Gene annotation
Transcriptome id Sobic.010G159000.1
Synonym Sb10g021140
Functional annotation expressed protein
UniProt A0A194YKK9
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os06g34730.1 : expressed protein
MaizeGDB (Corn) Zm00025a050958
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G219500 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed -
2 Sobic.002G345000 expressed protein -
3 Sobic.010G225201 - -
4 Sobic.005G019100 TRAF-type zinc finger family protein, expressed -
5 Sobic.003G202400 expressed protein -
6 Sobic.010G039000 expressed protein -
7 Sobic.003G212000 OsCML12 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
8 Sobic.002G034750 - -
9 Sobic.009G157800 transporter family protein, putative, expressed -
10 Sobic.003G139200 - -
11 Sobic.002G113200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.003G284100 expressed protein -
13 Sobic.006G120900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
14 Sobic.009G176400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
15 Sobic.008G188400 GNS1/SUR4 membrane family protein, putative, expressed -
16 Sobic.004G173700 SLL1 protein, putative, expressed -
17 Sobic.003G234500 CA(PubMedID : 19549309)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
18 Sobic.003G089100 WD domain, G-beta repeat domain containing protein, expressed -
19 Sobic.003G005100 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
20 Sobic.003G137600 CHIT10 - Chitinase family protein precursor, expressed -


Gene co-expression network
sample Sobic010G159000 Sobic010G159000 Sobic007G219500 Sobic007G219500 Sobic010G159000--Sobic007G219500 Sobic002G345000 Sobic002G345000 Sobic010G159000--Sobic002G345000 Sobic010G225201 Sobic010G225201 Sobic010G159000--Sobic010G225201 Sobic005G019100 Sobic005G019100 Sobic010G159000--Sobic005G019100 Sobic003G202400 Sobic003G202400 Sobic010G159000--Sobic003G202400 Sobic010G039000 Sobic010G039000 Sobic010G159000--Sobic010G039000 Sobic003G212000 Sobic003G212000 Sobic010G159000--Sobic003G212000 Sobic002G034750 Sobic002G034750 Sobic010G159000--Sobic002G034750 Sobic009G157800 Sobic009G157800 Sobic010G159000--Sobic009G157800 Sobic002G113200 Sobic002G113200 Sobic007G219500--Sobic002G113200 Sobic003G284100 Sobic003G284100 Sobic007G219500--Sobic003G284100 Sobic004G173700 Sobic004G173700 Sobic007G219500--Sobic004G173700 Sobic003G005100 Sobic003G005100 Sobic007G219500--Sobic003G005100 Sobic008G188400 Sobic008G188400 Sobic007G219500--Sobic008G188400 Sobic007G219500--Sobic003G212000 Sobic007G219500--Sobic010G159000 Sobic007G219500--Sobic005G019100 Sobic004G247700 Sobic004G247700 Sobic007G219500--Sobic004G247700 Sobic002G345000--Sobic003G202400 Sobic003G137600 Sobic003G137600 Sobic002G345000--Sobic003G137600 Sobic002G345000--Sobic007G219500 Sobic002G345000--Sobic003G212000 Sobic002G345000--Sobic010G225201 Sobic004G100100 Sobic004G100100 Sobic002G345000--Sobic004G100100 Sobic002G345000--Sobic004G173700 Sobic002G345000--Sobic003G284100 Sobic004G165200 Sobic004G165200 Sobic002G345000--Sobic004G165200 Sobic010G225201--Sobic002G034750 Sobic010G225201--Sobic010G039000 Sobic001G504500 Sobic001G504500 Sobic010G225201--Sobic001G504500 