Gene annotation
Transcriptome id Sobic.009G104100.1
Synonym ATG2, ATEBP1, EBP1, Sb09g016610
Functional annotation peptidase, M24 family protein, putative, expressed
UniProt C5YWC5
Pfam PF00557
Panther DB PTHR10804 PTHR10804:SF11
NCBI CDD KOG2776; Metallopeptidase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G51800 : metallopeptidase M24 family protein
RAP-DB (Rice) LOC_Os05g28280.1 : peptidase, M24 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a043445 , Zm00025a037660
Brachypodium KQK06782
Barley HORVU1Hr1G059960.2 , HORVU1Hr1G059960.3 , HORVU1Hr1G059960.1 , HORVU1Hr1G059960.6 , HORVU1Hr1G059960.4 , HORVU1Hr1G059960.5
Wheat TraesCS1A02G224000 , TraesCS1A02G224000 , TraesCS1B02G237300 , TraesCS1D02G225600 , TraesCS1D02G225600
Populus -


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cDNA sequences
Sobic.009G104100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G101000 mitochondrial prohibitin complex protein 2, putative, expressed K17081: prohibitin 2
2 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
3 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
4 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
5 Sobic.007G220900 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
6 Sobic.003G330500 peptidase, T1 family, putative, expressed -
7 Sobic.008G132400 expressed protein -
8 Sobic.001G057300 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
9 Sobic.007G076300 26S proteasome non-ATPase regulatory subunit 8, putative, expressed K03031: PSMD8, 26S proteasome regulatory subunit N12
10 Sobic.010G008800 defender against cell death 1, putative, expressed K12668: OST2, oligosaccharyltransferase complex subunit epsilon
11 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
12 Sobic.009G179100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
13 Sobic.002G180300 isochorismate synthase 1, chloroplast precursor, putative, expressed K15040: voltage-dependent anion channel protein 2
14 Sobic.007G029400 60S acidic ribosomal protein P0, putative, expressed K02941: RP-LP0, large subunit ribosomal protein LP0
15 Sobic.009G115700 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
16 Sobic.005G027300 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
17 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
18 Sobic.004G138800 prefoldin subunit, putative, expressed K09548: prefoldin subunit 1
19 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
20 Sobic.001G030300 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17778: mitochondrial import inner membrane translocase subunit TIM10


