr1G047360.1 , HORVU6Hr1G047360.2 , HORVU6Hr1G047360.3
Wheat TraesCS6A02G198200 , TraesCS6D02G183400 , TraesCS6B02G235000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G129900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G387200 expressed protein -
2 Sobic.004G093600 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
3 Sobic.006G120900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
4 Sobic.005G019100 TRAF-type zinc finger family protein, expressed -
5 Sobic.004G173700 SLL1 protein, putative, expressed -
6 Sobic.004G256700 ZAC, putative, expressed K12486: stromal membrane-associated protein
7 Sobic.002G420600 nucleoside-triphosphatase, putative, expressed -
8 Sobic.003G034900 mitochondrial-processing peptidase subunit alpha, mitochondrial precursor, putative, expressed K01412: PMPCA, mitochondrial-processing peptidase subunit alpha
9 Sobic.001G518500 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
10 Sobic.008G018300 expressed protein K17402: small subunit ribosomal protein S23
11 Sobic.001G047600 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
12 Sobic.002G259700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transketolase, putative, expressed K00162: PDHB, pyruvate dehydrogenase E1 component beta subunit
13 Sobic.006G012700 expressed protein -
14 Sobic.003G380300 cytochrome c, putative, expressed K08738: cytochrome c
15 Sobic.002G352200 succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed K01899: succinyl-CoA synthetase alpha subunit
16 Sobic.003G274200 5-nucleotidase surE, putative, expressed K03787: 5'-nucleotidase
17 Sobic.001G457000 ATP synthase gamma chain, putative, expressed K02136: ATPeF1G, ATP5C1, F-type H+-transporting ATPase subunit gamma
18 Sobic.001G408400 phosphatase, putative, expressed K07252: dolichyldiphosphatase
19 Sobic.003G201500 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
20 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A


Gene co-expression network
sample Sobic003G129900 Sobic003G129900 Sobic001G387200 Sobic001G387200 Sobic003G129900--Sobic001G387200 Sobic004G093600 Sobic004G093600 Sobic003G129900--Sobic004G093600 Sobic006G120900 Sobic006G120900 Sobic003G129900--Sobic006G120900 Sobic005G019100 Sobic005G019100 Sobic003G129900--Sobic005G019100 Sobic004G173700 Sobic004G173700 Sobic003G129900--Sobic004G173700 Sobic004G256700 Sobic004G256700 Sobic003G129900--Sobic004G256700 Sobic002G420600 Sobic002G420600 Sobic003G129900--Sobic002G420600 Sobic003G034900 Sobic003G034900 Sobic003G129900--Sobic003G034900 Sobic001G518500 Sobic001G518500 Sobic003G129900--Sobic001G518500 Sobic001G387200--Sobic003G129900 Sobic001G387200--Sobic004G093600 Sobic001G387200--Sobic006G120900 Sobic001G387200--Sobic004G173700 Sobic008G018300 Sobic008G018300 Sobic001G387200--Sobic008G018300 Sobic001G387200--Sobic004G256700 Sobic002G255400 Sobic002G255400 Sobic001G387200--Sobic002G255400 Sobic001G387200--Sobic002G420600 Sobic001G387200--Sobic005G019100 Sobic004G093600--Sobic003G129900 Sobic004G093600--Sobic001G387200 Sobic001G047600 Sobic001G047600 Sobic004G093600--Sobic001G047600 Sobic004G093600--Sobic003G034900 Sobic001G457000 Sobic001G457000 Sobic004G093600--Sobic001G457000 