Gene annotation
Transcriptome id Sobic.003G396000.1
Synonym Sb03g043290, RGLG2
Functional annotation copine, putative, expressed
UniProt C5XFJ5
Pfam PF13920 PF07002
Panther DB PTHR10857 PTHR10857:SF28
NCBI CDD KOG4172; Predicted E3 ubiquitin ligase
KEGG Orthology K16280; E3 ubiquitin-protein ligase RGLG
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G14420 : RING domain ligase2
RAP-DB (Rice) LOC_Os01g68060.1 : copine, putative, expressed
MaizeGDB (Corn) Zm00025a039401 , Zm00025a026350 , Zm00025a026352 , Zm00025a029281 , Zm00025a022311
Brachypodium KQK11115
Barley HORVU3Hr1G092250.9 , HORVU3Hr1G092250.3 , HORVU3Hr1G092250.2 , HORVU3Hr1G092250.1 , HORVU3Hr1G092250.7 , HORVU3Hr1G092250.6 , HORVU3Hr1G092250.5 , HORVU3Hr1G092250.4 , HORVU3Hr1G092250.8 , HORVU3Hr1G092250.20 , HORVU3Hr1G092250.19 , HORVU3Hr1G092250.18 , HORVU3Hr1G092250.13 , HORVU3Hr1G092250.12 , HORVU3Hr1G092250.11 , HORVU3Hr1G092250.10 , HORVU3Hr1G092250.17 , HORVU3Hr1G092250.16 , HORVU3Hr1G092250.15 , HORVU3Hr1G092250.14
Wheat TraesCS3B02G449200 , TraesCS3D02G408900 , TraesCS3D02G408900 , TraesCS3A02G414400 , TraesCS3A02G414400
Populus -


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cDNA sequences
Sobic.003G396000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G441600 potyvirus VPg interacting protein, putative, expressed -
2 Sobic.006G218700 tyrosine protein kinase domain containing protein, putative, expressed -
3 Sobic.003G379700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Increased expression in phyB-1 mutant(PubMedID : 26893475)@No apical meristem protein, putative, expressed -
4 Sobic.010G204300 expressed protein -
5 Sobic.001G076000 PHLOEM 2-LIKE A10, putative, expressed -
6 Sobic.003G332401 - K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
7 Sobic.004G293700 peroxisomal biogenesis factor 19, putative, expressed K13337: peroxin-19
8 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
9 Sobic.009G059700 thioredoxin, putative, expressed K03671: thioredoxin 1
10 Sobic.001G064800 expp1 protein precursor, putative, expressed -
11 Sobic.003G356700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.006G225600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
13 Sobic.002G296300 expressed protein -
14 Sobic.010G144400 glycosyltransferase, putative, expressed -
15 Sobic.004G172700 plant neutral invertase domain containing protein, expressed -
16 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
17 Sobic.004G158901 - -
18 Sobic.009G249000 CAMK_CAMK_like.5 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
19 Sobic.002G180600 expressed protein K17968: TRIAP1, TRIAP1/MDM35 family protein
20 Sobic.006G160600 histidine triad family protein, putative, expressed -


