Gene annotation
Transcriptome id Sobic.006G120900.2,Sobic.006G120900.1
Synonym IDH1, Sb06g020150, IDH-I
Functional annotation dehydrogenase, putative, expressed
UniProt A0A1B6PLK5 , A0A1B6PLM9
Pfam PF00180
Panther DB PTHR11835 PTHR11835:SF51
NCBI CDD -
KEGG Orthology K00030; isocitrate dehydrogenase (NAD+)
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0000287magnesium ion binding


Orthologs (automatic annotation)
TAIR AT4G35260 : isocitrate dehydrogenase 1
RAP-DB (Rice) LOC_Os02g38200.1 : dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a056307 , Zm00025a032608 , Zm00025a031832 , Zm00025a021313
Brachypodium KQJ83166 , KQJ83167 , KQK00162
Barley HORVU2Hr1G082800.1 , HORVU2Hr1G082800.2 , HORVU2Hr1G082800.3
Wheat TraesCS2B02G356300 , TraesCS6B02G238500 , TraesCS2B02G356300 , TraesCS6A02G209600 , TraesCS2A02G325600 , TraesCS6D02G192900 , TraesCS2D02G337100 , TraesCS2D02G337100 , TraesCS2A02G325600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G173700 SLL1 protein, putative, expressed -
2 Sobic.003G234500 CA(PubMedID : 19549309)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
3 Sobic.003G089100 WD domain, G-beta repeat domain containing protein, expressed -
4 Sobic.003G129900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
5 Sobic.003G380300 cytochrome c, putative, expressed K08738: cytochrome c
6 Sobic.003G212000 OsCML12 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
7 Sobic.001G387200 expressed protein -
8 Sobic.002G420600 nucleoside-triphosphatase, putative, expressed -
9 Sobic.003G137600 CHIT10 - Chitinase family protein precursor, expressed -
10 Sobic.004G176200 SacI homology domain containing protein, expressed -
11 Sobic.001G303900 CPuORF23 - conserved peptide uORF-containing transcript, expressed K01087: trehalose 6-phosphate phosphatase
12 Sobic.003G201500 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
13 Sobic.004G093600 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
14 Sobic.001G408400 phosphatase, putative, expressed K07252: dolichyldiphosphatase
15 Sobic.008G071300 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
16 Sobic.002G113200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.004G107100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CID11, putative, expressed -
18 Sobic.009G189700 - -
19 Sobic.001G356200 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
20 Sobic.002G259700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transketolase, putative, expressed K00162: PDHB, pyruvate dehydrogenase E1 component beta subunit


