Gene annotation
Transcriptome id Sobic.003G379700.1,Sobic.003G379700.2
Synonym AF1,NAC domain containing transcription factor, ANAC002, ATAF1, Sb03g041920
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Increased expression in phyB-1 mutant (PubMedID : 26893475)
No apical meristem protein, putative, expressed
UniProt A0A1B6Q7D9 , A0A1B6Q7D2
Pfam PF02365
Panther DB PTHR31719 PTHR31719:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G01720 : NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
RAP-DB (Rice) LOC_Os01g66120.3,LOC_Os01g66120.1 : No apical meristem protein, putative, expressed
MaizeGDB (Corn) Zm00025a043734 , Zm00025a002287 , Zm00025a013388 , Zm00025a049186 , Zm00025a016464 , Zm00025a047952 , Zm00025a040616 , Zm00025a035397 , Zm00025a007386 , Zm00025a008743 , Zm00025a025343 , Zm00025a052457 , Zm00025a034042 , Zm00025a048416 , Zm00025a026546 , Zm00025a047596 , Zm00025a045432 , Zm00025a009747
Brachypodium KQK14591 , KQK02753 , KQJ90847 , KQK19730 , KQJ85858 , KQK20318 , KQK06182 , KQK15684 , KQK15686 , KQJ84638 , KQK10926 , KQJ97887 , KQK15688 , PNT71229 , KQK10307 , KQK21867 , PNT76596
Barley HORVU5Hr1G087840.10 , HORVU4Hr1G017430.7 , HORVU4Hr1G017430.6 , HORVU4Hr1G017430.5 , HORVU4Hr1G017430.4 , HORVU4Hr1G017430.3 , HORVU4Hr1G017430.2 , HORVU4Hr1G017430.1 , HORVU4Hr1G017430.9 , HORVU4Hr1G017430.8 , HORVU2Hr1G017470.1 , HORVU2Hr1G017470.3 , HORVU2Hr1G017470.2 , HORVU2Hr1G017470.5 , HORVU2Hr1G017470.4 , HORVU2Hr1G017470.7 , HORVU2Hr1G017470.6 , HORVU2Hr1G017470.9 , HORVU2Hr1G017470.8 , HORVU6Hr1G015950.1 , HORVU3Hr1G094170.1 , HORVU7Hr1G012760.10 , HORVU4Hr1G017430.11 , HORVU4Hr1G017430.10 , HORVU7Hr1G012740.1 , HORVU1Hr1G063740.3 , HORVU1Hr1G063740.2 , HORVU1Hr1G063740.1 , HORVU1Hr1G063740.7 , HORVU1Hr1G063740.6 , HORVU1Hr1G063740.5 , HORVU1Hr1G063740.4 , HORVU1Hr1G063740.9 , HORVU1Hr1G063740.8 , HORVU5Hr1G111590.4 , HORVU5Hr1G111590.5 , HORVU5Hr1G111590.6 , HORVU5Hr1G111590.7 , HORVU5Hr1G111590.1 , HORVU5Hr1G111590.2 , HORVU5Hr1G111590.3 , HORVU2Hr1G017460.10 , HORVU1Hr1G063730.1 , HORVU7Hr1G012760.3 , HORVU7Hr1G012760.2 , HORVU7Hr1G012760.7 , HORVU7Hr1G012760.6 , HORVU7Hr1G012760.5 , HORVU7Hr1G012760.4 , HORVU7Hr1G012760.9 , HORVU7Hr1G012760.8 , HORVU2Hr1G103930.2 , HORVU2Hr1G103930.3 , HORVU2Hr1G103930.1 , HORVU2Hr1G103930.6 , HORVU2Hr1G103930.7 , HORVU2Hr1G103930.4 , HORVU2Hr1G103930.5 , HORVU2Hr1G103930.8 , HORVU2Hr1G103930.9 , HORVU0Hr1G028970.1 , HORVU6Hr1G019380.5 , HORVU6Hr1G019380.3 , HORVU6Hr1G019380.2 , HORVU0Hr1G026330.4 , HORVU0Hr1G026330.5 , HORVU0Hr1G026330.1 , HORVU0Hr1G026330.2 , HORVU4Hr1G051290.7 , HORVU4Hr1G051290.1 , HORVU2Hr1G004130.1 , HORVU1Hr1G021800.2 , HORVU1Hr1G021800.3 , HORVU1Hr1G021800.1 , HORVU1Hr1G063740.10 , HORVU2Hr1G017470.15 , HORVU2Hr1G017470.14 , HORVU2Hr1G017470.11 , HORVU2Hr1G017470.10 , HORVU2Hr1G017470.13 , HORVU2Hr1G017470.12 , HORVU4Hr1G012030.1 , HORVU4Hr1G012030.2 , HORVU5Hr1G045650.8 , HORVU5Hr1G045650.5 , HORVU5Hr1G045650.4 , HORVU5Hr1G045650.7 , HORVU5Hr1G045650.6 , HORVU5Hr1G045650.1 , HORVU5Hr1G045650.3 , HORVU5Hr1G045650.2 , HORVU2Hr1G017460.8 , HORVU2Hr1G017460.9 , HORVU2Hr1G017460.2 , HORVU2Hr1G017460.3 , HORVU2Hr1G017460.6 , HORVU2Hr1G017460.7 , HORVU2Hr1G017460.4 , HORVU2Hr1G017460.5 , HORVU2Hr1G039640.2 , HORVU5Hr1G087840.8 , HORVU5Hr1G087840.9 , HORVU5Hr1G087840.3 , HORVU5Hr1G087840.4 , HORVU5Hr1G087840.5 , HORVU4Hr1G089660.1 , HORVU2Hr1G039640.3 , HORVU2Hr1G039640.4
Wheat TraesCS2B02G119000 , TraesCS5A02G049100 , TraesCS5A02G049100 , TraesCS3B02G371200 , TraesCS1D02G263800 , TraesCS3B02G439600 , TraesCS7D02G063300 , TraesCS2D02G101300 , TraesCS2B02G228900 , TraesCS5A02G143200 , TraesCS4A02G421200 , TraesCS6D02G096300 , TraesCS6A02G237900 , TraesCS6A02G108300 , TraesCS6A02G108300 , TraesCS5D02G360700 , TraesCS2A02G462500 , TraesCS4B02G173600 , TraesCS4D02G175700 , TraesCS3D02G401200 , TraesCS4A02G420200 , TraesCS5D02G148800 , TraesCS2A02G201800 , TraesCS2A02G201800 , TraesCS5A02G468300 , TraesCS2A02G101900 , TraesCS2B02G119100 , TraesCS3A02G406000 , TraesCS7D02G062600 , TraesCS2D02G101400 , TraesCS4A02G131000 , TraesCS4B02G072400 , TraesCS5D02G481200 , TraesCS5D02G481200 , TraesCS2A02G102000 , TraesCS1B02G274300 , TraesCS2D02G462900 , TraesCS4A02G242700 , TraesCS4A02G219700 , TraesCS3A02G078400 , TraesCS2B02G228900 , TraesCS4D02G071200 , TraesCS5B02G480900 , TraesCS2D02G214100 , TraesCS5B02G054200 , TraesCS5B02G054200 , TraesCS5D02G059700 , TraesCS5D02G059700 , TraesCS4B02G098200 , TraesCS1A02G263700 , TraesCS4D02G094400 , TraesCS5B02G142100
Populus -


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cDNA sequences
Sobic.003G379700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G076000 PHLOEM 2-LIKE A10, putative, expressed -
2 Sobic.003G396000 copine, putative, expressed K16280: E3 ubiquitin-protein ligase RGLG
3 Sobic.008G094700 no apical meristem protein, putative, expressed -
4 Sobic.005G105000 STE_MEKK_ste11_MAP3K.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
5 Sobic.006G218700 tyrosine protein kinase domain containing protein, putative, expressed -
6 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
7 Sobic.004G320000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.003G044200 C2 domain containing protein, putative, expressed -
9 Sobic.009G011700 protein kinase APK1A, chloroplast precursor, putative, expressed K04733: interleukin-1 receptor-associated kinase 4
10 Sobic.009G237600 transcription factor, putative, expressed K09060: plant G-box-binding factor
11 Sobic.003G000800 RWP-RK domain-containing protein, putative, expressed -
12 Sobic.004G234900 membrane-anchored ubiquitin-fold protein, putative, expressed -
13 Sobic.007G154701 - -
