Gene annotation
Transcriptome id Sobic.002G353000.1
Synonym 5-FCL, Sb02g037480
Functional annotation 5-formyltetrahydrofolate cyclo-ligase, putative, expressed
UniProt C5XCF3
Pfam PF01812
Panther DB PTHR23407 PTHR23407:SF1
NCBI CDD KOG3093; 5-formyltetrahydrofolate cyclo-ligase
KEGG Orthology K01934; 5-formyltetrahydrofolate cyclo-ligase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G13050 : 5-formyltetrahydrofolate cycloligase
RAP-DB (Rice) LOC_Os07g39070.1 : 5-formyltetrahydrofolate cyclo-ligase, putative, expressed
MaizeGDB (Corn) Zm00025a014996
Brachypodium KQK15542 , KQK15540 , KQK15541 , PNT74878
Barley HORVU2Hr1G036840.1
Wheat TraesCS2A02G187700
Populus -


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cDNA sequences
Sobic.002G353000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G301400 expressed protein -
2 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
3 Sobic.007G220900 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
4 Sobic.004G138800 prefoldin subunit, putative, expressed K09548: prefoldin subunit 1
5 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
6 Sobic.008G132400 expressed protein -
7 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
8 Sobic.008G132700 ATP-grasp domain containing protein, expressed K01648: ATP citrate (pro-S)-lyase
9 Sobic.010G042800 peptidase, T1 family, putative, expressed K02737: 20S proteasome subunit beta 5
10 Sobic.009G045800 bifunctional protein folD, putative, expressed -
11 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
12 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
13 Sobic.004G224800 ubiquitin-conjugating enzyme, putative, expressed K10689: peroxin-4
14 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
15 Sobic.007G030700 transporter, putative, expressed -
16 Sobic.009G104100 peptidase, M24 family protein, putative, expressed -
17 Sobic.008G130400 prefoldin, putative, expressed -
18 Sobic.003G410500 transaldolase, putative, expressed K00616: E2.2.1.2, talA, transaldolase
19 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
20 Sobic.009G232000 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e


