Gene annotation
Transcriptome id Sobic.004G064600.2,Sobic.004G064600.1
Synonym RAD23, Sb04g005370, RAD23B
Functional annotation RAD23 DNA repair protein, putative, expressed
UniProt C5XWB3 , A0A1Z5RL57
Pfam PF00240 PF09280 PF00627
Panther DB PTHR10621 PTHR10621:SF9
NCBI CDD KOG0011; Nucleotide excision repair factor NEF2, RAD23 component
KEGG Orthology K10839; RAD23, UV excision repair protein RAD23
Gene Ontology GO:0005515; protein binding GO:0006289nucleotide-excision repair GO:0003684damaged DNA binding


Orthologs (automatic annotation)
TAIR AT1G79650 : Rad23 UV excision repair protein family
RAP-DB (Rice) LOC_Os02g08300.2 : RAD23 DNA repair protein, putative, expressed
MaizeGDB (Corn) Zm00025a034734
Brachypodium KQJ93639 , PNT66022 , PNT66023
Barley HORVU6Hr1G029760.4 , HORVU6Hr1G029760.5 , HORVU6Hr1G029760.6 , HORVU6Hr1G029760.7 , HORVU6Hr1G029760.1 , HORVU6Hr1G029760.2 , HORVU6Hr1G029760.3 , HORVU6Hr1G029720.1
Wheat TraesCS6B02G177400 , TraesCS6B02G177400 , TraesCS6D02G138800 , TraesCS6D02G138800 , TraesCS6A02G149500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G095000 PPR repeat domain containing protein, putative, expressed -
2 Sobic.002G192900 expressed protein -
3 Sobic.008G047500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.001G323400 expressed protein -
5 Sobic.001G082800 ORC5 - Putative origin recognition complex subunit 5, expressed K02607: origin recognition complex subunit 5
6 Sobic.002G390800 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
7 Sobic.008G004900 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
8 Sobic.007G186400 resistance protein, putative, expressed -
9 Sobic.002G308000 powdery mildew resistant protein 5, putative, expressed -
10 Sobic.003G184300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.001G248400 expressed protein -
12 Sobic.007G111300 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
13 Sobic.010G188900 PPR repeat domain containing protein, putative, expressed -
14 Sobic.002G268700 hydroxymethylglutaryl-CoA synthase, putative, expressed K01641: hydroxymethylglutaryl-CoA synthase
15 Sobic.009G136000 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
16 Sobic.010G080900 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
17 Sobic.007G204000 methyl-binding domain protein MBD, putative, expressed -
18 Sobic.002G232400 clathrin adaptor complex small chain domain containing protein, expressed -
19 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
20 Sobic.003G159700 ATKINESIN-13A/KINESIN-13A, putative, expressed K10393: KIF2_24, kinesin family member 2/24


