Gene annotation
Transcriptome id Sobic.003G308800.2,Sobic.003G308800.1,Sobic.003G308800.3
Synonym Sb03g035730
Functional annotation transmembrane protein 56, putative, expressed
UniProt C5XKY7
Pfam PF03798
Panther DB PTHR13439 PTHR13439:SF18
NCBI CDD KOG4561; Uncharacterized conserved protein, contains TBC domain
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G31300 : TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
RAP-DB (Rice) LOC_Os01g56230.2,LOC_Os01g56230.1 : transmembrane protein 56, putative, expressed
MaizeGDB (Corn) Zm00025a039932
Brachypodium PNT72933 , PNT72932 , PNT72931 , KQK09940 , KQK09939 , KQK05458 , KQK05455 , KQK05457 , KQK05456
Barley HORVU3Hr1G074730.9 , HORVU3Hr1G074730.1 , HORVU3Hr1G074730.2 , HORVU3Hr1G074730.3 , HORVU3Hr1G074730.4 , HORVU3Hr1G074730.5 , HORVU3Hr1G074730.6 , HORVU3Hr1G074730.7 , HORVU3Hr1G074730.22 , HORVU3Hr1G074730.21 , HORVU3Hr1G074730.20 , HORVU3Hr1G074730.12 , HORVU3Hr1G074730.13 , HORVU3Hr1G074730.10 , HORVU3Hr1G074730.11 , HORVU3Hr1G074730.16 , HORVU3Hr1G074730.17 , HORVU3Hr1G074730.14 , HORVU3Hr1G074730.15 , HORVU3Hr1G074730.18 , HORVU3Hr1G074730.19 , HORVU3Hr1G074730.8
Wheat TraesCS3D02G303300 , TraesCS3A02G298600 , TraesCS3B02G337900 , TraesCS3B02G337900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G176200 SacI homology domain containing protein, expressed -
2 Sobic.006G120900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
3 Sobic.003G380300 cytochrome c, putative, expressed K08738: cytochrome c
4 Sobic.003G129900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
5 Sobic.001G387200 expressed protein -
6 Sobic.006G166400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ELMO/CED-12 family protein, putative, expressed -
7 Sobic.001G408400 phosphatase, putative, expressed K07252: dolichyldiphosphatase
8 Sobic.010G095400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@urea active transporter, putative, expressed -
9 Sobic.002G007800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
10 Sobic.007G138100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
11 Sobic.003G201500 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
12 Sobic.004G256700 ZAC, putative, expressed K12486: stromal membrane-associated protein
13 Sobic.004G093600 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
14 Sobic.004G074900 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
15 Sobic.008G141600 expressed protein -
16 Sobic.003G040700 choline/ethanolamine kinase, putative, expressed K14156: choline/ethanolamine kinase
17 Sobic.001G424800 myosin heavy chain-related, putative, expressed -
18 Sobic.002G368100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@COBRA, putative, expressed -
19 Sobic.003G377000 powdery mildew resistant protein 5, putative, expressed -
20 Sobic.004G074600 zinc finger, C3HC4 type domain containing protein, expressed -


Gene co-expression network
sample Sobic003G308800 Sobic003G308800 Sobic004G176200 Sobic004G176200 Sobic003G308800--Sobic004G176200 Sobic006G120900 Sobic006G120900 Sobic003G308800--Sobic006G120900 Sobic003G380300 Sobic003G380300 Sobic003G308800--Sobic003G380300 Sobic003G129900 Sobic003G129900 Sobic003G308800--Sobic003G129900 Sobic001G387200 Sobic001G387200 Sobic003G308800--Sobic001G387200 Sobic006G166400 Sobic006G166400 Sobic003G308800--Sobic006G166400 Sobic001G408400 Sobic001G408400 Sobic003G308800--Sobic001G408400 Sobic010G095400 Sobic010G095400 Sobic003G308800--Sobic010G095400 Sobic002G007800 Sobic002G007800 Sobic003G308800--Sobic002G007800 Sobic003G385300 Sobic003G385300 Sobic004G176200--Sobic003G385300 Sobic002G103800 Sobic002G103800 Sobic004G176200--Sobic002G103800 Sobic007G004300 Sobic007G004300 Sobic004G176200--Sobic007G004300 Sobic004G077300 Sobic004G077300 Sobic004G176200--Sobic004G077300 Sobic004G064200 Sobic004G064200 Sobic004G176200--Sobic004G064200 Sobic001G257800 Sobic001G257800 