Gene annotation
Transcriptome id Sobic.003G414600.1
Synonym Sb03g044860, TPK1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
thiamin pyrophosphokinase 1, putative, expressed
UniProt C5XH23
Pfam PF04265 PF04263
Panther DB PTHR13622 PTHR13622:SF7
NCBI CDD KOG3153; Thiamine pyrophosphokinase
KEGG Orthology K00949; thiN, TPK1, thiamine pyrophosphokinase
Gene Ontology GO:0009229; thiamine diphosphate biosynthetic process GO:0005524ATP binding GO:0004788thiamine diphosphokinase activity


Orthologs (automatic annotation)
TAIR AT1G02880 : thiamin pyrophosphokinase1
RAP-DB (Rice) LOC_Os01g70580.1 : thiamin pyrophosphokinase 1, putative, expressed
MaizeGDB (Corn) Zm00025a026165
Brachypodium PNT73522
Barley -
Wheat TraesCS1B02G245400
Populus -


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cDNA sequences
Sobic.003G414600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G213600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@green ripe-like, putative, expressed -
2 Sobic.004G222600 expressed protein -
3 Sobic.007G150000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
4 Sobic.001G230900 - K07910: Ras-related protein Rab-18
5 Sobic.009G213700 - -
6 Sobic.007G092100 ADP-ribosylation factor, putative, expressed K07942: ADP-ribosylation factor-like protein 1
7 Sobic.010G238700 dynamin family protein, putative, expressed K12483: EH domain-containing protein 1
8 Sobic.003G217100 Yip1 domain containing protein, expressed -
9 Sobic.002G020900 GCRP5 - Glycine and cysteine rich family protein precursor, expressed -
10 Sobic.009G182200 domain of unknown function, DUF250 domain containing protein, expressed -
11 Sobic.001G418000 NAD dependent epimerase/dehydratase family domain containing protein, expressed K12450: UDP-glucose 4,6-dehydratase
12 Sobic.001G402600 expressed protein -
13 Sobic.001G112700 class I glutamine amidotransferase, putative, expressed K01658: anthranilate synthase component II
14 Sobic.001G237500 transporter family protein, putative, expressed -
15 Sobic.007G225300 2-nitropropane dioxygenase family, putative, expressed -
16 Sobic.002G272900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
17 Sobic.010G236500 LTPL85 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
18 Sobic.001G126200 acetyltransferase, GNAT family, putative, expressed K17972: NAA20, N-terminal acetyltransferase B complex catalytic subunit
19 Sobic.002G353000 5-formyltetrahydrofolate cyclo-ligase, putative, expressed K01934: 5-formyltetrahydrofolate cyclo-ligase
20 Sobic.008G132800 expressed protein -


