Gene annotation
Transcriptome id Sobic.007G220900.2,Sobic.007G220900.1
Synonym Sb07g028700
Functional annotation ribosomal L9, putative, expressed
UniProt C5YJC3 , A0A1Z5RBN3
Pfam PF03948 PF01281
Panther DB PTHR21368 PTHR21368:SF21
NCBI CDD KOG4607; Mitochondrial ribosomal protein L9
KEGG Orthology K02939; RP-L9, MRPL9, large subunit ribosomal protein L9
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G53070 : Ribosomal protein L9/RNase H1
RAP-DB (Rice) LOC_Os05g45270.1 : ribosomal L9, putative, expressed
MaizeGDB (Corn) Zm00025a033776
Brachypodium KQK20067
Barley -
Wheat TraesCS7D02G011300 , TraesCS7A02G014100 , TraesCS4A02G482100
Populus -


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cDNA sequences
Sobic.007G220900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
2 Sobic.002G101000 mitochondrial prohibitin complex protein 2, putative, expressed K17081: prohibitin 2
3 Sobic.010G100000 S4 domain containing protein, putative, expressed K14560: U3 small nucleolar ribonucleoprotein protein IMP3
4 Sobic.001G513500 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
5 Sobic.009G104100 peptidase, M24 family protein, putative, expressed -
6 Sobic.009G179100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
7 Sobic.008G094600 - -
8 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
9 Sobic.001G030300 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17778: mitochondrial import inner membrane translocase subunit TIM10
10 Sobic.009G212400 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
11 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
12 Sobic.009G101700 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
13 Sobic.007G029400 60S acidic ribosomal protein P0, putative, expressed K02941: RP-LP0, large subunit ribosomal protein LP0
14 Sobic.004G310900 emp24/gp25L/p24 family protein, putative, expressed -
15 Sobic.005G091700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
16 Sobic.001G018200 prohibitin-2, putative, expressed K17081: prohibitin 2
17 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
18 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
19 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
20 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2


