Gene annotation
Transcriptome id Sobic.007G204000.2,Sobic.007G204000.1
Synonym ATMBD2, MBD2, Sb07g027130, MBD02
Functional annotation methyl-binding domain protein MBD, putative, expressed
UniProt C5YIL2
Pfam PF07496 PF01429
Panther DB PTHR12396
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005634nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G35330 : methyl-CPG-binding domain protein 02
RAP-DB (Rice) LOC_Os09g32090.1 : methyl-binding domain protein MBD, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G394500 GPI transamidase component PIG-S-related, putative, expressed K05291: GPI-anchor transamidase subunit S
2 Sobic.007G118500 galactosyltransferase family protein, putative, expressed -
3 Sobic.001G203600 PPR repeat domain containing protein, putative, expressed -
4 Sobic.010G086300 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
5 Sobic.003G409900 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
6 Sobic.001G043200 expressed protein -
7 Sobic.006G191000 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
8 Sobic.006G220400 exonuclease, putative, expressed -
9 Sobic.001G385000 nucleoside-triphosphatase, putative, expressed K14641: apyrase
10 Sobic.001G356100 GPI-anchored wall transfer protein 1, putative, expressed K05283: glucosaminylphosphatidylinositol acyltransferase
11 Sobic.006G106300 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
12 Sobic.006G232800 expressed protein K17785: IMMT, FCJ1, mitofilin
13 Sobic.001G498800 UAA transporter family domain containing protein, expressed K15272: solute carrier family 35 (UDP-sugar transporter), member A1/2/3
14 Sobic.006G112500 CAF1 family ribonuclease containing protein, putative, expressed K01148: PARN, poly(A)-specific ribonuclease
15 Sobic.008G095900 ATP binding protein, putative, expressed K17592: sacsin
16 Sobic.004G064600 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
17 Sobic.001G378800 fumarate hydratase, mitochondrial precursor, putative, expressed K01679: E4.2.1.2B, fumC, fumarate hydratase, class II
18 Sobic.004G060300 DNA binding protein, putative, expressed -
19 Sobic.001G486900 exostosin family protein, putative, expressed -
20 Sobic.010G133400 pantothenate kinase 4, putative, expressed -


Gene co-expression network
sample Sobic007G204000 Sobic007G204000 Sobic003G394500 Sobic003G394500 Sobic007G204000--Sobic003G394500 Sobic007G118500 Sobic007G118500 Sobic007G204000--Sobic007G118500 Sobic001G203600 Sobic001G203600 Sobic007G204000--Sobic001G203600 Sobic010G086300 Sobic010G086300 Sobic007G204000--Sobic010G086300 Sobic003G409900 Sobic003G409900 Sobic007G204000--Sobic003G409900 Sobic001G043200 Sobic001G043200 Sobic007G204000--Sobic001G043200 Sobic006G191000 Sobic006G191000 Sobic007G204000--Sobic006G191000 Sobic006G220400 Sobic006G220400 Sobic007G204000--Sobic006G220400 Sobic001G385000 Sobic001G385000 Sobic007G204000--Sobic001G385000 Sobic003G117800 Sobic003G117800 Sobic003G394500--Sobic003G117800 Sobic003G394500--Sobic001G385000 Sobic004G350700 Sobic004G350700 Sobic003G394500--Sobic004G350700 Sobic001G378800 Sobic001G378800 Sobic003G394500--Sobic001G378800 Sobic003G394500--Sobic007G118500 Sobic003G190200 Sobic003G190200 Sobic003G394500--Sobic003G190200 Sobic006G232800 Sobic006G232800 Sobic003G394500--Sobic006G232800 Sobic007G030100 Sobic007G030100 Sobic003G394500--Sobic007G030100 Sobic001G424800 Sobic001G424800 Sobic003G394500--Sobic001G424800 Sobic007G118500--Sobic003G394500 Sobic004G060300 Sobic004G060300 Sobic007G118500--Sobic004G060300 Sobic002G070300 Sobic002G070300 Sobic007G118500--Sobic002G070300 Sobic010G133400 