Gene annotation
Transcriptome id Sobic.003G141700.1
Synonym Sb03g012270
Functional annotation 50S ribosomal protein L15, putative, expressed
UniProt C5XI34
Pfam PF00828
Panther DB PTHR12934 PTHR12934:SF12
NCBI CDD KOG0846; Mitochondrial/chloroplast ribosomal protein L15/L10
KEGG Orthology K02876; RP-L15, MRPL15, large subunit ribosomal protein L15
Gene Ontology GO:0015934; large ribosomal subunit GO:0006412translation GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G64670 : Ribosomal protein L18e/L15 superfamily protein
RAP-DB (Rice) LOC_Os08g21840.1 : 50S ribosomal protein L15, putative, expressed
MaizeGDB (Corn) Zm00025a024256
Brachypodium KQJ96021
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G141700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
2 Sobic.001G350600 cytochrome c oxidase subunit, putative, expressed K02267: cytochrome c oxidase subunit 6b
3 Sobic.004G170400 ubiquinol-cytochrome C reductase hinge protein, putative, expressed K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6
4 Sobic.004G339300 ABC transporter, ATP-binding protein, putative, expressed K12608: CCR4-NOT complex subunit CAF16
5 Sobic.001G074700 cytochrome c oxidase-related, putative, expressed K02266: cytochrome c oxidase subunit 6a
6 Sobic.009G119900 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
7 Sobic.003G185500 expressed protein -
8 Sobic.001G342200 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
9 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
10 Sobic.002G214900 polygalacturonase, putative, expressed -
11 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
12 Sobic.004G202100 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
13 Sobic.006G010600 peptidyl-prolyl cis-trans isomerase, putative, expressed K09578: peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
14 Sobic.002G222900 transmembrane protein 50A, putative, expressed -
15 Sobic.007G091000 thioredoxin domain-containing protein 9, putative, expressed -
16 Sobic.007G134000 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
17 Sobic.004G159000 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
18 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
19 Sobic.007G019100 mitochondrial ribosomal protein S10, putative, expressed K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
20 Sobic.004G286100 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6


Gene co-expression network
sample Sobic003G141700 Sobic003G141700 Sobic001G224400 Sobic001G224400 Sobic003G141700--Sobic001G224400 Sobic001G350600 Sobic001G350600 Sobic003G141700--Sobic001G350600 Sobic004G170400 Sobic004G170400 Sobic003G141700--Sobic004G170400 Sobic004G339300 Sobic004G339300 Sobic003G141700--Sobic004G339300 Sobic001G074700 Sobic001G074700 Sobic003G141700--Sobic001G074700 Sobic009G119900 Sobic009G119900 Sobic003G141700--Sobic009G119900 Sobic003G185500 Sobic003G185500 Sobic003G141700--Sobic003G185500 Sobic001G342200 Sobic001G342200 Sobic003G141700--Sobic001G342200 Sobic007G114200 Sobic007G114200 Sobic003G141700--Sobic007G114200 Sobic003G368500 Sobic003G368500 Sobic001G224400--Sobic003G368500 Sobic003G155400 Sobic003G155400 Sobic001G224400--Sobic003G155400 Sobic002G153500 Sobic002G153500 Sobic001G224400--Sobic002G153500 Sobic010G154700 Sobic010G154700 Sobic001G224400--Sobic010G154700 Sobic010G213400 Sobic010G213400 Sobic001G224400--Sobic010G213400 Sobic008G189300 Sobic008G189300 Sobic001G224400--Sobic008G189300 Sobic010G153100 Sobic010G153100 Sobic001G224400--Sobic010G153100 Sobic001G132100 Sobic001G132100 Sobic001G224400--Sobic001G132100 Sobic002G222900 Sobic002G222900 Sobic001G224400--Sobic002G222900 Sobic001G350600--Sobic004G170400 