Gene co-expression network
sample Sobic007G220900 Sobic007G220900 Sobic001G481700 Sobic001G481700 Sobic007G220900--Sobic001G481700 Sobic002G101000 Sobic002G101000 Sobic007G220900--Sobic002G101000 Sobic010G100000 Sobic010G100000 Sobic007G220900--Sobic010G100000 Sobic001G513500 Sobic001G513500 Sobic007G220900--Sobic001G513500 Sobic009G104100 Sobic009G104100 Sobic007G220900--Sobic009G104100 Sobic009G179100 Sobic009G179100 Sobic007G220900--Sobic009G179100 Sobic008G094600 Sobic008G094600 Sobic007G220900--Sobic008G094600 Sobic001G025600 Sobic001G025600 Sobic007G220900--Sobic001G025600 Sobic001G030300 Sobic001G030300 Sobic007G220900--Sobic001G030300 Sobic001G481700--Sobic001G025600 Sobic004G224900 Sobic004G224900 Sobic001G481700--Sobic004G224900 Sobic001G481700--Sobic010G100000 Sobic002G341800 Sobic002G341800 Sobic001G481700--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic001G481700--Sobic001G404100 Sobic001G481700--Sobic007G220900 Sobic001G481700--Sobic009G104100 Sobic001G458700 Sobic001G458700 Sobic001G481700--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G481700--Sobic007G176200 Sobic002G101000--Sobic009G104100 Sobic002G101000--Sobic007G220900 Sobic007G029400 Sobic007G029400 Sobic002G101000--Sobic007G029400 Sobic002G101000--Sobic009G179100 Sobic005G050500 Sobic005G050500 Sobic002G101000--Sobic005G050500 Sobic009G101700 Sobic009G101700 Sobic002G101000--Sobic009G101700 Sobic002G054000 Sobic002G054000 Sobic002G101000--Sobic002G054000 Sobic004G342400 Sobic004G342400 Sobic002G101000--Sobic004G342400 Sobic004G349700 Sobic004G349700 Sobic002G101000--Sobic004G349700 Sobic010G100000--Sobic001G513500 Sobic001G011200 Sobic001G011200 Sobic010G100000--Sobic001G011200 Sobic010G100000--Sobic005G050500 Sobic001G436200 Sobic001G436200 Sobic010G100000--Sobic001G436200 Sobic003G280700 Sobic003G280700 Sobic010G100000--Sobic003G280700 Sobic010G100000--Sobic001G481700 Sobic005G091700 Sobic005G091700 Sobic010G100000--Sobic005G091700 Sobic001G018800 Sobic001G018800 Sobic010G100000--Sobic001G018800 Sobic002G406500 Sobic002G406500 Sobic010G100000--Sobic002G406500 Sobic001G513500--Sobic001G011200 Sobic002G056200 Sobic002G056200 Sobic001G513500--Sobic002G056200 Sobic003G129800 Sobic003G129800 Sobic001G513500--Sobic003G129800 Sobic001G513500--Sobic005G050500 Sobic001G334300 Sobic001G334300 Sobic001G513500--Sobic001G334300 Sobic001G513500--Sobic009G179100 Sobic004G310300 Sobic004G310300 Sobic001G513500--Sobic004G310300 Sobic001G513500--Sobic005G091700 Sobic001G513500--Sobic010G100000 Sobic009G104100--Sobic002G101000 Sobic009G104100--Sobic001G481700 Sobic009G104100--Sobic004G224900 Sobic009G104100--Sobic005G050500 Sobic009G104100--Sobic007G220900 Sobic003G330500 Sobic003G330500 Sobic009G104100--Sobic003G330500 Sobic008G132400 Sobic008G132400 Sobic009G104100--Sobic008G132400 Sobic001G057300 Sobic001G057300 Sobic009G104100--Sobic001G057300 Sobic007G076300 Sobic007G076300 Sobic009G104100--Sobic007G076300 Sobic002G304900 Sobic002G304900 Sobic009G179100--Sobic002G304900 Sobic009G179100--Sobic009G101700 Sobic009G179100--Sobic004G342400 Sobic009G179100--Sobic001G334300 Sobic009G179100--Sobic005G050500 Sobic009G233400 Sobic009G233400 Sobic009G179100--Sobic009G233400 Sobic003G387900 Sobic003G387900 Sobic009G179100--Sobic003G387900 Sobic001G039400 Sobic001G039400 Sobic009G179100--Sobic001G039400 Sobic009G173500 Sobic009G173500 Sobic009G179100--Sobic009G173500 Sobic008G098800 Sobic008G098800 Sobic008G094600--Sobic008G098800 Sobic002G135200 Sobic002G135200 Sobic008G094600--Sobic002G135200 Sobic001G058900 Sobic001G058900 Sobic008G094600--Sobic001G058900 Sobic008G094600--Sobic003G129800 Sobic009G223300 Sobic009G223300 Sobic008G094600--Sobic009G223300 Sobic001G517600 Sobic001G517600 Sobic008G094600--Sobic001G517600 Sobic008G100000 Sobic008G100000 Sobic008G094600--Sobic008G100000 Sobic008G094600--Sobic001G513500 Sobic001G286300 Sobic001G286300 Sobic008G094600--Sobic001G286300 Sobic004G103700 Sobic004G103700 Sobic001G025600--Sobic004G103700 Sobic001G172000 Sobic001G172000 Sobic001G025600--Sobic001G172000 Sobic001G025600--Sobic001G481700 Sobic001G025600--Sobic003G129800 Sobic001G025600--Sobic001G513500 Sobic003G442400 Sobic003G442400 Sobic001G025600--Sobic003G442400 Sobic001G025600--Sobic004G224900 Sobic001G025600--Sobic001G018800 Sobic003G287300 Sobic003G287300 Sobic001G025600--Sobic003G287300 Sobic001G030300--Sobic002G135200 Sobic001G030300--Sobic009G179100 Sobic006G261900 Sobic006G261900 Sobic001G030300--Sobic006G261900 Sobic001G030300--Sobic001G513500 Sobic010G023900 Sobic010G023900 Sobic001G030300--Sobic010G023900 Sobic001G030300--Sobic009G101700 Sobic009G119900 Sobic009G119900 Sobic001G030300--Sobic009G119900 Sobic002G356400 Sobic002G356400 Sobic001G030300--Sobic002G356400 Sobic002G296200 Sobic002G296200 Sobic001G030300--Sobic002G296200
Octagon: transcription factors


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