Gene co-expression network
sample Sobic002G353000 Sobic002G353000 Sobic002G301400 Sobic002G301400 Sobic002G353000--Sobic002G301400 Sobic001G481700 Sobic001G481700 Sobic002G353000--Sobic001G481700 Sobic007G220900 Sobic007G220900 Sobic002G353000--Sobic007G220900 Sobic004G138800 Sobic004G138800 Sobic002G353000--Sobic004G138800 Sobic004G224900 Sobic004G224900 Sobic002G353000--Sobic004G224900 Sobic008G132400 Sobic008G132400 Sobic002G353000--Sobic008G132400 Sobic002G406500 Sobic002G406500 Sobic002G353000--Sobic002G406500 Sobic008G132700 Sobic008G132700 Sobic002G353000--Sobic008G132700 Sobic010G042800 Sobic010G042800 Sobic002G353000--Sobic010G042800 Sobic002G301400--Sobic002G353000 Sobic003G124800 Sobic003G124800 Sobic002G301400--Sobic003G124800 Sobic001G529000 Sobic001G529000 Sobic002G301400--Sobic001G529000 Sobic006G232200 Sobic006G232200 Sobic002G301400--Sobic006G232200 Sobic009G232400 Sobic009G232400 Sobic002G301400--Sobic009G232400 Sobic006G262900 Sobic006G262900 Sobic002G301400--Sobic006G262900 Sobic001G402300 Sobic001G402300 Sobic002G301400--Sobic001G402300 Sobic004G224800 Sobic004G224800 Sobic002G301400--Sobic004G224800 Sobic010G039800 Sobic010G039800 Sobic002G301400--Sobic010G039800 Sobic001G025600 Sobic001G025600 Sobic001G481700--Sobic001G025600 Sobic001G481700--Sobic004G224900 Sobic010G100000 Sobic010G100000 Sobic001G481700--Sobic010G100000 Sobic002G341800 Sobic002G341800 Sobic001G481700--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic001G481700--Sobic001G404100 Sobic001G481700--Sobic007G220900 Sobic009G104100 Sobic009G104100 Sobic001G481700--Sobic009G104100 Sobic001G458700 Sobic001G458700 Sobic001G481700--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G481700--Sobic007G176200 Sobic007G220900--Sobic001G481700 Sobic002G101000 Sobic002G101000 Sobic007G220900--Sobic002G101000 Sobic007G220900--Sobic010G100000 Sobic001G513500 Sobic001G513500 Sobic007G220900--Sobic001G513500 Sobic007G220900--Sobic009G104100 Sobic009G179100 Sobic009G179100 Sobic007G220900--Sobic009G179100 Sobic008G094600 Sobic008G094600 Sobic007G220900--Sobic008G094600 Sobic007G220900--Sobic001G025600 Sobic001G030300 Sobic001G030300 Sobic007G220900--Sobic001G030300 Sobic001G418900 Sobic001G418900 Sobic004G138800--Sobic001G418900 Sobic004G138800--Sobic004G224900 Sobic007G076300 Sobic007G076300 Sobic004G138800--Sobic007G076300 Sobic001G505500 Sobic001G505500 Sobic004G138800--Sobic001G505500 Sobic009G119900 Sobic009G119900 Sobic004G138800--Sobic009G119900 Sobic001G096100 Sobic001G096100 Sobic004G138800--Sobic001G096100 Sobic003G330500 Sobic003G330500 Sobic004G138800--Sobic003G330500 Sobic001G007600 Sobic001G007600 Sobic004G138800--Sobic001G007600 Sobic006G252200 Sobic006G252200 Sobic004G138800--Sobic006G252200 Sobic004G224900--Sobic003G330500 Sobic004G224900--Sobic006G252200 Sobic004G224900--Sobic007G176200 Sobic004G224900--Sobic004G138800 Sobic004G224900--Sobic007G076300 Sobic004G224900--Sobic001G481700 Sobic001G502200 Sobic001G502200 Sobic004G224900--Sobic001G502200 Sobic004G224900--Sobic001G458700 Sobic001G236300 Sobic001G236300 Sobic004G224900--Sobic001G236300 Sobic008G132400--Sobic004G138800 Sobic006G216600 Sobic006G216600 Sobic008G132400--Sobic006G216600 Sobic004G216800 Sobic004G216800 Sobic008G132400--Sobic004G216800 Sobic006G035900 Sobic006G035900 Sobic008G132400--Sobic006G035900 Sobic003G363800 Sobic003G363800 Sobic008G132400--Sobic003G363800 Sobic001G040100 Sobic001G040100 Sobic008G132400--Sobic001G040100 Sobic001G057300 Sobic001G057300 Sobic008G132400--Sobic001G057300 Sobic001G085400 Sobic001G085400 Sobic008G132400--Sobic001G085400 Sobic001G304400 Sobic001G304400 Sobic008G132400--Sobic001G304400 Sobic002G406500--Sobic001G085400 Sobic001G377800 Sobic001G377800 Sobic002G406500--Sobic001G377800 Sobic001G436200 Sobic001G436200 Sobic002G406500--Sobic001G436200 Sobic002G056200 Sobic002G056200 Sobic002G406500--Sobic002G056200 Sobic006G138100 Sobic006G138100 Sobic002G406500--Sobic006G138100 Sobic002G115000 Sobic002G115000 Sobic002G406500--Sobic002G115000 Sobic002G049300 Sobic002G049300 Sobic002G406500--Sobic002G049300 Sobic002G047600 Sobic002G047600 Sobic002G406500--Sobic002G047600 Sobic002G304900 Sobic002G304900 Sobic002G406500--Sobic002G304900 Sobic008G132700--Sobic006G216600 Sobic008G132700--Sobic002G406500 Sobic001G483100 Sobic001G483100 Sobic008G132700--Sobic001G483100 Sobic008G132700--Sobic001G085400 Sobic008G132700--Sobic001G418900 Sobic008G132700--Sobic006G138100 Sobic008G132700--Sobic002G049300 Sobic008G132700--Sobic001G377800 Sobic006G137100 Sobic006G137100 Sobic008G132700--Sobic006G137100 Sobic004G310900 Sobic004G310900 Sobic010G042800--Sobic004G310900 Sobic002G263800 Sobic002G263800 Sobic010G042800--Sobic002G263800 Sobic005G157200 Sobic005G157200 Sobic010G042800--Sobic005G157200 Sobic010G042800--Sobic002G406500 Sobic004G066800 Sobic004G066800 Sobic010G042800--Sobic004G066800 Sobic004G032000 Sobic004G032000 Sobic010G042800--Sobic004G032000 Sobic001G331900 Sobic001G331900 Sobic010G042800--Sobic001G331900 Sobic003G129800 Sobic003G129800 Sobic010G042800--Sobic003G129800 Sobic001G128400 Sobic001G128400 Sobic010G042800--Sobic001G128400
Octagon: transcription factors


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