Sobic010G133400 Sobic007G118500--Sobic010G133400 Sobic007G118500--Sobic001G378800 Sobic007G118500--Sobic006G232800 Sobic001G455000 Sobic001G455000 Sobic007G118500--Sobic001G455000 Sobic001G356100 Sobic001G356100 Sobic007G118500--Sobic001G356100 Sobic008G171400 Sobic008G171400 Sobic007G118500--Sobic008G171400 Sobic001G203600--Sobic010G086300 Sobic001G117900 Sobic001G117900 Sobic001G203600--Sobic001G117900 Sobic001G203600--Sobic007G204000 Sobic001G052100 Sobic001G052100 Sobic001G203600--Sobic001G052100 Sobic008G072500 Sobic008G072500 Sobic001G203600--Sobic008G072500 Sobic007G226800 Sobic007G226800 Sobic001G203600--Sobic007G226800 Sobic002G182000 Sobic002G182000 Sobic001G203600--Sobic002G182000 Sobic001G203600--Sobic006G220400 Sobic009G063800 Sobic009G063800 Sobic001G203600--Sobic009G063800 Sobic010G086300--Sobic001G385000 Sobic010G086300--Sobic006G232800 Sobic010G086300--Sobic003G394500 Sobic001G149000 Sobic001G149000 Sobic010G086300--Sobic001G149000 Sobic008G022400 Sobic008G022400 Sobic010G086300--Sobic008G022400 Sobic009G025700 Sobic009G025700 Sobic010G086300--Sobic009G025700 Sobic002G362500 Sobic002G362500 Sobic010G086300--Sobic002G362500 Sobic010G086300--Sobic006G191000 Sobic009G046900 Sobic009G046900 Sobic010G086300--Sobic009G046900 Sobic006G106300 Sobic006G106300 Sobic003G409900--Sobic006G106300 Sobic001G389200 Sobic001G389200 Sobic003G409900--Sobic001G389200 Sobic006G060000 Sobic006G060000 Sobic003G409900--Sobic006G060000 Sobic009G122500 Sobic009G122500 Sobic003G409900--Sobic009G122500 Sobic003G021600 Sobic003G021600 Sobic003G409900--Sobic003G021600 Sobic010G223400 Sobic010G223400 Sobic003G409900--Sobic010G223400 Sobic004G254800 Sobic004G254800 Sobic003G409900--Sobic004G254800 Sobic001G015400 Sobic001G015400 Sobic003G409900--Sobic001G015400 Sobic009G128500 Sobic009G128500 Sobic003G409900--Sobic009G128500 Sobic005G123400 Sobic005G123400 Sobic001G043200--Sobic005G123400 Sobic001G043200--Sobic003G190200 Sobic001G043200--Sobic003G021600 Sobic001G043200--Sobic003G394500 Sobic001G043200--Sobic009G122500 Sobic001G043200--Sobic007G030100 Sobic004G122900 Sobic004G122900 Sobic001G043200--Sobic004G122900 Sobic009G154900 Sobic009G154900 Sobic001G043200--Sobic009G154900 Sobic003G194800 Sobic003G194800 Sobic001G043200--Sobic003G194800 Sobic006G191000--Sobic010G086300 Sobic006G191000--Sobic001G149000 Sobic006G191000--Sobic003G394500 Sobic008G152700 Sobic008G152700 Sobic006G191000--Sobic008G152700 Sobic004G194400 Sobic004G194400 Sobic006G191000--Sobic004G194400 Sobic006G191000--Sobic006G232800 Sobic006G191000--Sobic009G046900 Sobic010G274800 Sobic010G274800 Sobic006G191000--Sobic010G274800 Sobic002G304700 Sobic002G304700 Sobic006G191000--Sobic002G304700 Sobic006G220400--Sobic001G043200 Sobic006G220400--Sobic005G123400 Sobic009G227100 Sobic009G227100 Sobic006G220400--Sobic009G227100 Sobic006G012300 Sobic006G012300 Sobic006G220400--Sobic006G012300 Sobic006G220400--Sobic001G203600 Sobic006G103700 Sobic006G103700 Sobic006G220400--Sobic006G103700 Sobic006G220400--Sobic007G204000 Sobic004G194100 Sobic004G194100 Sobic006G220400--Sobic004G194100 Sobic004G334200 Sobic004G334200 Sobic006G220400--Sobic004G334200 Sobic001G385000--Sobic010G086300 Sobic001G385000--Sobic003G394500 Sobic001G385000--Sobic006G232800 Sobic001G385000--Sobic001G149000 Sobic001G385000--Sobic003G117800 Sobic001G356200 Sobic001G356200 Sobic001G385000--Sobic001G356200 Sobic001G385000--Sobic008G152700 Sobic001G385000--Sobic001G424800 Sobic001G308500 Sobic001G308500 Sobic001G385000--Sobic001G308500
Octagon: transcription factors


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