Gene annotation
Transcriptome id Sobic.009G213600.1
Synonym RTE1, Sb09g026920
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
green ripe-like, putative, expressed
UniProt A0A1B6P9R6
Pfam PF05608
Panther DB PTHR20921
NCBI CDD KOG3150; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G26070 : Protein of unknown function (DUF778)
RAP-DB (Rice) LOC_Os05g46240.2 : green ripe-like, putative, expressed
MaizeGDB (Corn) Zm00025a044400
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.009G213600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G213700 - -
2 Sobic.003G414600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thiamin pyrophosphokinase 1, putative, expressed K00949: thiN, TPK1, thiamine pyrophosphokinase
3 Sobic.008G004100 phosphatidate cytidylyltransferase, putative, expressed K15892: farnesol kinase
4 Sobic.002G392800 thymidylate kinase, putative, expressed K00943: tmk, dTMP kinase
5 Sobic.008G062900 H-BTB8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
6 Sobic.010G151200 GRF zinc finger family protein, expressed -
7 Sobic.009G246100 X8 domain containing protein, expressed -
8 Sobic.001G453900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@SEC14 cytosolic factor family protein, putative, expressed -
9 Sobic.001G112700 class I glutamine amidotransferase, putative, expressed K01658: anthranilate synthase component II
10 Sobic.001G240500 flavoprotein wrbA, putative, expressed K03809: NAD(P)H dehydrogenase (quinone)
11 Sobic.010G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
12 Sobic.009G013900 ankyrin repeat domain-containing protein 28, putative, expressed -
13 Sobic.001G230900 - K07910: Ras-related protein Rab-18
14 Sobic.001G476300 homeobox associated leucine zipper, putative, expressed -
15 Sobic.001G108000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@maf, putative, expressed K06287: septum formation protein
16 Sobic.003G198500 XIK, putative, expressed K10357: myosin V
17 Sobic.004G126700 glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
18 Sobic.001G432300 imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed K01663: imidazole glycerol-phosphate synthase
19 Sobic.009G250100 extra-large G-protein-related, putative, expressed -
20 Sobic.004G134100 glycosyltransferase, putative, expressed -


Gene co-expression network
sample Sobic009G213600 Sobic009G213600 Sobic009G213700 Sobic009G213700 Sobic009G213600--Sobic009G213700 Sobic003G414600 Sobic003G414600 Sobic009G213600--Sobic003G414600 Sobic008G004100 Sobic008G004100 Sobic009G213600--Sobic008G004100 Sobic002G392800 Sobic002G392800 Sobic009G213600--Sobic002G392800 Sobic008G062900 Sobic008G062900 Sobic009G213600--Sobic008G062900 Sobic010G151200 Sobic010G151200 Sobic009G213600--Sobic010G151200 Sobic009G246100 Sobic009G246100 Sobic009G213600--Sobic009G246100 Sobic001G453900 Sobic001G453900 Sobic009G213600--Sobic001G453900 Sobic001G112700 Sobic001G112700 Sobic009G213600--Sobic001G112700 Sobic009G213700--Sobic009G213600 Sobic009G213700--Sobic003G414600 Sobic001G230900 Sobic001G230900 Sobic009G213700--Sobic001G230900 Sobic001G090000 Sobic001G090000 Sobic009G213700--Sobic001G090000 Sobic001G187000 Sobic001G187000 Sobic009G213700--Sobic001G187000 Sobic001G516500 Sobic001G516500 Sobic009G213700--Sobic001G516500 Sobic009G157900 Sobic009G157900 Sobic009G213700--Sobic009G157900 Sobic002G258100 Sobic002G258100 Sobic009G213700--Sobic002G258100 Sobic003G343900 Sobic003G343900 Sobic009G213700--Sobic003G343900 Sobic003G414600--Sobic009G213600 Sobic004G222600 Sobic004G222600 Sobic003G414600--Sobic004G222600 Sobic007G150000 Sobic007G150000 Sobic003G414600--Sobic007G150000 Sobic003G414600--Sobic001G230900 Sobic003G414600--Sobic009G213700 Sobic007G092100 Sobic007G092100 Sobic003G414600--Sobic007G092100 Sobic010G238700 Sobic010G238700 Sobic003G414600--Sobic010G238700 Sobic003G217100 Sobic003G217100 