Gene co-expression network
sample Sobic003G414600 Sobic003G414600 Sobic009G213600 Sobic009G213600 Sobic003G414600--Sobic009G213600 Sobic004G222600 Sobic004G222600 Sobic003G414600--Sobic004G222600 Sobic007G150000 Sobic007G150000 Sobic003G414600--Sobic007G150000 Sobic001G230900 Sobic001G230900 Sobic003G414600--Sobic001G230900 Sobic009G213700 Sobic009G213700 Sobic003G414600--Sobic009G213700 Sobic007G092100 Sobic007G092100 Sobic003G414600--Sobic007G092100 Sobic010G238700 Sobic010G238700 Sobic003G414600--Sobic010G238700 Sobic003G217100 Sobic003G217100 Sobic003G414600--Sobic003G217100 Sobic002G020900 Sobic002G020900 Sobic003G414600--Sobic002G020900 Sobic009G213600--Sobic009G213700 Sobic009G213600--Sobic003G414600 Sobic008G004100 Sobic008G004100 Sobic009G213600--Sobic008G004100 Sobic002G392800 Sobic002G392800 Sobic009G213600--Sobic002G392800 Sobic008G062900 Sobic008G062900 Sobic009G213600--Sobic008G062900 Sobic010G151200 Sobic010G151200 Sobic009G213600--Sobic010G151200 Sobic009G246100 Sobic009G246100 Sobic009G213600--Sobic009G246100 Sobic001G453900 Sobic001G453900 Sobic009G213600--Sobic001G453900 Sobic001G112700 Sobic001G112700 Sobic009G213600--Sobic001G112700 Sobic004G222600--Sobic007G150000 Sobic003G023500 Sobic003G023500 Sobic004G222600--Sobic003G023500 Sobic004G222600--Sobic003G217100 Sobic001G237500 Sobic001G237500 Sobic004G222600--Sobic001G237500 Sobic001G309500 Sobic001G309500 Sobic004G222600--Sobic001G309500 Sobic002G296300 Sobic002G296300 Sobic004G222600--Sobic002G296300 Sobic002G090700 Sobic002G090700 Sobic004G222600--Sobic002G090700 Sobic003G332401 Sobic003G332401 Sobic004G222600--Sobic003G332401 Sobic007G115100 Sobic007G115100 Sobic004G222600--Sobic007G115100 Sobic007G150000--Sobic004G222600 Sobic003G340700 Sobic003G340700 Sobic007G150000--Sobic003G340700 Sobic007G150000--Sobic003G023500 Sobic004G123000 Sobic004G123000 Sobic007G150000--Sobic004G123000 Sobic007G150000--Sobic010G238700 Sobic004G159000 Sobic004G159000 Sobic007G150000--Sobic004G159000 Sobic001G013200 Sobic001G013200 Sobic007G150000--Sobic001G013200 Sobic007G150000--Sobic003G217100 Sobic008G130400 Sobic008G130400 Sobic007G150000--Sobic008G130400 Sobic001G230900--Sobic010G238700 Sobic009G036900 Sobic009G036900 Sobic001G230900--Sobic009G036900 Sobic010G144400 Sobic010G144400 Sobic001G230900--Sobic010G144400 Sobic002G068300 Sobic002G068300 Sobic001G230900--Sobic002G068300 Sobic003G024800 Sobic003G024800 Sobic001G230900--Sobic003G024800 Sobic008G132800 Sobic008G132800 Sobic001G230900--Sobic008G132800 Sobic010G228600 Sobic010G228600 Sobic001G230900--Sobic010G228600 Sobic001G090000 Sobic001G090000 Sobic001G230900--Sobic001G090000 Sobic001G040300 Sobic001G040300 Sobic001G230900--Sobic001G040300 Sobic009G213700--Sobic009G213600 Sobic009G213700--Sobic003G414600 Sobic009G213700--Sobic001G230900 Sobic009G213700--Sobic001G090000 Sobic001G187000 Sobic001G187000 Sobic009G213700--Sobic001G187000 Sobic001G516500 Sobic001G516500 Sobic009G213700--Sobic001G516500 Sobic009G157900 Sobic009G157900 Sobic009G213700--Sobic009G157900 Sobic002G258100 Sobic002G258100 Sobic009G213700--Sobic002G258100 Sobic003G343900 Sobic003G343900 Sobic009G213700--Sobic003G343900 Sobic004G066800 Sobic004G066800 Sobic007G092100--Sobic004G066800 Sobic001G057300 Sobic001G057300 Sobic007G092100--Sobic001G057300 Sobic001G505500 Sobic001G505500 Sobic007G092100--Sobic001G505500 Sobic001G035400 Sobic001G035400 Sobic007G092100--Sobic001G035400 Sobic001G342200 Sobic001G342200 Sobic007G092100--Sobic001G342200 Sobic003G330500 Sobic003G330500 Sobic007G092100--Sobic003G330500 Sobic001G096100 Sobic001G096100 Sobic007G092100--Sobic001G096100 Sobic004G138800 Sobic004G138800 Sobic007G092100--Sobic004G138800 Sobic009G191200 Sobic009G191200 Sobic007G092100--Sobic009G191200 Sobic006G222400 Sobic006G222400 Sobic010G238700--Sobic006G222400 Sobic001G529000 Sobic001G529000 Sobic010G238700--Sobic001G529000 Sobic010G238700--Sobic009G036900 Sobic001G126200 Sobic001G126200 Sobic010G238700--Sobic001G126200 Sobic003G382900 Sobic003G382900 Sobic010G238700--Sobic003G382900 Sobic004G203100 Sobic004G203100 Sobic010G238700--Sobic004G203100 Sobic003G007500 Sobic003G007500 Sobic010G238700--Sobic003G007500 Sobic010G238700--Sobic008G132800 Sobic001G010700 Sobic001G010700 Sobic010G238700--Sobic001G010700 Sobic001G105100 Sobic001G105100 Sobic003G217100--Sobic001G105100 Sobic003G217100--Sobic002G090700 Sobic003G217100--Sobic008G132800 Sobic003G217100--Sobic006G222400 Sobic003G217100--Sobic001G309500 Sobic001G067900 Sobic001G067900 Sobic003G217100--Sobic001G067900 Sobic005G184200 Sobic005G184200 Sobic003G217100--Sobic005G184200 Sobic003G217100--Sobic001G237500 Sobic001G408100 Sobic001G408100 Sobic003G217100--Sobic001G408100 Sobic010G236500 Sobic010G236500 Sobic002G020900--Sobic010G236500 Sobic002G292600 Sobic002G292600 Sobic002G020900--Sobic002G292600 Sobic002G020900--Sobic003G414600 Sobic004G145200 Sobic004G145200 Sobic002G020900--Sobic004G145200 Sobic009G241700 Sobic009G241700 Sobic002G020900--Sobic009G241700 Sobic001G012800 Sobic001G012800 Sobic002G020900--Sobic001G012800 Sobic002G020900--Sobic009G213700 Sobic005G195600 Sobic005G195600 Sobic002G020900--Sobic005G195600 Sobic007G225300 Sobic007G225300 Sobic002G020900--Sobic007G225300
Octagon: transcription factors


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