Sobic004G259200 Sobic004G259200 Sobic001G350600--Sobic004G259200 Sobic002G356400 Sobic002G356400 Sobic001G350600--Sobic002G356400 Sobic001G350600--Sobic001G074700 Sobic001G465800 Sobic001G465800 Sobic001G350600--Sobic001G465800 Sobic003G209000 Sobic003G209000 Sobic001G350600--Sobic003G209000 Sobic001G404800 Sobic001G404800 Sobic001G350600--Sobic001G404800 Sobic001G350600--Sobic009G119900 Sobic004G030000 Sobic004G030000 Sobic001G350600--Sobic004G030000 Sobic004G170400--Sobic001G350600 Sobic004G170400--Sobic004G259200 Sobic004G170400--Sobic001G074700 Sobic004G170400--Sobic001G465800 Sobic004G170400--Sobic009G119900 Sobic004G170400--Sobic002G356400 Sobic004G170400--Sobic003G209000 Sobic004G310300 Sobic004G310300 Sobic004G170400--Sobic004G310300 Sobic002G418400 Sobic002G418400 Sobic004G170400--Sobic002G418400 Sobic004G339300--Sobic003G141700 Sobic004G339300--Sobic001G224400 Sobic003G116600 Sobic003G116600 Sobic004G339300--Sobic003G116600 Sobic004G339300--Sobic001G074700 Sobic003G152900 Sobic003G152900 Sobic004G339300--Sobic003G152900 Sobic001G077000 Sobic001G077000 Sobic004G339300--Sobic001G077000 Sobic002G194100 Sobic002G194100 Sobic004G339300--Sobic002G194100 Sobic002G202300 Sobic002G202300 Sobic004G339300--Sobic002G202300 Sobic004G339300--Sobic004G170400 Sobic001G074700--Sobic004G170400 Sobic001G074700--Sobic001G350600 Sobic001G074700--Sobic004G259200 Sobic002G309700 Sobic002G309700 Sobic001G074700--Sobic002G309700 Sobic001G074700--Sobic010G154700 Sobic002G296200 Sobic002G296200 Sobic001G074700--Sobic002G296200 Sobic001G074700--Sobic009G119900 Sobic001G047800 Sobic001G047800 Sobic001G074700--Sobic001G047800 Sobic001G074700--Sobic002G418400 Sobic009G119900--Sobic002G356400 Sobic009G119900--Sobic003G209000 Sobic009G119900--Sobic004G310300 Sobic009G119900--Sobic004G170400 Sobic009G119900--Sobic004G259200 Sobic007G051000 Sobic007G051000 Sobic009G119900--Sobic007G051000 Sobic001G172000 Sobic001G172000 Sobic009G119900--Sobic001G172000 Sobic006G083500 Sobic006G083500 Sobic009G119900--Sobic006G083500 Sobic009G119900--Sobic010G154700 Sobic001G031900 Sobic001G031900 Sobic003G185500--Sobic001G031900 Sobic006G058900 Sobic006G058900 Sobic003G185500--Sobic006G058900 Sobic003G185500--Sobic003G141700 Sobic003G185500--Sobic004G170400 Sobic003G185500--Sobic001G074700 Sobic003G185500--Sobic007G114200 Sobic007G171500 Sobic007G171500 Sobic003G185500--Sobic007G171500 Sobic007G019100 Sobic007G019100 Sobic003G185500--Sobic007G019100 Sobic003G185500--Sobic001G342200 Sobic001G057300 Sobic001G057300 Sobic001G342200--Sobic001G057300 Sobic001G060300 Sobic001G060300 Sobic001G342200--Sobic001G060300 Sobic007G177200 Sobic007G177200 Sobic001G342200--Sobic007G177200 Sobic007G115100 Sobic007G115100 Sobic001G342200--Sobic007G115100 Sobic007G092100 Sobic007G092100 Sobic001G342200--Sobic007G092100 Sobic010G008800 Sobic010G008800 Sobic001G342200--Sobic010G008800 Sobic001G342200--Sobic004G170400 Sobic001G342200--Sobic001G074700 Sobic001G342200--Sobic001G031900 Sobic007G045600 Sobic007G045600 Sobic007G114200--Sobic007G045600 Sobic003G367451 Sobic003G367451 Sobic007G114200--Sobic003G367451 Sobic001G236300 Sobic001G236300 Sobic007G114200--Sobic001G236300 Sobic009G001400 Sobic009G001400 Sobic007G114200--Sobic009G001400 Sobic002G428200 Sobic002G428200 Sobic007G114200--Sobic002G428200 Sobic006G252200 Sobic006G252200 Sobic007G114200--Sobic006G252200 Sobic002G214900 Sobic002G214900 Sobic007G114200--Sobic002G214900 Sobic004G327300 Sobic004G327300 Sobic007G114200--Sobic004G327300 Sobic004G138800 Sobic004G138800 Sobic007G114200--Sobic004G138800
Octagon: transcription factors


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