Gene annotation
Transcriptome id Sobic.004G339300.1
Synonym Sb04g036680
Functional annotation ABC transporter, ATP-binding protein, putative, expressed
UniProt C5XV77
Pfam PF00005
Panther DB PTHR12847 PTHR12847:SF6
NCBI CDD KOG2355; Predicted ABC-type transport, ATPase component/CCR4 associated factor
KEGG Orthology K12608; CCR4-NOT complex subunit CAF16
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT1G03905 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os02g56550.1 : ABC transporter, ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a032839
Brachypodium KQK01277
Barley HORVU6Hr1G088850.6 , HORVU6Hr1G088850.5 , HORVU6Hr1G088850.4 , HORVU6Hr1G088850.3 , HORVU6Hr1G088850.2 , HORVU6Hr1G088850.1
Wheat TraesCS6B02G415600 , TraesCS6A02G377900 , TraesCS6D02G362400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G141700 50S ribosomal protein L15, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
2 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
3 Sobic.003G116600 syntaxin, putative, expressed K08488: syntaxin 7
4 Sobic.001G074700 cytochrome c oxidase-related, putative, expressed K02266: cytochrome c oxidase subunit 6a
5 Sobic.003G152900 -(PubMedID : 26976818)@dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
6 Sobic.001G077000 similar to Cold acclimation protein COR413-PM1(PubMedID : 29862293)@cold acclimation protein WCOR413, putative, expressed -
7 Sobic.002G194100 annexin, putative, expressed K17095: annexin A7/11
8 Sobic.002G202300 vesicle transport v-SNARE protein, putative, expressed K08495: GOSR1, golgi SNAP receptor complex member 1
9 Sobic.004G170400 ubiquinol-cytochrome C reductase hinge protein, putative, expressed K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6
10 Sobic.010G153100 prefoldin, putative, expressed K14009: BCAP31, B-cell receptor-associated protein 31
11 Sobic.010G154700 - -
12 Sobic.004G030000 mitochondrial ATP synthase precursor, putative, expressed -
13 Sobic.001G040800 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
14 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
15 Sobic.010G225300 ubiquitin family protein, putative, expressed K08770: ubiquitin C
16 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
17 Sobic.010G018400 expressed protein K02153: ATPeV0E, V-type H+-transporting ATPase subunit e
18 Sobic.004G196300 ras-related protein, putative, expressed K07877: Ras-related protein Rab-2A
19 Sobic.004G159000 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
20 Sobic.003G273900 mitochondrial carrier protein, putative, expressed -


Gene co-expression network
sample Sobic004G339300 Sobic004G339300 Sobic003G141700 Sobic003G141700 Sobic004G339300--Sobic003G141700 Sobic001G224400 Sobic001G224400 Sobic004G339300--Sobic001G224400 Sobic003G116600 Sobic003G116600 Sobic004G339300--Sobic003G116600 Sobic001G074700 Sobic001G074700 Sobic004G339300--Sobic001G074700 Sobic003G152900 Sobic003G152900 Sobic004G339300--Sobic003G152900 Sobic001G077000 Sobic001G077000 Sobic004G339300--Sobic001G077000 Sobic002G194100 Sobic002G194100 Sobic004G339300--Sobic002G194100 Sobic002G202300 Sobic002G202300 Sobic004G339300--Sobic002G202300 Sobic004G170400 Sobic004G170400 Sobic004G339300--Sobic004G170400 Sobic003G141700--Sobic001G224400 Sobic001G350600 Sobic001G350600 Sobic003G141700--Sobic001G350600 Sobic003G141700--Sobic004G170400 Sobic003G141700--Sobic004G339300 Sobic003G141700--Sobic001G074700 Sobic009G119900 Sobic009G119900 Sobic003G141700--Sobic009G119900 Sobic003G185500 Sobic003G185500 Sobic003G141700--Sobic003G185500 Sobic001G342200 Sobic001G342200 Sobic003G141700--Sobic001G342200 Sobic007G114200 Sobic007G114200 Sobic003G141700--Sobic007G114200 Sobic003G368500 Sobic003G368500 Sobic001G224400--Sobic003G368500 Sobic003G155400 Sobic003G155400 Sobic001G224400--Sobic003G155400 Sobic002G153500 Sobic002G153500 Sobic001G224400--Sobic002G153500 