Gene annotation
Transcriptome id Sobic.007G150000.1
Synonym Sb07g022420, TBL16
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
expressed protein
UniProt C5YM43
Pfam PF14416 PF13839
Panther DB PTHR13533 PTHR13533:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G20680 : TRICHOME BIREFRINGENCE-LIKE 16
RAP-DB (Rice) LOC_Os11g13800.1 : expressed protein
MaizeGDB (Corn) Zm00025a030747
Brachypodium KQJ98553 , KQJ86390
Barley HORVU3Hr1G014720.1 , HORVU3Hr1G014720.2 , HORVU3Hr1G014720.5 , HORVU3Hr1G014720.7 , HORVU5Hr1G023960.7 , HORVU5Hr1G023960.4 , HORVU5Hr1G023960.3 , HORVU5Hr1G023960.2 , HORVU5Hr1G023960.1 , HORVU5Hr1G023960.9
Wheat TraesCS5D02G103500 , TraesCS5A02G091400 , TraesCS5B02G098100 , TraesCS3B02G097400 , TraesCS3B02G097400 , TraesCS3D02G082400 , TraesCS3D02G082400 , TraesCS3A02G082300 , TraesCS3A02G082300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G150000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G222600 expressed protein -
2 Sobic.003G340700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
3 Sobic.003G023500 syntaxin, putative, expressed K08489: syntaxin 16
4 Sobic.004G123000 expressed protein -
5 Sobic.010G238700 dynamin family protein, putative, expressed K12483: EH domain-containing protein 1
6 Sobic.004G159000 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
7 Sobic.001G013200 actin-related protein 2/3 complex subunit 4, putative, expressed K05755: actin related protein 2/3 complex, subunit 4
8 Sobic.003G217100 Yip1 domain containing protein, expressed -
9 Sobic.008G130400 prefoldin, putative, expressed -
10 Sobic.003G414600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thiamin pyrophosphokinase 1, putative, expressed K00949: thiN, TPK1, thiamine pyrophosphokinase
11 Sobic.001G230900 - K07910: Ras-related protein Rab-18
12 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
13 Sobic.002G399500 SNARE associated Golgi protein, putative, expressed -
14 Sobic.004G030000 mitochondrial ATP synthase precursor, putative, expressed -
15 Sobic.003G326800 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
16 Sobic.010G028200 GDP-mannose 4,6 dehydratase 2, putative, expressed K01711: gmd, GDPmannose 4,6-dehydratase
17 Sobic.003G152900 -(PubMedID : 26976818)@dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
18 Sobic.001G469100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ZOS7-06 - C2H2 zinc finger protein, expressed -
19 Sobic.003G311700 cyclase/dehydrase family protein, expressed K18588: coenzyme Q-binding protein COQ10
20 Sobic.009G054000 expressed protein -


Gene co-expression network
sample Sobic007G150000 Sobic007G150000 Sobic004G222600 Sobic004G222600 Sobic007G150000--Sobic004G222600 Sobic003G340700 Sobic003G340700 Sobic007G150000--Sobic003G340700 Sobic003G023500 Sobic003G023500 Sobic007G150000--Sobic003G023500 Sobic004G123000 Sobic004G123000 Sobic007G150000--Sobic004G123000 Sobic010G238700 Sobic010G238700 Sobic007G150000--Sobic010G238700 Sobic004G159000 Sobic004G159000 Sobic007G150000--Sobic004G159000 Sobic001G013200 Sobic001G013200 Sobic007G150000--Sobic001G013200 Sobic003G217100 Sobic003G217100 Sobic007G150000--Sobic003G217100 Sobic008G130400 Sobic008G130400 Sobic007G150000--Sobic008G130400 Sobic004G222600--Sobic007G150000 Sobic004G222600--Sobic003G023500 Sobic004G222600--Sobic003G217100 Sobic001G237500 Sobic001G237500 Sobic004G222600--Sobic001G237500 Sobic001G309500 Sobic001G309500 Sobic004G222600--Sobic001G309500 Sobic002G296300 Sobic002G296300 Sobic004G222600--Sobic002G296300 Sobic002G090700 Sobic002G090700 Sobic004G222600--Sobic002G090700 Sobic003G332401 Sobic003G332401 Sobic004G222600--Sobic003G332401 Sobic007G115100 Sobic007G115100 Sobic004G222600--Sobic007G115100 Sobic003G340700--Sobic004G159000 Sobic004G030000 Sobic004G030000 Sobic003G340700--Sobic004G030000 Sobic003G196600 Sobic003G196600 Sobic003G340700--Sobic003G196600 Sobic001G031900 Sobic001G031900 Sobic003G340700--Sobic001G031900 Sobic003G152900 Sobic003G152900 