14 Sobic.002G223200 OsSigP6 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/Lys catalytic dyad, expressed K03100: signal peptidase I
15 Sobic.001G148300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
16 Sobic.003G295400 MAC/Perforin domain containing protein, putative, expressed -
17 Sobic.001G078500 expressed protein -
18 Sobic.006G241600 expressed protein -
19 Sobic.003G305400 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
20 Sobic.004G153600 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7


Gene co-expression network
sample Sobic003G379700 Sobic003G379700 Sobic001G076000 Sobic001G076000 Sobic003G379700--Sobic001G076000 Sobic003G396000 Sobic003G396000 Sobic003G379700--Sobic003G396000 Sobic008G094700 Sobic008G094700 Sobic003G379700--Sobic008G094700 Sobic005G105000 Sobic005G105000 Sobic003G379700--Sobic005G105000 Sobic006G218700 Sobic006G218700 Sobic003G379700--Sobic006G218700 Sobic001G478300 Sobic001G478300 Sobic003G379700--Sobic001G478300 Sobic004G320000 Sobic004G320000 Sobic003G379700--Sobic004G320000 Sobic003G044200 Sobic003G044200 Sobic003G379700--Sobic003G044200 Sobic009G011700 Sobic009G011700 Sobic003G379700--Sobic009G011700 Sobic001G149700 Sobic001G149700 Sobic001G076000--Sobic001G149700 Sobic001G076000--Sobic001G478300 Sobic008G142700 Sobic008G142700 Sobic001G076000--Sobic008G142700 Sobic001G076000--Sobic003G379700 Sobic001G427800 Sobic001G427800 Sobic001G076000--Sobic001G427800 Sobic001G441600 Sobic001G441600 Sobic001G076000--Sobic001G441600 Sobic010G071200 Sobic010G071200 Sobic001G076000--Sobic010G071200 Sobic006G257900 Sobic006G257900 Sobic001G076000--Sobic006G257900 Sobic003G116700 Sobic003G116700 Sobic001G076000--Sobic003G116700 Sobic003G396000--Sobic001G441600 Sobic003G396000--Sobic006G218700 Sobic003G396000--Sobic003G379700 Sobic010G204300 Sobic010G204300 Sobic003G396000--Sobic010G204300 Sobic003G396000--Sobic001G076000 Sobic003G332401 Sobic003G332401 Sobic003G396000--Sobic003G332401 Sobic004G293700 Sobic004G293700 Sobic003G396000--Sobic004G293700 Sobic003G396000--Sobic001G478300 Sobic009G059700 Sobic009G059700 Sobic003G396000--Sobic009G059700 Sobic004G153600 Sobic004G153600 Sobic008G094700--Sobic004G153600 Sobic008G094700--Sobic003G379700 Sobic004G275200 Sobic004G275200 Sobic008G094700--Sobic004G275200 Sobic007G154701 Sobic007G154701 Sobic008G094700--Sobic007G154701 Sobic006G152600 Sobic006G152600 Sobic008G094700--Sobic006G152600 Sobic003G081100 Sobic003G081100 Sobic008G094700--Sobic003G081100 Sobic008G094700--Sobic001G076000 Sobic003G127400 Sobic003G127400 Sobic008G094700--Sobic003G127400 Sobic002G241400 Sobic002G241400 Sobic008G094700--Sobic002G241400 Sobic009G138100 Sobic009G138100 Sobic005G105000--Sobic009G138100 Sobic009G172400 Sobic009G172400 Sobic005G105000--Sobic009G172400 Sobic010G174500 Sobic010G174500 Sobic005G105000--Sobic010G174500 