Sobic003G414600--Sobic003G217100 Sobic002G020900 Sobic002G020900 Sobic003G414600--Sobic002G020900 Sobic008G004100--Sobic002G392800 Sobic001G242800 Sobic001G242800 Sobic008G004100--Sobic001G242800 Sobic008G004100--Sobic009G213600 Sobic006G230300 Sobic006G230300 Sobic008G004100--Sobic006G230300 Sobic009G102300 Sobic009G102300 Sobic008G004100--Sobic009G102300 Sobic004G161900 Sobic004G161900 Sobic008G004100--Sobic004G161900 Sobic010G218300 Sobic010G218300 Sobic008G004100--Sobic010G218300 Sobic002G280700 Sobic002G280700 Sobic008G004100--Sobic002G280700 Sobic001G476300 Sobic001G476300 Sobic008G004100--Sobic001G476300 Sobic002G392800--Sobic001G242800 Sobic002G392800--Sobic001G112700 Sobic002G392800--Sobic008G004100 Sobic003G160900 Sobic003G160900 Sobic002G392800--Sobic003G160900 Sobic010G080500 Sobic010G080500 Sobic002G392800--Sobic010G080500 Sobic006G002700 Sobic006G002700 Sobic002G392800--Sobic006G002700 Sobic009G238900 Sobic009G238900 Sobic002G392800--Sobic009G238900 Sobic009G117000 Sobic009G117000 Sobic002G392800--Sobic009G117000 Sobic008G132700 Sobic008G132700 Sobic002G392800--Sobic008G132700 Sobic005G022500 Sobic005G022500 Sobic008G062900--Sobic005G022500 Sobic001G348800 Sobic001G348800 Sobic008G062900--Sobic001G348800 Sobic001G002800 Sobic001G002800 Sobic008G062900--Sobic001G002800 Sobic006G183900 Sobic006G183900 Sobic008G062900--Sobic006G183900 Sobic001G503000 Sobic001G503000 Sobic008G062900--Sobic001G503000 Sobic006G028400 Sobic006G028400 Sobic008G062900--Sobic006G028400 Sobic005G115300 Sobic005G115300 Sobic008G062900--Sobic005G115300 Sobic007G090472 Sobic007G090472 Sobic008G062900--Sobic007G090472 Sobic003G287200 Sobic003G287200 Sobic008G062900--Sobic003G287200 Sobic003G015300 Sobic003G015300 Sobic010G151200--Sobic003G015300 Sobic007G165400 Sobic007G165400 Sobic010G151200--Sobic007G165400 Sobic004G126700 Sobic004G126700 Sobic010G151200--Sobic004G126700 Sobic005G043000 Sobic005G043000 Sobic010G151200--Sobic005G043000 Sobic010G110800 Sobic010G110800 Sobic010G151200--Sobic010G110800 Sobic001G108000 Sobic001G108000 Sobic010G151200--Sobic001G108000 Sobic007G170300 Sobic007G170300 Sobic010G151200--Sobic007G170300 Sobic002G185800 Sobic002G185800 Sobic010G151200--Sobic002G185800 Sobic005G046700 Sobic005G046700 Sobic010G151200--Sobic005G046700 Sobic001G163800 Sobic001G163800 Sobic009G246100--Sobic001G163800 Sobic010G045400 Sobic010G045400 Sobic009G246100--Sobic010G045400 Sobic005G177400 Sobic005G177400 Sobic009G246100--Sobic005G177400 Sobic009G246100--Sobic005G022500 Sobic003G368000 Sobic003G368000 Sobic009G246100--Sobic003G368000 Sobic003G017601 Sobic003G017601 Sobic009G246100--Sobic003G017601 Sobic009G246100--Sobic001G503000 Sobic005G131301 Sobic005G131301 Sobic009G246100--Sobic005G131301 Sobic005G018200 Sobic005G018200 Sobic009G246100--Sobic005G018200 Sobic003G121500 Sobic003G121500 Sobic001G453900--Sobic003G121500 Sobic002G001700 Sobic002G001700 Sobic001G453900--Sobic002G001700 Sobic001G453900--Sobic007G165400 Sobic001G453900--Sobic004G126700 Sobic007G176100 Sobic007G176100 Sobic001G453900--Sobic007G176100 Sobic007G176000 Sobic007G176000 Sobic001G453900--Sobic007G176000 Sobic001G453900--Sobic010G110800 Sobic010G067400 Sobic010G067400 Sobic001G453900--Sobic010G067400 Sobic008G055100 Sobic008G055100 Sobic001G453900--Sobic008G055100 Sobic001G112700--Sobic002G392800 Sobic001G112700--Sobic001G242800 Sobic002G353000 Sobic002G353000 Sobic001G112700--Sobic002G353000 Sobic001G112700--Sobic006G002700 Sobic001G096100 Sobic001G096100 Sobic001G112700--Sobic001G096100 Sobic002G309400 Sobic002G309400 Sobic001G112700--Sobic002G309400 Sobic003G290000 Sobic003G290000 Sobic001G112700--Sobic003G290000 Sobic009G126500 Sobic009G126500 Sobic001G112700--Sobic009G126500 Sobic010G060600 Sobic010G060600 Sobic001G112700--Sobic010G060600
Octagon: transcription factors


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