Gene annotation
Transcriptome id Sobic.003G201500.1
Synonym VDAC1, Sb03g026350, ATVDAC1
Functional annotation outer mitochondrial membrane porin, putative, expressed
UniProt C5XPG8
Pfam PF01459
Panther DB PTHR11743 PTHR11743:SF33
NCBI CDD KOG3126; Porin/voltage-dependent anion-selective channel protein
KEGG Orthology K15040; voltage-dependent anion channel protein 2
Gene Ontology GO:0005741; mitochondrial outer membrane


Orthologs (automatic annotation)
TAIR AT3G01280 : voltage dependent anion channel 1
RAP-DB (Rice) LOC_Os01g40570.1 : outer mitochondrial membrane porin, putative, expressed
MaizeGDB (Corn) Zm00025a028526 , Zm00025a038421
Brachypodium KQK08481
Barley HORVU3Hr1G051010.1 , HORVU3Hr1G051010.2 , HORVU3Hr1G051010.3 , HORVU3Hr1G051010.4 , HORVU3Hr1G051010.5
Wheat TraesCS3A02G210600 , TraesCS3B02G241200 , TraesCS3D02G213400
Populus -


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cDNA sequences
Sobic.003G201500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G089100 WD domain, G-beta repeat domain containing protein, expressed -
2 Sobic.003G260600 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
3 Sobic.003G372200 AGC_AGC_other_PDK1_Pk61C.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed K06276: 3-phosphoinositide dependent protein kinase-1
4 Sobic.002G420600 nucleoside-triphosphatase, putative, expressed -
5 Sobic.002G255400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K09569: FK506-binding protein 2
6 Sobic.001G378800 fumarate hydratase, mitochondrial precursor, putative, expressed K01679: E4.2.1.2B, fumC, fumarate hydratase, class II
7 Sobic.006G120900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
8 Sobic.001G400000 NAD dependent epimerase/dehydratase family protein, putative, expressed K12448: UXE, UDP-arabinose 4-epimerase
9 Sobic.004G038500 cyclin-related protein, putative, expressed -
10 Sobic.001G303900 CPuORF23 - conserved peptide uORF-containing transcript, expressed K01087: trehalose 6-phosphate phosphatase
11 Sobic.002G259700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transketolase, putative, expressed K00162: PDHB, pyruvate dehydrogenase E1 component beta subunit
12 Sobic.004G107100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CID11, putative, expressed -
13 Sobic.001G356200 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
14 Sobic.004G284800 protein kinase, putative, expressed K08867: WNK, WNK lysine deficient protein kinase
15 Sobic.002G397900 39S ribosomal protein L46, mitochondrial precursor, putative, expressed K17427: large subunit ribosomal protein L46
16 Sobic.001G282200 ribosomal protein L35, putative, expressed -
17 Sobic.001G230801 - -
18 Sobic.003G013700 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
19 Sobic.007G014700 Fructokinase-2 (Zm)(PubMedID : 27208977)@kinase, pfkB family, putative, expressed K00847: E2.7.1.4, fructokinase
20 Sobic.001G280500 abscisic acid insensitive 8, putative, expressed -