Gene co-expression network
sample Sobic003G396000 Sobic003G396000 Sobic001G441600 Sobic001G441600 Sobic003G396000--Sobic001G441600 Sobic006G218700 Sobic006G218700 Sobic003G396000--Sobic006G218700 Sobic003G379700 Sobic003G379700 Sobic003G396000--Sobic003G379700 Sobic010G204300 Sobic010G204300 Sobic003G396000--Sobic010G204300 Sobic001G076000 Sobic001G076000 Sobic003G396000--Sobic001G076000 Sobic003G332401 Sobic003G332401 Sobic003G396000--Sobic003G332401 Sobic004G293700 Sobic004G293700 Sobic003G396000--Sobic004G293700 Sobic001G478300 Sobic001G478300 Sobic003G396000--Sobic001G478300 Sobic009G059700 Sobic009G059700 Sobic003G396000--Sobic009G059700 Sobic003G116700 Sobic003G116700 Sobic001G441600--Sobic003G116700 Sobic008G161000 Sobic008G161000 Sobic001G441600--Sobic008G161000 Sobic001G335400 Sobic001G335400 Sobic001G441600--Sobic001G335400 Sobic009G016201 Sobic009G016201 Sobic001G441600--Sobic009G016201 Sobic001G441600--Sobic003G396000 Sobic009G152200 Sobic009G152200 Sobic001G441600--Sobic009G152200 Sobic003G115800 Sobic003G115800 Sobic001G441600--Sobic003G115800 Sobic010G071200 Sobic010G071200 Sobic001G441600--Sobic010G071200 Sobic003G317200 Sobic003G317200 Sobic001G441600--Sobic003G317200 Sobic009G134600 Sobic009G134600 Sobic006G218700--Sobic009G134600 Sobic006G218700--Sobic003G396000 Sobic003G044200 Sobic003G044200 Sobic006G218700--Sobic003G044200 Sobic003G119800 Sobic003G119800 Sobic006G218700--Sobic003G119800 Sobic006G218700--Sobic003G379700 Sobic006G218700--Sobic001G076000 Sobic009G167600 Sobic009G167600 Sobic006G218700--Sobic009G167600 Sobic003G056500 Sobic003G056500 Sobic006G218700--Sobic003G056500 Sobic003G376700 Sobic003G376700 Sobic006G218700--Sobic003G376700 Sobic003G379700--Sobic001G076000 Sobic003G379700--Sobic003G396000 Sobic008G094700 Sobic008G094700 Sobic003G379700--Sobic008G094700 Sobic005G105000 Sobic005G105000 Sobic003G379700--Sobic005G105000 Sobic003G379700--Sobic006G218700 Sobic003G379700--Sobic001G478300 Sobic004G320000 Sobic004G320000 Sobic003G379700--Sobic004G320000 Sobic003G379700--Sobic003G044200 Sobic009G011700 Sobic009G011700 Sobic003G379700--Sobic009G011700 Sobic010G204300--Sobic008G161000 Sobic010G204300--Sobic003G115800 Sobic007G059900 Sobic007G059900 Sobic010G204300--Sobic007G059900 Sobic001G147200 Sobic001G147200 Sobic010G204300--Sobic001G147200 Sobic002G296300 Sobic002G296300 Sobic010G204300--Sobic002G296300 Sobic002G202300 Sobic002G202300 Sobic010G204300--Sobic002G202300 Sobic003G181500 Sobic003G181500 Sobic010G204300--Sobic003G181500 Sobic006G062800 Sobic006G062800 Sobic010G204300--Sobic006G062800 Sobic010G246000 Sobic010G246000 Sobic010G204300--Sobic010G246000 Sobic001G149700 Sobic001G149700 Sobic001G076000--Sobic001G149700 Sobic001G076000--Sobic001G478300 Sobic008G142700 Sobic008G142700 Sobic001G076000--Sobic008G142700 Sobic001G076000--Sobic003G379700 Sobic001G427800 Sobic001G427800 Sobic001G076000--Sobic001G427800 Sobic001G076000--Sobic001G441600 Sobic001G076000--Sobic010G071200 Sobic006G257900 Sobic006G257900 Sobic001G076000--Sobic006G257900 Sobic001G076000--Sobic003G116700 Sobic003G332401--Sobic002G296300 Sobic003G332401--Sobic003G115800 Sobic003G311700 Sobic003G311700 Sobic003G332401--Sobic003G311700 Sobic009G246950 Sobic009G246950 Sobic003G332401--Sobic009G246950 Sobic007G186300 Sobic007G186300 Sobic003G332401--Sobic007G186300 Sobic002G090700 Sobic002G090700 Sobic003G332401--Sobic002G090700 Sobic003G007500 Sobic003G007500 Sobic003G332401--Sobic003G007500 Sobic001G054200 Sobic001G054200 Sobic003G332401--Sobic001G054200 Sobic002G368400 Sobic002G368400 Sobic003G332401--Sobic002G368400 Sobic010G253800 Sobic010G253800 Sobic004G293700--Sobic010G253800 Sobic004G079100 Sobic004G079100 Sobic004G293700--Sobic004G079100 Sobic010G083700 Sobic010G083700 Sobic004G293700--Sobic010G083700 Sobic004G293700--Sobic001G054200 Sobic004G248800 Sobic004G248800 Sobic004G293700--Sobic004G248800 Sobic009G171700 Sobic009G171700 Sobic004G293700--Sobic009G171700 Sobic002G264400 Sobic002G264400 Sobic004G293700--Sobic002G264400 Sobic006G141500 Sobic006G141500 Sobic004G293700--Sobic006G141500 Sobic003G220600 Sobic003G220600 Sobic004G293700--Sobic003G220600 Sobic004G231400 Sobic004G231400 Sobic001G478300--Sobic004G231400 Sobic001G478300--Sobic010G071200 Sobic006G209500 Sobic006G209500 Sobic001G478300--Sobic006G209500 Sobic001G478300--Sobic001G427800 Sobic001G478300--Sobic001G149700 Sobic010G055500 Sobic010G055500 Sobic001G478300--Sobic010G055500 Sobic004G263900 Sobic004G263900 Sobic001G478300--Sobic004G263900 Sobic003G273100 Sobic003G273100 Sobic001G478300--Sobic003G273100 Sobic004G274700 Sobic004G274700 Sobic001G478300--Sobic004G274700 Sobic001G162100 Sobic001G162100 Sobic009G059700--Sobic001G162100 Sobic008G016900 Sobic008G016900 Sobic009G059700--Sobic008G016900 Sobic001G283500 Sobic001G283500 Sobic009G059700--Sobic001G283500 Sobic006G225600 Sobic006G225600 Sobic009G059700--Sobic006G225600 Sobic002G330300 Sobic002G330300 Sobic009G059700--Sobic002G330300 Sobic009G059700--Sobic002G368400 Sobic002G119800 Sobic002G119800 Sobic009G059700--Sobic002G119800 Sobic009G059700--Sobic009G134600 Sobic010G062800 Sobic010G062800 Sobic009G059700--Sobic010G062800
Octagon: transcription factors


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