Sobic005G105000--Sobic003G044200 Sobic001G472600 Sobic001G472600 Sobic005G105000--Sobic001G472600 Sobic005G105000--Sobic003G379700 Sobic006G209400 Sobic006G209400 Sobic005G105000--Sobic006G209400 Sobic003G248200 Sobic003G248200 Sobic005G105000--Sobic003G248200 Sobic004G267300 Sobic004G267300 Sobic005G105000--Sobic004G267300 Sobic009G134600 Sobic009G134600 Sobic006G218700--Sobic009G134600 Sobic006G218700--Sobic003G396000 Sobic006G218700--Sobic003G044200 Sobic003G119800 Sobic003G119800 Sobic006G218700--Sobic003G119800 Sobic006G218700--Sobic003G379700 Sobic006G218700--Sobic001G076000 Sobic009G167600 Sobic009G167600 Sobic006G218700--Sobic009G167600 Sobic003G056500 Sobic003G056500 Sobic006G218700--Sobic003G056500 Sobic003G376700 Sobic003G376700 Sobic006G218700--Sobic003G376700 Sobic004G231400 Sobic004G231400 Sobic001G478300--Sobic004G231400 Sobic001G478300--Sobic010G071200 Sobic006G209500 Sobic006G209500 Sobic001G478300--Sobic006G209500 Sobic001G478300--Sobic001G427800 Sobic001G478300--Sobic001G149700 Sobic010G055500 Sobic010G055500 Sobic001G478300--Sobic010G055500 Sobic004G263900 Sobic004G263900 Sobic001G478300--Sobic004G263900 Sobic003G273100 Sobic003G273100 Sobic001G478300--Sobic003G273100 Sobic004G274700 Sobic004G274700 Sobic001G478300--Sobic004G274700 Sobic008G174300 Sobic008G174300 Sobic004G320000--Sobic008G174300 Sobic004G349800 Sobic004G349800 Sobic004G320000--Sobic004G349800 Sobic001G512900 Sobic001G512900 Sobic004G320000--Sobic001G512900 Sobic004G320000--Sobic001G478300 Sobic010G260500 Sobic010G260500 Sobic004G320000--Sobic010G260500 Sobic001G124300 Sobic001G124300 Sobic004G320000--Sobic001G124300 Sobic009G027000 Sobic009G027000 Sobic004G320000--Sobic009G027000 Sobic004G203100 Sobic004G203100 Sobic004G320000--Sobic004G203100 Sobic003G333600 Sobic003G333600 Sobic004G320000--Sobic003G333600 Sobic001G065700 Sobic001G065700 Sobic003G044200--Sobic001G065700 Sobic001G098200 Sobic001G098200 Sobic003G044200--Sobic001G098200 Sobic006G225600 Sobic006G225600 Sobic003G044200--Sobic006G225600 Sobic003G044200--Sobic005G105000 Sobic003G044200--Sobic006G218700 Sobic003G044200--Sobic009G167600 Sobic001G503300 Sobic001G503300 Sobic003G044200--Sobic001G503300 Sobic009G137800 Sobic009G137800 Sobic003G044200--Sobic009G137800 Sobic009G193400 Sobic009G193400 Sobic003G044200--Sobic009G193400 Sobic009G011700--Sobic001G478300 Sobic008G180900 Sobic008G180900 Sobic009G011700--Sobic008G180900 Sobic009G011700--Sobic001G076000 Sobic009G011700--Sobic001G427800 Sobic009G011700--Sobic004G231400 Sobic004G049100 Sobic004G049100 Sobic009G011700--Sobic004G049100 Sobic001G371300 Sobic001G371300 Sobic009G011700--Sobic001G371300 Sobic009G237600 Sobic009G237600 Sobic009G011700--Sobic009G237600 Sobic009G011700--Sobic010G071200
Octagon: transcription factors


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