Sobic004G176200--Sobic001G257800 Sobic002G180800 Sobic002G180800 Sobic004G176200--Sobic002G180800 Sobic001G356200 Sobic001G356200 Sobic004G176200--Sobic001G356200 Sobic006G080700 Sobic006G080700 Sobic004G176200--Sobic006G080700 Sobic004G173700 Sobic004G173700 Sobic006G120900--Sobic004G173700 Sobic003G234500 Sobic003G234500 Sobic006G120900--Sobic003G234500 Sobic003G089100 Sobic003G089100 Sobic006G120900--Sobic003G089100 Sobic006G120900--Sobic003G129900 Sobic006G120900--Sobic003G380300 Sobic003G212000 Sobic003G212000 Sobic006G120900--Sobic003G212000 Sobic006G120900--Sobic001G387200 Sobic002G420600 Sobic002G420600 Sobic006G120900--Sobic002G420600 Sobic003G137600 Sobic003G137600 Sobic006G120900--Sobic003G137600 Sobic003G380300--Sobic006G120900 Sobic003G380300--Sobic001G408400 Sobic003G380300--Sobic001G387200 Sobic010G105000 Sobic010G105000 Sobic003G380300--Sobic010G105000 Sobic003G380300--Sobic004G173700 Sobic003G380300--Sobic003G234500 Sobic003G380300--Sobic003G137600 Sobic003G380300--Sobic003G129900 Sobic002G259700 Sobic002G259700 Sobic003G380300--Sobic002G259700 Sobic003G129900--Sobic001G387200 Sobic004G093600 Sobic004G093600 Sobic003G129900--Sobic004G093600 Sobic003G129900--Sobic006G120900 Sobic005G019100 Sobic005G019100 Sobic003G129900--Sobic005G019100 Sobic003G129900--Sobic004G173700 Sobic004G256700 Sobic004G256700 Sobic003G129900--Sobic004G256700 Sobic003G129900--Sobic002G420600 Sobic003G034900 Sobic003G034900 Sobic003G129900--Sobic003G034900 Sobic001G518500 Sobic001G518500 Sobic003G129900--Sobic001G518500 Sobic001G387200--Sobic003G129900 Sobic001G387200--Sobic004G093600 Sobic001G387200--Sobic006G120900 Sobic001G387200--Sobic004G173700 Sobic008G018300 Sobic008G018300 Sobic001G387200--Sobic008G018300 Sobic001G387200--Sobic004G256700 Sobic002G255400 Sobic002G255400 Sobic001G387200--Sobic002G255400 Sobic001G387200--Sobic002G420600 Sobic001G387200--Sobic005G019100 Sobic003G306500 Sobic003G306500 Sobic006G166400--Sobic003G306500 Sobic001G367301 Sobic001G367301 Sobic006G166400--Sobic001G367301 Sobic006G166400--Sobic006G080700 Sobic004G134900 Sobic004G134900 Sobic006G166400--Sobic004G134900 Sobic005G110460 Sobic005G110460 Sobic006G166400--Sobic005G110460 Sobic001G225800 Sobic001G225800 Sobic006G166400--Sobic001G225800 Sobic006G267100 Sobic006G267100 Sobic006G166400--Sobic006G267100 Sobic004G074600 Sobic004G074600 Sobic006G166400--Sobic004G074600 Sobic001G103100 Sobic001G103100 Sobic006G166400--Sobic001G103100 Sobic001G408400--Sobic006G120900 Sobic001G408400--Sobic002G420600 Sobic001G408400--Sobic003G380300 Sobic010G253400 Sobic010G253400 Sobic001G408400--Sobic010G253400 Sobic001G408400--Sobic003G137600 Sobic008G141600 Sobic008G141600 Sobic001G408400--Sobic008G141600 Sobic001G408400--Sobic003G234500 Sobic005G145201 Sobic005G145201 Sobic001G408400--Sobic005G145201 Sobic001G408400--Sobic004G173700 Sobic010G095400--Sobic004G176200 Sobic010G095400--Sobic002G007800 Sobic002G368100 Sobic002G368100 Sobic010G095400--Sobic002G368100 Sobic004G074900 Sobic004G074900 Sobic010G095400--Sobic004G074900 Sobic003G238250 Sobic003G238250 Sobic010G095400--Sobic003G238250 Sobic007G101600 Sobic007G101600 Sobic010G095400--Sobic007G101600 Sobic010G095400--Sobic008G141600 Sobic010G006800 Sobic010G006800 Sobic010G095400--Sobic010G006800 Sobic010G095400--Sobic002G103800 Sobic002G304700 Sobic002G304700 Sobic002G007800--Sobic002G304700 Sobic009G106700 Sobic009G106700 Sobic002G007800--Sobic009G106700 Sobic010G160300 Sobic010G160300 Sobic002G007800--Sobic010G160300 Sobic002G007800--Sobic010G095400 Sobic002G007800--Sobic006G166400 Sobic001G501900 Sobic001G501900 Sobic002G007800--Sobic001G501900 Sobic002G057400 Sobic002G057400 Sobic002G007800--Sobic002G057400 Sobic003G211800 Sobic003G211800 Sobic002G007800--Sobic003G211800 Sobic002G007800--Sobic003G385300
Octagon: transcription factors


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