Gene annotation
Transcriptome id Sobic.002G124900.1
Synonym ATPQ, Sb02g010770
Functional annotation expressed protein
UniProt A0A1B6QAW3
Pfam PF05873
Panther DB PTHR12700 PTHR12700:SF12
NCBI CDD KOG3366; Mitochondrial F1F0-ATP synthase, subunit d/ATP7
KEGG Orthology K02138; ATPeF0D, ATP5H, F-type H+-transporting ATPase subunit d
Gene Ontology GO:0015986; ATP synthesis coupled proton transport GO:0015078proton transmembrane transporter activity GO:0000276mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)


Orthologs (automatic annotation)
TAIR AT3G52300 : ATP synthase D chain, mitochondrial
RAP-DB (Rice) LOC_Os08g37320.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium KQJ98678 , KQK16442
Barley HORVU2Hr1G072660.1 , HORVU2Hr1G072660.2 , HORVU2Hr1G072650.1
Wheat TraesCS2D02G291300 , TraesCS2A02G293700 , TraesCS2B02G310000
Populus -


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cDNA sequences
Sobic.002G124900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G352200 succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed K01899: succinyl-CoA synthetase alpha subunit
2 Sobic.004G261800 sugar-responsive gene(PubMedID : 25496467)@pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
3 Sobic.010G231700 expressed protein -
4 Sobic.002G420600 nucleoside-triphosphatase, putative, expressed -
5 Sobic.003G013700 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
6 Sobic.001G303900 CPuORF23 - conserved peptide uORF-containing transcript, expressed K01087: trehalose 6-phosphate phosphatase
7 Sobic.004G173700 SLL1 protein, putative, expressed -
8 Sobic.007G014700 Fructokinase-2 (Zm)(PubMedID : 27208977)@kinase, pfkB family, putative, expressed K00847: E2.7.1.4, fructokinase
9 Sobic.004G247500 "HD-zip transcription factor, ortholog of sihdz02 of foxtail millet (Setaria italica L.)"(PubMedID : 29862293)@caleosin related protein, putative, expressed K17991: peroxygenase
10 Sobic.001G135200 OB-fold nucleic acid binding domain containing protein, putative, expressed K15365: RecQ-mediated genome instability protein 2
11 Sobic.004G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@wound/stress protein, putative, expressed -
12 Sobic.010G250300 ANTH/ENTH domain containing protein, putative, expressed -
13 Sobic.009G176400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
14 Sobic.002G255400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K09569: FK506-binding protein 2
15 Sobic.007G212100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@AGC_PVPK_like_CDK8.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
16 Sobic.003G016300 SFT2, putative, expressed -
17 Sobic.002G186200 ASC1, putative, expressed K04710: CERS1_2_3_4, ceramide synthetase
18 Sobic.003G284100 expressed protein -
19 Sobic.003G335300 E2F-related protein, putative, expressed -
20 Sobic.003G137600 CHIT10 - Chitinase family protein precursor, expressed -


