Gene annotation
Transcriptome id Sobic.003G311700.1
Synonym Sb03g035980
Functional annotation cyclase/dehydrase family protein, expressed
UniProt C5XLK1
Pfam PF03364
Panther DB PTHR12901 PTHR12901:SF10
NCBI CDD KOG3177; Oligoketide cyclase/lipid transport protein
KEGG Orthology K18588; coenzyme Q-binding protein COQ10
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G17650 : Polyketide cyclase / dehydrase and lipid transport protein
RAP-DB (Rice) LOC_Os01g56560.1 : cyclase/dehydrase family protein, expressed
MaizeGDB (Corn) Zm00025a039914 , Zm00025a027376
Brachypodium KQK09980
Barley HORVU3Hr1G075500.1 , HORVU3Hr1G075510.2 , HORVU3Hr1G075470.1 , HORVU3Hr1G075510.1
Wheat TraesCS3A02G295000 , TraesCS3B02G342400 , TraesCS3A02G295000 , TraesCS3D02G308100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G332401 - K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
2 Sobic.001G206000 acyltransferase, putative, expressed K00655: 1-acyl-sn-glycerol-3-phosphate acyltransferase
3 Sobic.004G222600 expressed protein -
4 Sobic.001G309500 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
5 Sobic.002G368400 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17795: mitochondrial import inner membrane translocase subunit TIM17
6 Sobic.003G116600 syntaxin, putative, expressed K08488: syntaxin 7
7 Sobic.004G339300 ABC transporter, ATP-binding protein, putative, expressed K12608: CCR4-NOT complex subunit CAF16
8 Sobic.001G367000 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
9 Sobic.010G204300 expressed protein -
10 Sobic.001G513300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein-methionine-S-oxide reductase, putative, expressed -
11 Sobic.004G159000 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
12 Sobic.006G202500 immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
13 Sobic.009G065000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA15 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
14 Sobic.001G064800 expp1 protein precursor, putative, expressed -
15 Sobic.007G026100 Divergent PAP2 family domain containing protein, expressed K09775: uncharacterized protein
16 Sobic.001G281700 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
17 Sobic.003G396000 copine, putative, expressed K16280: E3 ubiquitin-protein ligase RGLG
18 Sobic.001G441600 potyvirus VPg interacting protein, putative, expressed -
19 Sobic.007G150000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
20 Sobic.002G355100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@STE_PAK_Ste20_Slob_Wnk.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase


Gene co-expression network
sample Sobic003G311700 Sobic003G311700 Sobic003G332401 Sobic003G332401 Sobic003G311700--Sobic003G332401 Sobic001G206000 Sobic001G206000 Sobic003G311700--Sobic001G206000 Sobic004G222600 Sobic004G222600 Sobic003G311700--Sobic004G222600 Sobic001G309500 Sobic001G309500 Sobic003G311700--Sobic001G309500 Sobic002G368400 Sobic002G368400 Sobic003G311700--Sobic002G368400 Sobic003G116600 Sobic003G116600 Sobic003G311700--Sobic003G116600 Sobic004G339300 Sobic004G339300 Sobic003G311700--Sobic004G339300 Sobic001G367000 Sobic001G367000 Sobic003G311700--Sobic001G367000 Sobic010G204300 Sobic010G204300 Sobic003G311700--Sobic010G204300 Sobic002G296300 Sobic002G296300 Sobic003G332401--Sobic002G296300 Sobic003G115800 Sobic003G115800 Sobic003G332401--Sobic003G115800 Sobic003G332401--Sobic003G311700 Sobic009G246950 Sobic009G246950 Sobic003G332401--Sobic009G246950 Sobic007G186300 Sobic007G186300 Sobic003G332401--Sobic007G186300 Sobic002G090700 Sobic002G090700 Sobic003G332401--Sobic002G090700 Sobic003G007500 Sobic003G007500 Sobic003G332401--Sobic003G007500 Sobic001G054200 Sobic001G054200 Sobic003G332401--Sobic001G054200 Sobic003G332401--Sobic002G368400 Sobic003G116700 Sobic003G116700 Sobic001G206000--Sobic003G116700 Sobic001G149700 Sobic001G149700 Sobic001G206000--Sobic001G149700 Sobic009G065000 Sobic009G065000 