Gene co-expression network
sample Sobic006G120900 Sobic006G120900 Sobic004G173700 Sobic004G173700 Sobic006G120900--Sobic004G173700 Sobic003G234500 Sobic003G234500 Sobic006G120900--Sobic003G234500 Sobic003G089100 Sobic003G089100 Sobic006G120900--Sobic003G089100 Sobic003G129900 Sobic003G129900 Sobic006G120900--Sobic003G129900 Sobic003G380300 Sobic003G380300 Sobic006G120900--Sobic003G380300 Sobic003G212000 Sobic003G212000 Sobic006G120900--Sobic003G212000 Sobic001G387200 Sobic001G387200 Sobic006G120900--Sobic001G387200 Sobic002G420600 Sobic002G420600 Sobic006G120900--Sobic002G420600 Sobic003G137600 Sobic003G137600 Sobic006G120900--Sobic003G137600 Sobic004G173700--Sobic003G137600 Sobic004G173700--Sobic006G120900 Sobic004G173700--Sobic002G420600 Sobic004G173700--Sobic001G387200 Sobic001G365700 Sobic001G365700 Sobic004G173700--Sobic001G365700 Sobic004G173700--Sobic003G129900 Sobic007G212100 Sobic007G212100 Sobic004G173700--Sobic007G212100 Sobic001G303900 Sobic001G303900 Sobic004G173700--Sobic001G303900 Sobic008G018300 Sobic008G018300 Sobic004G173700--Sobic008G018300 Sobic003G234500--Sobic003G212000 Sobic008G071300 Sobic008G071300 Sobic003G234500--Sobic008G071300 Sobic006G267100 Sobic006G267100 Sobic003G234500--Sobic006G267100 Sobic005G144000 Sobic005G144000 Sobic003G234500--Sobic005G144000 Sobic002G170100 Sobic002G170100 Sobic003G234500--Sobic002G170100 Sobic009G189700 Sobic009G189700 Sobic003G234500--Sobic009G189700 Sobic004G180100 Sobic004G180100 Sobic003G234500--Sobic004G180100 Sobic008G122800 Sobic008G122800 Sobic003G234500--Sobic008G122800 Sobic003G110932 Sobic003G110932 Sobic003G234500--Sobic003G110932 Sobic003G201500 Sobic003G201500 Sobic003G089100--Sobic003G201500 Sobic003G013700 Sobic003G013700 Sobic003G089100--Sobic003G013700 Sobic003G260600 Sobic003G260600 Sobic003G089100--Sobic003G260600 Sobic002G255400 Sobic002G255400 Sobic003G089100--Sobic002G255400 Sobic004G113600 Sobic004G113600 Sobic003G089100--Sobic004G113600 Sobic001G400000 Sobic001G400000 Sobic003G089100--Sobic001G400000 Sobic003G089100--Sobic002G420600 Sobic005G050400 Sobic005G050400 Sobic003G089100--Sobic005G050400 Sobic001G356200 Sobic001G356200 Sobic003G089100--Sobic001G356200 Sobic003G129900--Sobic001G387200 Sobic004G093600 Sobic004G093600 Sobic003G129900--Sobic004G093600 Sobic003G129900--Sobic006G120900 Sobic005G019100 Sobic005G019100 Sobic003G129900--Sobic005G019100 Sobic003G129900--Sobic004G173700 Sobic004G256700 Sobic004G256700 Sobic003G129900--Sobic004G256700 Sobic003G129900--Sobic002G420600 Sobic003G034900 Sobic003G034900 Sobic003G129900--Sobic003G034900 Sobic001G518500 Sobic001G518500 Sobic003G129900--Sobic001G518500 Sobic003G380300--Sobic006G120900 Sobic001G408400 Sobic001G408400 Sobic003G380300--Sobic001G408400 Sobic003G380300--Sobic001G387200 Sobic010G105000 Sobic010G105000 Sobic003G380300--Sobic010G105000 Sobic003G380300--Sobic004G173700 Sobic003G380300--Sobic003G234500 Sobic003G380300--Sobic003G137600 Sobic003G380300--Sobic003G129900 Sobic002G259700 Sobic002G259700 Sobic003G380300--Sobic002G259700 Sobic003G212000--Sobic003G234500 Sobic003G212000--Sobic008G071300 Sobic002G113200 Sobic002G113200 Sobic003G212000--Sobic002G113200 Sobic003G212000--Sobic006G267100 Sobic003G212000--Sobic009G189700 Sobic003G212000--Sobic005G144000 Sobic001G503600 Sobic001G503600 Sobic003G212000--Sobic001G503600 Sobic002G389600 Sobic002G389600 Sobic003G212000--Sobic002G389600 Sobic003G212000--Sobic002G170100 Sobic001G387200--Sobic003G129900 Sobic001G387200--Sobic004G093600 Sobic001G387200--Sobic006G120900 Sobic001G387200--Sobic004G173700 Sobic001G387200--Sobic008G018300 Sobic001G387200--Sobic004G256700 Sobic001G387200--Sobic002G255400 Sobic001G387200--Sobic002G420600 Sobic001G387200--Sobic005G019100 Sobic002G420600--Sobic003G089100 Sobic002G420600--Sobic004G173700 Sobic002G420600--Sobic006G120900 Sobic002G420600--Sobic003G201500 Sobic002G352200 Sobic002G352200 Sobic002G420600--Sobic002G352200 Sobic002G420600--Sobic002G255400 Sobic002G420600--Sobic001G303900 Sobic002G420600--Sobic003G260600 Sobic003G372200 Sobic003G372200 Sobic002G420600--Sobic003G372200 Sobic003G137600--Sobic004G173700 Sobic003G137600--Sobic003G212000 Sobic003G137600--Sobic003G234500 Sobic003G137600--Sobic006G120900 Sobic003G137600--Sobic002G113200 Sobic003G137600--Sobic001G365700 Sobic003G137600--Sobic007G212100 Sobic003G284100 Sobic003G284100 Sobic003G137600--Sobic003G284100 Sobic003G137600--Sobic009G189700
Octagon: transcription factors


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