Gene annotation
Transcriptome id Sobic.007G219500.1
Synonym Sb07g028600, ATHAP5B, HAP5B, SbNF-YC9, Nuclear Factor Y, NF-YC2
Functional annotation tentative name (PubMedID : 31536532)
core histone H2A/H2B/H3/H4, putative, expressed
UniProt C5YJA9
Pfam PF00808
Panther DB PTHR10252 PTHR10252:SF46
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G56170 : nuclear factor Y, subunit C2
RAP-DB (Rice) LOC_Os08g38780.1 : core histone H2A/H2B/H3/H4, putative, expressed
MaizeGDB (Corn) Zm00025a014174 , Zm00025a004990 , Zm00025a033737 , Zm00025a001598 , Zm00025a047395
Brachypodium KQJ98815 , KQK22549 , KQJ90692 , PNT77721 , PNT77720
Barley HORVU7Hr1G048760.4 , HORVU7Hr1G048760.5 , HORVU7Hr1G048760.6 , HORVU7Hr1G048760.2 , HORVU4Hr1G062890.1 , HORVU4Hr1G062890.3 , HORVU4Hr1G062890.2 , HORVU4Hr1G062890.5 , HORVU4Hr1G062890.4 , HORVU7Hr1G048760.3
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G113200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.003G284100 expressed protein -
3 Sobic.004G173700 SLL1 protein, putative, expressed -
4 Sobic.003G005100 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
5 Sobic.008G188400 GNS1/SUR4 membrane family protein, putative, expressed -
6 Sobic.003G212000 OsCML12 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
7 Sobic.010G159000 expressed protein -
8 Sobic.005G019100 TRAF-type zinc finger family protein, expressed -
9 Sobic.004G247700 expressed protein -
10 Sobic.002G397900 39S ribosomal protein L46, mitochondrial precursor, putative, expressed K17427: large subunit ribosomal protein L46
11 Sobic.002G345000 expressed protein -
12 Sobic.002G228900 RNA recognition motif containing protein, putative, expressed -
13 Sobic.003G335300 E2F-related protein, putative, expressed -
14 Sobic.003G202400 expressed protein -
15 Sobic.004G100100 expressed protein -
16 Sobic.010G225201 - -
17 Sobic.006G120900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
18 Sobic.003G137600 CHIT10 - Chitinase family protein precursor, expressed -
19 Sobic.001G408400 phosphatase, putative, expressed K07252: dolichyldiphosphatase
20 Sobic.007G141100 expressed protein K18179: cytochrome c oxidase assembly factor 6


Gene co-expression network
sample Sobic007G219500 Sobic007G219500 Sobic002G113200 Sobic002G113200 Sobic007G219500--Sobic002G113200 Sobic003G284100 Sobic003G284100 Sobic007G219500--Sobic003G284100 Sobic004G173700 Sobic004G173700 Sobic007G219500--Sobic004G173700 Sobic003G005100 Sobic003G005100 Sobic007G219500--Sobic003G005100 Sobic008G188400 Sobic008G188400 Sobic007G219500--Sobic008G188400 Sobic003G212000 Sobic003G212000 Sobic007G219500--Sobic003G212000 Sobic010G159000 Sobic010G159000 Sobic007G219500--Sobic010G159000 Sobic005G019100 Sobic005G019100 Sobic007G219500--Sobic005G019100 Sobic004G247700 Sobic004G247700 Sobic007G219500--Sobic004G247700 Sobic002G113200--Sobic003G212000 Sobic008G071300 Sobic008G071300 Sobic002G113200--Sobic008G071300 Sobic003G234500 Sobic003G234500 Sobic002G113200--Sobic003G234500 Sobic009G157800 Sobic009G157800 Sobic002G113200--Sobic009G157800 Sobic004G279200 Sobic004G279200 Sobic002G113200--Sobic004G279200 Sobic001G503600 Sobic001G503600 Sobic002G113200--Sobic001G503600 Sobic006G267100 Sobic006G267100 Sobic002G113200--Sobic006G267100 Sobic002G113200--Sobic003G284100 Sobic010G043250 Sobic010G043250 Sobic002G113200--Sobic010G043250 Sobic003G284100--Sobic003G212000 Sobic003G284100--Sobic002G113200 Sobic003G013700 Sobic003G013700 