Sobic001G206000--Sobic009G065000 Sobic010G055500 Sobic010G055500 Sobic001G206000--Sobic010G055500 Sobic001G281700 Sobic001G281700 Sobic001G206000--Sobic001G281700 Sobic004G231400 Sobic004G231400 Sobic001G206000--Sobic004G231400 Sobic003G317200 Sobic003G317200 Sobic001G206000--Sobic003G317200 Sobic010G071200 Sobic010G071200 Sobic001G206000--Sobic010G071200 Sobic007G079700 Sobic007G079700 Sobic001G206000--Sobic007G079700 Sobic007G150000 Sobic007G150000 Sobic004G222600--Sobic007G150000 Sobic003G023500 Sobic003G023500 Sobic004G222600--Sobic003G023500 Sobic003G217100 Sobic003G217100 Sobic004G222600--Sobic003G217100 Sobic001G237500 Sobic001G237500 Sobic004G222600--Sobic001G237500 Sobic004G222600--Sobic001G309500 Sobic004G222600--Sobic002G296300 Sobic004G222600--Sobic002G090700 Sobic004G222600--Sobic003G332401 Sobic007G115100 Sobic007G115100 Sobic004G222600--Sobic007G115100 Sobic004G196300 Sobic004G196300 Sobic001G309500--Sobic004G196300 Sobic010G153100 Sobic010G153100 Sobic001G309500--Sobic010G153100 Sobic002G078400 Sobic002G078400 Sobic001G309500--Sobic002G078400 Sobic001G309500--Sobic003G217100 Sobic001G526100 Sobic001G526100 Sobic001G309500--Sobic001G526100 Sobic001G309500--Sobic002G090700 Sobic008G132800 Sobic008G132800 Sobic001G309500--Sobic008G132800 Sobic004G066800 Sobic004G066800 Sobic001G309500--Sobic004G066800 Sobic003G155400 Sobic003G155400 Sobic001G309500--Sobic003G155400 Sobic002G368400--Sobic003G332401 Sobic002G368400--Sobic003G116600 Sobic009G199700 Sobic009G199700 Sobic002G368400--Sobic009G199700 Sobic009G059700 Sobic009G059700 Sobic002G368400--Sobic009G059700 Sobic002G368400--Sobic001G367000 Sobic002G368400--Sobic001G526100 Sobic001G283500 Sobic001G283500 Sobic002G368400--Sobic001G283500 Sobic007G195701 Sobic007G195701 Sobic002G368400--Sobic007G195701 Sobic002G368400--Sobic001G309500 Sobic003G116600--Sobic002G090700 Sobic010G007400 Sobic010G007400 Sobic003G116600--Sobic010G007400 Sobic005G184200 Sobic005G184200 Sobic003G116600--Sobic005G184200 Sobic004G159000 Sobic004G159000 Sobic003G116600--Sobic004G159000 Sobic003G116600--Sobic004G339300 Sobic003G116600--Sobic001G367000 Sobic004G202100 Sobic004G202100 Sobic003G116600--Sobic004G202100 Sobic003G116600--Sobic001G309500 Sobic002G401700 Sobic002G401700 Sobic003G116600--Sobic002G401700 Sobic003G141700 Sobic003G141700 Sobic004G339300--Sobic003G141700 Sobic001G224400 Sobic001G224400 Sobic004G339300--Sobic001G224400 Sobic004G339300--Sobic003G116600 Sobic001G074700 Sobic001G074700 Sobic004G339300--Sobic001G074700 Sobic003G152900 Sobic003G152900 Sobic004G339300--Sobic003G152900 Sobic001G077000 Sobic001G077000 Sobic004G339300--Sobic001G077000 Sobic002G194100 Sobic002G194100 Sobic004G339300--Sobic002G194100 Sobic002G202300 Sobic002G202300 Sobic004G339300--Sobic002G202300 Sobic004G170400 Sobic004G170400 Sobic004G339300--Sobic004G170400 Sobic001G529000 Sobic001G529000 Sobic001G367000--Sobic001G529000 Sobic004G224800 Sobic004G224800 Sobic001G367000--Sobic004G224800 Sobic006G222400 Sobic006G222400 Sobic001G367000--Sobic006G222400 Sobic001G367000--Sobic002G090700 Sobic003G362400 Sobic003G362400 Sobic001G367000--Sobic003G362400 Sobic001G367000--Sobic001G054200 Sobic001G126200 Sobic001G126200 Sobic001G367000--Sobic001G126200 Sobic003G124800 Sobic003G124800 Sobic001G367000--Sobic003G124800 Sobic010G065400 Sobic010G065400 Sobic001G367000--Sobic010G065400 Sobic008G161000 Sobic008G161000 Sobic010G204300--Sobic008G161000 Sobic010G204300--Sobic003G115800 Sobic007G059900 Sobic007G059900 Sobic010G204300--Sobic007G059900 Sobic001G147200 Sobic001G147200 Sobic010G204300--Sobic001G147200 Sobic010G204300--Sobic002G296300 Sobic010G204300--Sobic002G202300 Sobic003G181500 Sobic003G181500 Sobic010G204300--Sobic003G181500 Sobic006G062800 Sobic006G062800 Sobic010G204300--Sobic006G062800 Sobic010G246000 Sobic010G246000 Sobic010G204300--Sobic010G246000
Octagon: transcription factors


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