Gene co-expression network
sample Sobic004G064600 Sobic004G064600 Sobic006G095000 Sobic006G095000 Sobic004G064600--Sobic006G095000 Sobic002G192900 Sobic002G192900 Sobic004G064600--Sobic002G192900 Sobic008G047500 Sobic008G047500 Sobic004G064600--Sobic008G047500 Sobic001G323400 Sobic001G323400 Sobic004G064600--Sobic001G323400 Sobic001G082800 Sobic001G082800 Sobic004G064600--Sobic001G082800 Sobic002G390800 Sobic002G390800 Sobic004G064600--Sobic002G390800 Sobic008G004900 Sobic008G004900 Sobic004G064600--Sobic008G004900 Sobic007G186400 Sobic007G186400 Sobic004G064600--Sobic007G186400 Sobic002G308000 Sobic002G308000 Sobic004G064600--Sobic002G308000 Sobic003G184300 Sobic003G184300 Sobic006G095000--Sobic003G184300 Sobic006G095000--Sobic002G192900 Sobic006G095000--Sobic004G064600 Sobic006G095000--Sobic008G047500 Sobic004G215600 Sobic004G215600 Sobic006G095000--Sobic004G215600 Sobic006G095000--Sobic001G323400 Sobic006G095000--Sobic002G308000 Sobic003G045000 Sobic003G045000 Sobic006G095000--Sobic003G045000 Sobic009G120400 Sobic009G120400 Sobic006G095000--Sobic009G120400 Sobic002G192900--Sobic002G308000 Sobic010G188900 Sobic010G188900 Sobic002G192900--Sobic010G188900 Sobic002G192900--Sobic006G095000 Sobic001G361200 Sobic001G361200 Sobic002G192900--Sobic001G361200 Sobic002G192900--Sobic002G390800 Sobic002G192900--Sobic003G184300 Sobic002G192900--Sobic004G064600 Sobic002G192900--Sobic001G323400 Sobic001G248400 Sobic001G248400 Sobic002G192900--Sobic001G248400 Sobic008G085950 Sobic008G085950 Sobic008G047500--Sobic008G085950 Sobic003G204100 Sobic003G204100 Sobic008G047500--Sobic003G204100 Sobic003G194800 Sobic003G194800 Sobic008G047500--Sobic003G194800 Sobic007G102000 Sobic007G102000 Sobic008G047500--Sobic007G102000 Sobic008G047500--Sobic002G390800 Sobic002G173400 Sobic002G173400 Sobic008G047500--Sobic002G173400 Sobic004G298600 Sobic004G298600 Sobic008G047500--Sobic004G298600 Sobic007G105700 Sobic007G105700 Sobic008G047500--Sobic007G105700 Sobic010G009700 Sobic010G009700 Sobic008G047500--Sobic010G009700 Sobic001G126800 Sobic001G126800 Sobic001G323400--Sobic001G126800 Sobic003G159700 Sobic003G159700 Sobic001G323400--Sobic003G159700 Sobic001G323400--Sobic006G095000 Sobic001G323400--Sobic002G308000 Sobic001G323400--Sobic002G192900 Sobic001G323400--Sobic004G064600 Sobic010G269800 Sobic010G269800 Sobic001G323400--Sobic010G269800 Sobic001G323400--Sobic002G390800 Sobic001G011000 Sobic001G011000 Sobic001G323400--Sobic001G011000 Sobic009G136000 Sobic009G136000 Sobic001G082800--Sobic009G136000 Sobic001G082800--Sobic002G390800 Sobic009G125800 Sobic009G125800 Sobic001G082800--Sobic009G125800 Sobic001G082800--Sobic008G004900 Sobic002G297500 Sobic002G297500 Sobic001G082800--Sobic002G297500 Sobic009G131200 Sobic009G131200 Sobic001G082800--Sobic009G131200 Sobic002G113400 Sobic002G113400 Sobic001G082800--Sobic002G113400 Sobic004G053900 Sobic004G053900 Sobic001G082800--Sobic004G053900 Sobic009G058100 Sobic009G058100 Sobic001G082800--Sobic009G058100 Sobic002G390800--Sobic001G082800 Sobic002G390800--Sobic007G102000 Sobic002G390800--Sobic009G125800 Sobic002G390800--Sobic008G047500 Sobic002G390800--Sobic002G192900 Sobic002G390800--Sobic009G136000 Sobic002G390800--Sobic008G004900 Sobic002G390800--Sobic001G248400 Sobic010G038200 Sobic010G038200 Sobic002G390800--Sobic010G038200 Sobic008G004900--Sobic001G248400 Sobic008G004900--Sobic001G082800 Sobic008G004900--Sobic009G131200 Sobic008G004900--Sobic002G390800 Sobic008G004900--Sobic010G038200 Sobic008G004900--Sobic002G308000 Sobic002G271400 Sobic002G271400 Sobic008G004900--Sobic002G271400 Sobic008G004900--Sobic002G113400 Sobic008G004900--Sobic009G136000 Sobic007G186400--Sobic009G120400 Sobic007G186400--Sobic004G215600 Sobic007G186400--Sobic002G308000 Sobic004G000400 Sobic004G000400 Sobic007G186400--Sobic004G000400 Sobic007G186400--Sobic008G047500 Sobic007G186400--Sobic002G173400 Sobic006G106600 Sobic006G106600 Sobic007G186400--Sobic006G106600 Sobic002G426100 Sobic002G426100 Sobic007G186400--Sobic002G426100 Sobic007G186400--Sobic007G105700 Sobic002G392400 Sobic002G392400 Sobic002G308000--Sobic002G392400 Sobic002G308000--Sobic007G105700 Sobic001G117900 Sobic001G117900 Sobic002G308000--Sobic001G117900 Sobic001G433600 Sobic001G433600 Sobic002G308000--Sobic001G433600 Sobic003G293400 Sobic003G293400 Sobic002G308000--Sobic003G293400 Sobic010G253200 Sobic010G253200 Sobic002G308000--Sobic010G253200 Sobic001G131900 Sobic001G131900 Sobic002G308000--Sobic001G131900 Sobic007G111300 Sobic007G111300 Sobic002G308000--Sobic007G111300 Sobic002G308000--Sobic002G192900
Octagon: transcription factors


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