Sobic008G006000 Sobic008G006000 Sobic010G225201--Sobic008G006000 Sobic010G255900 Sobic010G255900 Sobic010G225201--Sobic010G255900 Sobic002G397900 Sobic002G397900 Sobic010G225201--Sobic002G397900 Sobic010G225201--Sobic004G100100 Sobic005G170000 Sobic005G170000 Sobic010G225201--Sobic005G170000 Sobic010G225201--Sobic007G219500 Sobic003G129900 Sobic003G129900 Sobic005G019100--Sobic003G129900 Sobic004G256700 Sobic004G256700 Sobic005G019100--Sobic004G256700 Sobic001G387200 Sobic001G387200 Sobic005G019100--Sobic001G387200 Sobic006G120900 Sobic006G120900 Sobic005G019100--Sobic006G120900 Sobic005G019100--Sobic004G173700 Sobic001G518500 Sobic001G518500 Sobic005G019100--Sobic001G518500 Sobic001G408400 Sobic001G408400 Sobic005G019100--Sobic001G408400 Sobic005G019100--Sobic003G137600 Sobic005G019100--Sobic007G219500 Sobic003G089100 Sobic003G089100 Sobic003G202400--Sobic003G089100 Sobic003G202400--Sobic003G212000 Sobic002G420600 Sobic002G420600 Sobic003G202400--Sobic002G420600 Sobic003G202400--Sobic003G137600 Sobic003G234500 Sobic003G234500 Sobic003G202400--Sobic003G234500 Sobic003G202400--Sobic002G345000 Sobic003G202400--Sobic003G284100 Sobic003G013700 Sobic003G013700 Sobic003G202400--Sobic003G013700 Sobic007G014700 Sobic007G014700 Sobic003G202400--Sobic007G014700 Sobic010G039000--Sobic010G225201 Sobic009G050000 Sobic009G050000 Sobic010G039000--Sobic009G050000 Sobic009G077100 Sobic009G077100 Sobic010G039000--Sobic009G077100 Sobic009G218000 Sobic009G218000 Sobic010G039000--Sobic009G218000 Sobic010G194200 Sobic010G194200 Sobic010G039000--Sobic010G194200 Sobic010G039000--Sobic002G345000 Sobic004G011433 Sobic004G011433 Sobic010G039000--Sobic004G011433 Sobic010G039000--Sobic007G219500 Sobic001G031800 Sobic001G031800 Sobic010G039000--Sobic001G031800 Sobic003G212000--Sobic003G234500 Sobic008G071300 Sobic008G071300 Sobic003G212000--Sobic008G071300 Sobic003G212000--Sobic002G113200 Sobic006G267100 Sobic006G267100 Sobic003G212000--Sobic006G267100 Sobic009G189700 Sobic009G189700 Sobic003G212000--Sobic009G189700 Sobic005G144000 Sobic005G144000 Sobic003G212000--Sobic005G144000 Sobic001G503600 Sobic001G503600 Sobic003G212000--Sobic001G503600 Sobic002G389600 Sobic002G389600 Sobic003G212000--Sobic002G389600 Sobic002G170100 Sobic002G170100 Sobic003G212000--Sobic002G170100 Sobic002G034750--Sobic010G225201 Sobic004G349450 Sobic004G349450 Sobic002G034750--Sobic004G349450 Sobic002G034750--Sobic003G212000 Sobic002G243300 Sobic002G243300 Sobic002G034750--Sobic002G243300 Sobic002G034750--Sobic003G234500 Sobic002G034750--Sobic008G071300 Sobic002G034750--Sobic006G120900 Sobic003G008000 Sobic003G008000 Sobic002G034750--Sobic003G008000 Sobic002G034750--Sobic001G504500 Sobic009G157800--Sobic005G144000 Sobic009G157800--Sobic008G071300 Sobic004G154100 Sobic004G154100 Sobic009G157800--Sobic004G154100 Sobic008G122800 Sobic008G122800 Sobic009G157800--Sobic008G122800 Sobic001G039100 Sobic001G039100 Sobic009G157800--Sobic001G039100 Sobic004G180100 Sobic004G180100 Sobic009G157800--Sobic004G180100 Sobic009G157800--Sobic001G503600 Sobic009G157800--Sobic003G212000 Sobic009G157800--Sobic002G170100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.