Gene co-expression network
sample Sobic003G201500 Sobic003G201500 Sobic003G089100 Sobic003G089100 Sobic003G201500--Sobic003G089100 Sobic003G260600 Sobic003G260600 Sobic003G201500--Sobic003G260600 Sobic003G372200 Sobic003G372200 Sobic003G201500--Sobic003G372200 Sobic002G420600 Sobic002G420600 Sobic003G201500--Sobic002G420600 Sobic002G255400 Sobic002G255400 Sobic003G201500--Sobic002G255400 Sobic001G378800 Sobic001G378800 Sobic003G201500--Sobic001G378800 Sobic006G120900 Sobic006G120900 Sobic003G201500--Sobic006G120900 Sobic001G400000 Sobic001G400000 Sobic003G201500--Sobic001G400000 Sobic004G038500 Sobic004G038500 Sobic003G201500--Sobic004G038500 Sobic003G089100--Sobic003G201500 Sobic003G013700 Sobic003G013700 Sobic003G089100--Sobic003G013700 Sobic003G089100--Sobic003G260600 Sobic003G089100--Sobic002G255400 Sobic004G113600 Sobic004G113600 Sobic003G089100--Sobic004G113600 Sobic003G089100--Sobic001G400000 Sobic003G089100--Sobic002G420600 Sobic005G050400 Sobic005G050400 Sobic003G089100--Sobic005G050400 Sobic001G356200 Sobic001G356200 Sobic003G089100--Sobic001G356200 Sobic003G260600--Sobic002G255400 Sobic003G260600--Sobic003G201500 Sobic003G260600--Sobic003G089100 Sobic008G132200 Sobic008G132200 Sobic003G260600--Sobic008G132200 Sobic003G260600--Sobic001G378800 Sobic003G260600--Sobic003G372200 Sobic003G260600--Sobic002G420600 Sobic008G072500 Sobic008G072500 Sobic003G260600--Sobic008G072500 Sobic007G014700 Sobic007G014700 Sobic003G260600--Sobic007G014700 Sobic003G372200--Sobic001G378800 Sobic004G284800 Sobic004G284800 Sobic003G372200--Sobic004G284800 Sobic003G372200--Sobic003G201500 Sobic003G372200--Sobic003G260600 Sobic003G372200--Sobic003G089100 Sobic003G372200--Sobic002G420600 Sobic002G167100 Sobic002G167100 Sobic003G372200--Sobic002G167100 Sobic006G232800 Sobic006G232800 Sobic003G372200--Sobic006G232800 Sobic002G362500 Sobic002G362500 Sobic003G372200--Sobic002G362500 Sobic002G420600--Sobic003G089100 Sobic004G173700 Sobic004G173700 Sobic002G420600--Sobic004G173700 Sobic002G420600--Sobic006G120900 Sobic002G420600--Sobic003G201500 Sobic002G352200 Sobic002G352200 Sobic002G420600--Sobic002G352200 Sobic002G420600--Sobic002G255400 Sobic001G303900 Sobic001G303900 Sobic002G420600--Sobic001G303900 Sobic002G420600--Sobic003G260600 Sobic002G420600--Sobic003G372200 Sobic002G255400--Sobic003G260600 Sobic002G255400--Sobic003G089100 Sobic002G255400--Sobic007G014700 Sobic008G018300 Sobic008G018300 Sobic002G255400--Sobic008G018300 Sobic002G255400--Sobic002G420600 Sobic002G255400--Sobic003G201500 Sobic002G255400--Sobic003G013700 Sobic002G255400--Sobic002G352200 Sobic001G387200 Sobic001G387200 Sobic002G255400--Sobic001G387200 Sobic001G378800--Sobic006G232800 Sobic003G394500 Sobic003G394500 Sobic001G378800--Sobic003G394500 Sobic001G047600 Sobic001G047600 Sobic001G378800--Sobic001G047600 Sobic004G077300 Sobic004G077300 Sobic001G378800--Sobic004G077300 Sobic001G378800--Sobic001G356200 Sobic001G378800--Sobic003G372200 Sobic001G424800 Sobic001G424800 Sobic001G378800--Sobic001G424800 Sobic001G378800--Sobic003G260600 Sobic004G350700 Sobic004G350700 Sobic001G378800--Sobic004G350700 Sobic006G120900--Sobic004G173700 Sobic003G234500 Sobic003G234500 Sobic006G120900--Sobic003G234500 Sobic006G120900--Sobic003G089100 Sobic003G129900 Sobic003G129900 Sobic006G120900--Sobic003G129900 Sobic003G380300 Sobic003G380300 Sobic006G120900--Sobic003G380300 Sobic003G212000 Sobic003G212000 Sobic006G120900--Sobic003G212000 Sobic006G120900--Sobic001G387200 Sobic006G120900--Sobic002G420600 Sobic003G137600 Sobic003G137600 Sobic006G120900--Sobic003G137600 Sobic001G400000--Sobic004G113600 Sobic001G112600 Sobic001G112600 Sobic001G400000--Sobic001G112600 Sobic001G384200 Sobic001G384200 Sobic001G400000--Sobic001G384200 Sobic001G400000--Sobic005G050400 Sobic003G244400 Sobic003G244400 Sobic001G400000--Sobic003G244400 Sobic006G265800 Sobic006G265800 Sobic001G400000--Sobic006G265800 Sobic004G007400 Sobic004G007400 Sobic001G400000--Sobic004G007400 Sobic008G055600 Sobic008G055600 Sobic001G400000--Sobic008G055600 Sobic008G156600 Sobic008G156600 Sobic001G400000--Sobic008G156600 Sobic001G072000 Sobic001G072000 Sobic004G038500--Sobic001G072000 Sobic004G279200 Sobic004G279200 Sobic004G038500--Sobic004G279200 Sobic001G230801 Sobic001G230801 Sobic004G038500--Sobic001G230801 Sobic006G267100 Sobic006G267100 Sobic004G038500--Sobic006G267100 Sobic004G074900 Sobic004G074900 Sobic004G038500--Sobic004G074900 Sobic001G322400 Sobic001G322400 Sobic004G038500--Sobic001G322400 Sobic003G005700 Sobic003G005700 Sobic004G038500--Sobic003G005700 Sobic004G038500--Sobic005G050400 Sobic004G038500--Sobic001G112600
Octagon: transcription factors


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