Sobic010G154700 Sobic010G154700 Sobic001G224400--Sobic010G154700 Sobic010G213400 Sobic010G213400 Sobic001G224400--Sobic010G213400 Sobic008G189300 Sobic008G189300 Sobic001G224400--Sobic008G189300 Sobic010G153100 Sobic010G153100 Sobic001G224400--Sobic010G153100 Sobic001G132100 Sobic001G132100 Sobic001G224400--Sobic001G132100 Sobic002G222900 Sobic002G222900 Sobic001G224400--Sobic002G222900 Sobic002G090700 Sobic002G090700 Sobic003G116600--Sobic002G090700 Sobic010G007400 Sobic010G007400 Sobic003G116600--Sobic010G007400 Sobic005G184200 Sobic005G184200 Sobic003G116600--Sobic005G184200 Sobic004G159000 Sobic004G159000 Sobic003G116600--Sobic004G159000 Sobic003G116600--Sobic004G339300 Sobic001G367000 Sobic001G367000 Sobic003G116600--Sobic001G367000 Sobic004G202100 Sobic004G202100 Sobic003G116600--Sobic004G202100 Sobic001G309500 Sobic001G309500 Sobic003G116600--Sobic001G309500 Sobic002G401700 Sobic002G401700 Sobic003G116600--Sobic002G401700 Sobic001G074700--Sobic004G170400 Sobic001G074700--Sobic001G350600 Sobic004G259200 Sobic004G259200 Sobic001G074700--Sobic004G259200 Sobic002G309700 Sobic002G309700 Sobic001G074700--Sobic002G309700 Sobic001G074700--Sobic010G154700 Sobic002G296200 Sobic002G296200 Sobic001G074700--Sobic002G296200 Sobic001G074700--Sobic009G119900 Sobic001G047800 Sobic001G047800 Sobic001G074700--Sobic001G047800 Sobic002G418400 Sobic002G418400 Sobic001G074700--Sobic002G418400 Sobic004G030000 Sobic004G030000 Sobic003G152900--Sobic004G030000 Sobic003G152900--Sobic001G074700 Sobic003G152900--Sobic004G170400 Sobic003G152900--Sobic001G350600 Sobic003G152900--Sobic010G154700 Sobic001G031900 Sobic001G031900 Sobic003G152900--Sobic001G031900 Sobic003G152900--Sobic002G090700 Sobic003G152900--Sobic004G159000 Sobic004G066800 Sobic004G066800 Sobic003G152900--Sobic004G066800 Sobic003G072300 Sobic003G072300 Sobic001G077000--Sobic003G072300 Sobic001G077000--Sobic002G418400 Sobic001G077000--Sobic003G155400 Sobic003G209000 Sobic003G209000 Sobic001G077000--Sobic003G209000 Sobic001G077000--Sobic002G296200 Sobic006G083500 Sobic006G083500 Sobic001G077000--Sobic006G083500 Sobic003G215700 Sobic003G215700 Sobic001G077000--Sobic003G215700 Sobic004G060500 Sobic004G060500 Sobic001G077000--Sobic004G060500 Sobic003G296800 Sobic003G296800 Sobic001G077000--Sobic003G296800 Sobic001G040800 Sobic001G040800 Sobic002G194100--Sobic001G040800 Sobic002G194100--Sobic002G202300 Sobic006G232200 Sobic006G232200 Sobic002G194100--Sobic006G232200 Sobic004G293700 Sobic004G293700 Sobic002G194100--Sobic004G293700 Sobic001G459200 Sobic001G459200 Sobic002G194100--Sobic001G459200 Sobic001G054200 Sobic001G054200 Sobic002G194100--Sobic001G054200 Sobic004G248800 Sobic004G248800 Sobic002G194100--Sobic004G248800 Sobic003G253000 Sobic003G253000 Sobic002G194100--Sobic003G253000 Sobic004G079100 Sobic004G079100 Sobic002G194100--Sobic004G079100 Sobic002G202300--Sobic003G253000 Sobic003G220600 Sobic003G220600 Sobic002G202300--Sobic003G220600 Sobic006G141500 Sobic006G141500 Sobic002G202300--Sobic006G141500 Sobic006G264300 Sobic006G264300 Sobic002G202300--Sobic006G264300 Sobic002G046100 Sobic002G046100 Sobic002G202300--Sobic002G046100 Sobic003G115800 Sobic003G115800 Sobic002G202300--Sobic003G115800 Sobic010G204300 Sobic010G204300 Sobic002G202300--Sobic010G204300 Sobic006G062800 Sobic006G062800 Sobic002G202300--Sobic006G062800 Sobic006G182100 Sobic006G182100 Sobic002G202300--Sobic006G182100 Sobic004G170400--Sobic001G350600 Sobic004G170400--Sobic004G259200 Sobic004G170400--Sobic001G074700 Sobic001G465800 Sobic001G465800 Sobic004G170400--Sobic001G465800 Sobic004G170400--Sobic009G119900 Sobic002G356400 Sobic002G356400 Sobic004G170400--Sobic002G356400 Sobic004G170400--Sobic003G209000 Sobic004G310300 Sobic004G310300 Sobic004G170400--Sobic004G310300 Sobic004G170400--Sobic002G418400
Octagon: transcription factors


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