Gene co-expression network
sample Sobic002G124900 Sobic002G124900 Sobic002G352200 Sobic002G352200 Sobic002G124900--Sobic002G352200 Sobic004G261800 Sobic004G261800 Sobic002G124900--Sobic004G261800 Sobic010G231700 Sobic010G231700 Sobic002G124900--Sobic010G231700 Sobic002G420600 Sobic002G420600 Sobic002G124900--Sobic002G420600 Sobic003G013700 Sobic003G013700 Sobic002G124900--Sobic003G013700 Sobic001G303900 Sobic001G303900 Sobic002G124900--Sobic001G303900 Sobic004G173700 Sobic004G173700 Sobic002G124900--Sobic004G173700 Sobic007G014700 Sobic007G014700 Sobic002G124900--Sobic007G014700 Sobic004G247500 Sobic004G247500 Sobic002G124900--Sobic004G247500 Sobic002G352200--Sobic002G420600 Sobic003G016300 Sobic003G016300 Sobic002G352200--Sobic003G016300 Sobic008G018300 Sobic008G018300 Sobic002G352200--Sobic008G018300 Sobic002G255400 Sobic002G255400 Sobic002G352200--Sobic002G255400 Sobic002G352200--Sobic004G173700 Sobic003G260600 Sobic003G260600 Sobic002G352200--Sobic003G260600 Sobic009G224400 Sobic009G224400 Sobic002G352200--Sobic009G224400 Sobic002G352200--Sobic002G124900 Sobic001G073600 Sobic001G073600 Sobic002G352200--Sobic001G073600 Sobic004G261800--Sobic003G013700 Sobic002G186200 Sobic002G186200 Sobic004G261800--Sobic002G186200 Sobic004G261800--Sobic007G014700 Sobic010G253200 Sobic010G253200 Sobic004G261800--Sobic010G253200 Sobic002G420100 Sobic002G420100 Sobic004G261800--Sobic002G420100 Sobic002G201700 Sobic002G201700 Sobic004G261800--Sobic002G201700 Sobic004G261800--Sobic001G303900 Sobic003G423700 Sobic003G423700 Sobic004G261800--Sobic003G423700 Sobic008G156600 Sobic008G156600 Sobic004G261800--Sobic008G156600 Sobic010G231700--Sobic002G352200 Sobic010G231700--Sobic002G124900 Sobic009G215300 Sobic009G215300 Sobic010G231700--Sobic009G215300 Sobic003G049800 Sobic003G049800 Sobic010G231700--Sobic003G049800 Sobic002G246800 Sobic002G246800 Sobic010G231700--Sobic002G246800 Sobic003G335300 Sobic003G335300 Sobic010G231700--Sobic003G335300 Sobic002G186500 Sobic002G186500 Sobic010G231700--Sobic002G186500 Sobic007G013900 Sobic007G013900 Sobic010G231700--Sobic007G013900 Sobic010G231700--Sobic003G016300 Sobic003G089100 Sobic003G089100 Sobic002G420600--Sobic003G089100 Sobic002G420600--Sobic004G173700 Sobic006G120900 Sobic006G120900 Sobic002G420600--Sobic006G120900 Sobic003G201500 Sobic003G201500 Sobic002G420600--Sobic003G201500 Sobic002G420600--Sobic002G352200 Sobic002G420600--Sobic002G255400 Sobic002G420600--Sobic001G303900 Sobic002G420600--Sobic003G260600 Sobic003G372200 Sobic003G372200 Sobic002G420600--Sobic003G372200 Sobic003G013700--Sobic004G261800 Sobic005G050400 Sobic005G050400 Sobic003G013700--Sobic005G050400 Sobic001G072000 Sobic001G072000 Sobic003G013700--Sobic001G072000 Sobic003G013700--Sobic008G156600 Sobic003G013700--Sobic003G089100 Sobic009G163100 Sobic009G163100 Sobic003G013700--Sobic009G163100 Sobic001G322400 Sobic001G322400 Sobic003G013700--Sobic001G322400 Sobic002G172401 Sobic002G172401 Sobic003G013700--Sobic002G172401 Sobic001G112600 Sobic001G112600 Sobic003G013700--Sobic001G112600 Sobic001G303900--Sobic004G247500 Sobic009G189700 Sobic009G189700 Sobic001G303900--Sobic009G189700 Sobic001G303900--Sobic005G050400 Sobic004G120500 Sobic004G120500 Sobic001G303900--Sobic004G120500 Sobic001G303900--Sobic003G013700 Sobic005G144000 Sobic005G144000 Sobic001G303900--Sobic005G144000 Sobic001G303900--Sobic003G089100 Sobic001G342101 Sobic001G342101 Sobic001G303900--Sobic001G342101 Sobic001G303900--Sobic002G420600 Sobic003G137600 Sobic003G137600 Sobic004G173700--Sobic003G137600 Sobic004G173700--Sobic006G120900 Sobic004G173700--Sobic002G420600 Sobic001G387200 Sobic001G387200 Sobic004G173700--Sobic001G387200 Sobic001G365700 Sobic001G365700 Sobic004G173700--Sobic001G365700 Sobic003G129900 Sobic003G129900 Sobic004G173700--Sobic003G129900 Sobic007G212100 Sobic007G212100 Sobic004G173700--Sobic007G212100 Sobic004G173700--Sobic001G303900 Sobic004G173700--Sobic008G018300 Sobic007G014700--Sobic004G261800 Sobic007G014700--Sobic002G255400 Sobic007G014700--Sobic003G089100 Sobic007G014700--Sobic003G013700 Sobic007G014700--Sobic003G260600 Sobic007G014700--Sobic002G420600 Sobic003G284100 Sobic003G284100 Sobic007G014700--Sobic003G284100 Sobic007G014700--Sobic002G352200 Sobic007G014700--Sobic001G303900 Sobic004G247500--Sobic001G303900 Sobic009G157800 Sobic009G157800 Sobic004G247500--Sobic009G157800 Sobic004G247500--Sobic009G189700 Sobic006G070564 Sobic006G070564 Sobic004G247500--Sobic006G070564 Sobic003G340000 Sobic003G340000 Sobic004G247500--Sobic003G340000 Sobic008G050900 Sobic008G050900 Sobic004G247500--Sobic008G050900 Sobic004G247500--Sobic005G144000 Sobic005G074300 Sobic005G074300 Sobic004G247500--Sobic005G074300 Sobic009G176600 Sobic009G176600 Sobic004G247500--Sobic009G176600
Octagon: transcription factors


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