Sobic003G340700--Sobic003G152900 Sobic004G170400 Sobic004G170400 Sobic003G340700--Sobic004G170400 Sobic001G350600 Sobic001G350600 Sobic003G340700--Sobic001G350600 Sobic008G102600 Sobic008G102600 Sobic003G340700--Sobic008G102600 Sobic009G112900 Sobic009G112900 Sobic003G340700--Sobic009G112900 Sobic003G023500--Sobic004G222600 Sobic003G023500--Sobic003G217100 Sobic002G214900 Sobic002G214900 Sobic003G023500--Sobic002G214900 Sobic001G214200 Sobic001G214200 Sobic003G023500--Sobic001G214200 Sobic001G409900 Sobic001G409900 Sobic003G023500--Sobic001G409900 Sobic009G191600 Sobic009G191600 Sobic003G023500--Sobic009G191600 Sobic006G222400 Sobic006G222400 Sobic003G023500--Sobic006G222400 Sobic004G054300 Sobic004G054300 Sobic003G023500--Sobic004G054300 Sobic002G376500 Sobic002G376500 Sobic003G023500--Sobic002G376500 Sobic009G054000 Sobic009G054000 Sobic004G123000--Sobic009G054000 Sobic006G239300 Sobic006G239300 Sobic004G123000--Sobic006G239300 Sobic004G123000--Sobic001G350600 Sobic003G209000 Sobic003G209000 Sobic004G123000--Sobic003G209000 Sobic002G296200 Sobic002G296200 Sobic004G123000--Sobic002G296200 Sobic006G013000 Sobic006G013000 Sobic004G123000--Sobic006G013000 Sobic003G155400 Sobic003G155400 Sobic004G123000--Sobic003G155400 Sobic004G123000--Sobic004G159000 Sobic001G404800 Sobic001G404800 Sobic004G123000--Sobic001G404800 Sobic010G238700--Sobic006G222400 Sobic001G529000 Sobic001G529000 Sobic010G238700--Sobic001G529000 Sobic009G036900 Sobic009G036900 Sobic010G238700--Sobic009G036900 Sobic001G126200 Sobic001G126200 Sobic010G238700--Sobic001G126200 Sobic003G382900 Sobic003G382900 Sobic010G238700--Sobic003G382900 Sobic004G203100 Sobic004G203100 Sobic010G238700--Sobic004G203100 Sobic003G007500 Sobic003G007500 Sobic010G238700--Sobic003G007500 Sobic008G132800 Sobic008G132800 Sobic010G238700--Sobic008G132800 Sobic001G010700 Sobic001G010700 Sobic010G238700--Sobic001G010700 Sobic007G013900 Sobic007G013900 Sobic004G159000--Sobic007G013900 Sobic004G344800 Sobic004G344800 Sobic004G159000--Sobic004G344800 Sobic002G262200 Sobic002G262200 Sobic004G159000--Sobic002G262200 Sobic004G159000--Sobic004G030000 Sobic004G159000--Sobic003G196600 Sobic004G159000--Sobic002G090700 Sobic004G159000--Sobic003G152900 Sobic002G260200 Sobic002G260200 Sobic004G159000--Sobic002G260200 Sobic010G007400 Sobic010G007400 Sobic004G159000--Sobic010G007400 Sobic003G167000 Sobic003G167000 Sobic001G013200--Sobic003G167000 Sobic007G048700 Sobic007G048700 Sobic001G013200--Sobic007G048700 Sobic001G035400 Sobic001G035400 Sobic001G013200--Sobic001G035400 Sobic008G014300 Sobic008G014300 Sobic001G013200--Sobic008G014300 Sobic006G203900 Sobic006G203900 Sobic001G013200--Sobic006G203900 Sobic001G013200--Sobic009G112900 Sobic003G131300 Sobic003G131300 Sobic001G013200--Sobic003G131300 Sobic010G197900 Sobic010G197900 Sobic001G013200--Sobic010G197900 Sobic007G003100 Sobic007G003100 Sobic001G013200--Sobic007G003100 Sobic001G105100 Sobic001G105100 Sobic003G217100--Sobic001G105100 Sobic003G217100--Sobic002G090700 Sobic003G217100--Sobic008G132800 Sobic003G217100--Sobic006G222400 Sobic003G217100--Sobic001G309500 Sobic001G067900 Sobic001G067900 Sobic003G217100--Sobic001G067900 Sobic005G184200 Sobic005G184200 Sobic003G217100--Sobic005G184200 Sobic003G217100--Sobic001G237500 Sobic001G408100 Sobic001G408100 Sobic003G217100--Sobic001G408100 Sobic002G263800 Sobic002G263800 Sobic008G130400--Sobic002G263800 Sobic009G232000 Sobic009G232000 Sobic008G130400--Sobic009G232000 Sobic008G132700 Sobic008G132700 Sobic008G130400--Sobic008G132700 Sobic001G513500 Sobic001G513500 Sobic008G130400--Sobic001G513500 Sobic001G418900 Sobic001G418900 Sobic008G130400--Sobic001G418900 Sobic001G483100 Sobic001G483100 Sobic008G130400--Sobic001G483100 Sobic004G310300 Sobic004G310300 Sobic008G130400--Sobic004G310300 Sobic006G138100 Sobic006G138100 Sobic008G130400--Sobic006G138100 Sobic004G224900 Sobic004G224900 Sobic008G130400--Sobic004G224900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.