Sobic004G093600--Sobic006G120900 Sobic001G378800 Sobic001G378800 Sobic004G093600--Sobic001G378800 Sobic006G012700 Sobic006G012700 Sobic004G093600--Sobic006G012700 Sobic003G260600 Sobic003G260600 Sobic004G093600--Sobic003G260600 Sobic006G120900--Sobic004G173700 Sobic003G234500 Sobic003G234500 Sobic006G120900--Sobic003G234500 Sobic003G089100 Sobic003G089100 Sobic006G120900--Sobic003G089100 Sobic006G120900--Sobic003G129900 Sobic003G380300 Sobic003G380300 Sobic006G120900--Sobic003G380300 Sobic003G212000 Sobic003G212000 Sobic006G120900--Sobic003G212000 Sobic006G120900--Sobic001G387200 Sobic006G120900--Sobic002G420600 Sobic003G137600 Sobic003G137600 Sobic006G120900--Sobic003G137600 Sobic005G019100--Sobic003G129900 Sobic005G019100--Sobic004G256700 Sobic005G019100--Sobic001G387200 Sobic005G019100--Sobic006G120900 Sobic005G019100--Sobic004G173700 Sobic005G019100--Sobic001G518500 Sobic001G408400 Sobic001G408400 Sobic005G019100--Sobic001G408400 Sobic005G019100--Sobic003G137600 Sobic007G219500 Sobic007G219500 Sobic005G019100--Sobic007G219500 Sobic004G173700--Sobic003G137600 Sobic004G173700--Sobic006G120900 Sobic004G173700--Sobic002G420600 Sobic004G173700--Sobic001G387200 Sobic001G365700 Sobic001G365700 Sobic004G173700--Sobic001G365700 Sobic004G173700--Sobic003G129900 Sobic007G212100 Sobic007G212100 Sobic004G173700--Sobic007G212100 Sobic001G303900 Sobic001G303900 Sobic004G173700--Sobic001G303900 Sobic004G173700--Sobic008G018300 Sobic004G256700--Sobic003G129900 Sobic004G256700--Sobic005G019100 Sobic004G256700--Sobic001G387200 Sobic004G256700--Sobic006G120900 Sobic004G256700--Sobic004G093600 Sobic003G196600 Sobic003G196600 Sobic004G256700--Sobic003G196600 Sobic003G274200 Sobic003G274200 Sobic004G256700--Sobic003G274200 Sobic004G256700--Sobic004G173700 Sobic004G256700--Sobic001G518500 Sobic002G420600--Sobic003G089100 Sobic002G420600--Sobic004G173700 Sobic002G420600--Sobic006G120900 Sobic003G201500 Sobic003G201500 Sobic002G420600--Sobic003G201500 Sobic002G352200 Sobic002G352200 Sobic002G420600--Sobic002G352200 Sobic002G420600--Sobic002G255400 Sobic002G420600--Sobic001G303900 Sobic002G420600--Sobic003G260600 Sobic003G372200 Sobic003G372200 Sobic002G420600--Sobic003G372200 Sobic001G458800 Sobic001G458800 Sobic003G034900--Sobic001G458800 Sobic001G465400 Sobic001G465400 Sobic003G034900--Sobic001G465400 Sobic003G034900--Sobic004G093600 Sobic001G115700 Sobic001G115700 Sobic003G034900--Sobic001G115700 Sobic003G034900--Sobic001G047600 Sobic007G171500 Sobic007G171500 Sobic003G034900--Sobic007G171500 Sobic009G224400 Sobic009G224400 Sobic003G034900--Sobic009G224400 Sobic004G347600 Sobic004G347600 Sobic003G034900--Sobic004G347600 Sobic003G034900--Sobic001G457000 Sobic009G112900 Sobic009G112900 Sobic001G518500--Sobic009G112900 Sobic001G518500--Sobic003G129900 Sobic001G518500--Sobic009G224400 Sobic001G518500--Sobic005G019100 Sobic001G518500--Sobic001G387200 Sobic004G039400 Sobic004G039400 Sobic001G518500--Sobic004G039400 Sobic002G262200 Sobic002G262200 Sobic001G518500--Sobic002G262200 Sobic002G079700 Sobic002G079700 Sobic001G518500--Sobic002G079700 Sobic001G518500--Sobic007G171500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.