Gene co-expression network
sample Sobic009G104100 Sobic009G104100 Sobic002G101000 Sobic002G101000 Sobic009G104100--Sobic002G101000 Sobic001G481700 Sobic001G481700 Sobic009G104100--Sobic001G481700 Sobic004G224900 Sobic004G224900 Sobic009G104100--Sobic004G224900 Sobic005G050500 Sobic005G050500 Sobic009G104100--Sobic005G050500 Sobic007G220900 Sobic007G220900 Sobic009G104100--Sobic007G220900 Sobic003G330500 Sobic003G330500 Sobic009G104100--Sobic003G330500 Sobic008G132400 Sobic008G132400 Sobic009G104100--Sobic008G132400 Sobic001G057300 Sobic001G057300 Sobic009G104100--Sobic001G057300 Sobic007G076300 Sobic007G076300 Sobic009G104100--Sobic007G076300 Sobic002G101000--Sobic009G104100 Sobic002G101000--Sobic007G220900 Sobic007G029400 Sobic007G029400 Sobic002G101000--Sobic007G029400 Sobic009G179100 Sobic009G179100 Sobic002G101000--Sobic009G179100 Sobic002G101000--Sobic005G050500 Sobic009G101700 Sobic009G101700 Sobic002G101000--Sobic009G101700 Sobic002G054000 Sobic002G054000 Sobic002G101000--Sobic002G054000 Sobic004G342400 Sobic004G342400 Sobic002G101000--Sobic004G342400 Sobic004G349700 Sobic004G349700 Sobic002G101000--Sobic004G349700 Sobic001G025600 Sobic001G025600 Sobic001G481700--Sobic001G025600 Sobic001G481700--Sobic004G224900 Sobic010G100000 Sobic010G100000 Sobic001G481700--Sobic010G100000 Sobic002G341800 Sobic002G341800 Sobic001G481700--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic001G481700--Sobic001G404100 Sobic001G481700--Sobic007G220900 Sobic001G481700--Sobic009G104100 Sobic001G458700 Sobic001G458700 Sobic001G481700--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G481700--Sobic007G176200 Sobic004G224900--Sobic003G330500 Sobic006G252200 Sobic006G252200 Sobic004G224900--Sobic006G252200 Sobic004G224900--Sobic007G176200 Sobic004G138800 Sobic004G138800 Sobic004G224900--Sobic004G138800 Sobic004G224900--Sobic007G076300 Sobic004G224900--Sobic001G481700 Sobic001G502200 Sobic001G502200 Sobic004G224900--Sobic001G502200 Sobic004G224900--Sobic001G458700 Sobic001G236300 Sobic001G236300 Sobic004G224900--Sobic001G236300 Sobic002G304900 Sobic002G304900 Sobic005G050500--Sobic002G304900 Sobic010G069400 Sobic010G069400 Sobic005G050500--Sobic010G069400 Sobic009G233400 Sobic009G233400 Sobic005G050500--Sobic009G233400 Sobic002G056200 Sobic002G056200 Sobic005G050500--Sobic002G056200 Sobic001G039400 Sobic001G039400 Sobic005G050500--Sobic001G039400 Sobic003G387900 Sobic003G387900 Sobic005G050500--Sobic003G387900 Sobic001G334300 Sobic001G334300 Sobic005G050500--Sobic001G334300 Sobic005G050500--Sobic009G179100 Sobic005G050500--Sobic007G029400 Sobic007G220900--Sobic001G481700 Sobic007G220900--Sobic002G101000 Sobic007G220900--Sobic010G100000 Sobic001G513500 Sobic001G513500 Sobic007G220900--Sobic001G513500 Sobic007G220900--Sobic009G104100 Sobic007G220900--Sobic009G179100 Sobic008G094600 Sobic008G094600 Sobic007G220900--Sobic008G094600 Sobic007G220900--Sobic001G025600 Sobic001G030300 Sobic001G030300 Sobic007G220900--Sobic001G030300 Sobic003G330500--Sobic004G224900 Sobic003G330500--Sobic007G176200 Sobic003G330500--Sobic007G076300 Sobic003G330500--Sobic006G252200 Sobic003G330500--Sobic001G458700 Sobic001G010700 Sobic001G010700 Sobic003G330500--Sobic001G010700 Sobic003G330500--Sobic001G502200 Sobic003G330500--Sobic004G138800 Sobic001G096100 Sobic001G096100 Sobic003G330500--Sobic001G096100 Sobic008G132400--Sobic004G138800 Sobic006G216600 Sobic006G216600 Sobic008G132400--Sobic006G216600 Sobic004G216800 Sobic004G216800 Sobic008G132400--Sobic004G216800 Sobic006G035900 Sobic006G035900 Sobic008G132400--Sobic006G035900 Sobic003G363800 Sobic003G363800 Sobic008G132400--Sobic003G363800 Sobic001G040100 Sobic001G040100 Sobic008G132400--Sobic001G040100 Sobic008G132400--Sobic001G057300 Sobic001G085400 Sobic001G085400 Sobic008G132400--Sobic001G085400 Sobic001G304400 Sobic001G304400 Sobic008G132400--Sobic001G304400 Sobic001G057300--Sobic006G216600 Sobic001G057300--Sobic002G304900 Sobic008G135000 Sobic008G135000 Sobic001G057300--Sobic008G135000 Sobic001G058900 Sobic001G058900 Sobic001G057300--Sobic001G058900 Sobic001G057300--Sobic001G334300 Sobic001G057300--Sobic001G085400 Sobic001G057300--Sobic006G035900 Sobic002G115000 Sobic002G115000 Sobic001G057300--Sobic002G115000 Sobic001G057300--Sobic003G387900 Sobic007G076300--Sobic004G224900 Sobic007G076300--Sobic004G138800 Sobic002G257400 Sobic002G257400 Sobic007G076300--Sobic002G257400 Sobic007G076300--Sobic003G330500 Sobic001G505500 Sobic001G505500 Sobic007G076300--Sobic001G505500 Sobic003G129800 Sobic003G129800 Sobic007G076300--Sobic003G129800 Sobic004G310300 Sobic004G310300 Sobic007G076300--Sobic004G310300 Sobic007G076300--Sobic005G050500 Sobic010G154700 Sobic010G154700 Sobic007G076300--Sobic010G154700
Octagon: transcription factors


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