Sobic003G284100--Sobic003G013700 Sobic003G089100 Sobic003G089100 Sobic003G284100--Sobic003G089100 Sobic006G070564 Sobic006G070564 Sobic003G284100--Sobic006G070564 Sobic003G284100--Sobic004G279200 Sobic004G247500 Sobic004G247500 Sobic003G284100--Sobic004G247500 Sobic003G284100--Sobic009G157800 Sobic003G137600 Sobic003G137600 Sobic003G284100--Sobic003G137600 Sobic004G173700--Sobic003G137600 Sobic006G120900 Sobic006G120900 Sobic004G173700--Sobic006G120900 Sobic002G420600 Sobic002G420600 Sobic004G173700--Sobic002G420600 Sobic001G387200 Sobic001G387200 Sobic004G173700--Sobic001G387200 Sobic001G365700 Sobic001G365700 Sobic004G173700--Sobic001G365700 Sobic003G129900 Sobic003G129900 Sobic004G173700--Sobic003G129900 Sobic007G212100 Sobic007G212100 Sobic004G173700--Sobic007G212100 Sobic001G303900 Sobic001G303900 Sobic004G173700--Sobic001G303900 Sobic008G018300 Sobic008G018300 Sobic004G173700--Sobic008G018300 Sobic003G005100--Sobic002G113200 Sobic003G005100--Sobic003G212000 Sobic006G252400 Sobic006G252400 Sobic003G005100--Sobic006G252400 Sobic003G005100--Sobic003G284100 Sobic010G161000 Sobic010G161000 Sobic003G005100--Sobic010G161000 Sobic003G005100--Sobic003G234500 Sobic003G353700 Sobic003G353700 Sobic003G005100--Sobic003G353700 Sobic003G005100--Sobic007G219500 Sobic004G259300 Sobic004G259300 Sobic003G005100--Sobic004G259300 Sobic008G188400--Sobic004G247700 Sobic001G482800 Sobic001G482800 Sobic008G188400--Sobic001G482800 Sobic004G232500 Sobic004G232500 Sobic008G188400--Sobic004G232500 Sobic008G188400--Sobic001G365700 Sobic003G335300 Sobic003G335300 Sobic008G188400--Sobic003G335300 Sobic008G188400--Sobic007G219500 Sobic008G188400--Sobic004G173700 Sobic008G188400--Sobic003G284100 Sobic008G040400 Sobic008G040400 Sobic008G188400--Sobic008G040400 Sobic003G212000--Sobic003G234500 Sobic003G212000--Sobic008G071300 Sobic003G212000--Sobic002G113200 Sobic003G212000--Sobic006G267100 Sobic009G189700 Sobic009G189700 Sobic003G212000--Sobic009G189700 Sobic005G144000 Sobic005G144000 Sobic003G212000--Sobic005G144000 Sobic003G212000--Sobic001G503600 Sobic002G389600 Sobic002G389600 Sobic003G212000--Sobic002G389600 Sobic002G170100 Sobic002G170100 Sobic003G212000--Sobic002G170100 Sobic010G159000--Sobic007G219500 Sobic002G345000 Sobic002G345000 Sobic010G159000--Sobic002G345000 Sobic010G225201 Sobic010G225201 Sobic010G159000--Sobic010G225201 Sobic010G159000--Sobic005G019100 Sobic003G202400 Sobic003G202400 Sobic010G159000--Sobic003G202400 Sobic010G039000 Sobic010G039000 Sobic010G159000--Sobic010G039000 Sobic010G159000--Sobic003G212000 Sobic002G034750 Sobic002G034750 Sobic010G159000--Sobic002G034750 Sobic010G159000--Sobic009G157800 Sobic005G019100--Sobic003G129900 Sobic004G256700 Sobic004G256700 Sobic005G019100--Sobic004G256700 Sobic005G019100--Sobic001G387200 Sobic005G019100--Sobic006G120900 Sobic005G019100--Sobic004G173700 Sobic001G518500 Sobic001G518500 Sobic005G019100--Sobic001G518500 Sobic001G408400 Sobic001G408400 Sobic005G019100--Sobic001G408400 Sobic005G019100--Sobic003G137600 Sobic005G019100--Sobic007G219500 Sobic004G247700--Sobic001G482800 Sobic004G247700--Sobic008G188400 Sobic004G247700--Sobic003G212000 Sobic004G247700--Sobic002G113200 Sobic004G247700--Sobic003G137600 Sobic004G247700--Sobic001G365700 Sobic007G138100 Sobic007G138100 Sobic004G247700--Sobic007G138100 Sobic004G247700--Sobic003G284100 Sobic004G247700--Sobic004G247500
Octagon: transcription factors


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