Gene annotation
Transcriptome id Sobic.002G223200.1
Synonym Sb02g026400
Functional annotation OsSigP6 - Putative Type I Signal Peptidase homologue
employs a putative Ser/Lys catalytic dyad, expressed
UniProt C5X287
Pfam PF00717
Panther DB PTHR12383 PTHR12383:SF15
NCBI CDD KOG0171; Mitochondrial inner membrane protease, subunit IMP1
KEGG Orthology K03100; signal peptidase I
Gene Ontology GO:0016020; membrane GO:0008236serine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT1G06870 : Peptidase S24/S26A/S26B/S26C family protein
RAP-DB (Rice) LOC_Os09g28000.1 : OsSigP6 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed
MaizeGDB (Corn) Zm00025a008299 , Zm00025a047230
Brachypodium KQK13031 , KQK13032 , KQJ90493
Barley HORVU5Hr1G097710.7 , HORVU5Hr1G097710.6 , HORVU5Hr1G097710.5 , HORVU5Hr1G097710.4 , HORVU5Hr1G097710.3 , HORVU5Hr1G097710.2 , HORVU5Hr1G097710.1 , HORVU5Hr1G097710.9 , HORVU5Hr1G097710.8 , HORVU5Hr1G067800.1 , HORVU5Hr1G067800.2 , HORVU5Hr1G067800.3
Wheat TraesCS5A02G235700 , TraesCS5B02G234100 , TraesCS5B02G234100 , TraesCS5D02G412300 , TraesCS5D02G412300 , TraesCS5D02G412300 , TraesCS5D02G412300 , TraesCS5D02G242800 , TraesCS5D02G242800 , TraesCS5A02G402100 , TraesCS5A02G402100 , TraesCS5B02G406800 , TraesCS5B02G406800 , TraesCS5B02G406800 , TraesCS5B02G406800 , TraesCS5B02G406800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G295400 MAC/Perforin domain containing protein, putative, expressed -
2 Sobic.010G253800 expressed protein -
3 Sobic.002G247500 ethylene-insensitive 3, putative, expressed K14514: ethylene-insensitive protein 3
4 Sobic.010G000900 spotted leaf 11, putative, expressed -
5 Sobic.002G122700 expressed protein -
6 Sobic.006G225600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
7 Sobic.004G234900 membrane-anchored ubiquitin-fold protein, putative, expressed -
8 Sobic.008G107500 WRKY96, expressed -
9 Sobic.010G168600 ethylene-responsive element-binding protein, putative, expressed -
10 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
11 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
12 Sobic.002G251700 no apical meristem protein, putative, expressed -
13 Sobic.004G293700 peroxisomal biogenesis factor 19, putative, expressed K13337: peroxin-19
14 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
15 Sobic.001G057800 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
16 Sobic.001G371300 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
17 Sobic.001G078500 expressed protein -
18 Sobic.002G352700 expressed protein K08505: protein transport protein SFT1
19 Sobic.004G079100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
20 Sobic.006G263900 ubiquinone biosynthesis protein COQ4, putative, expressed K18586: ubiquinone biosynthesis protein COQ4


Gene co-expression network
sample Sobic002G223200 Sobic002G223200 Sobic003G295400 Sobic003G295400 Sobic002G223200--Sobic003G295400 Sobic010G253800 Sobic010G253800 Sobic002G223200--Sobic010G253800 Sobic002G247500 Sobic002G247500 Sobic002G223200--Sobic002G247500 Sobic010G000900 Sobic010G000900 Sobic002G223200--Sobic010G000900 Sobic002G122700 Sobic002G122700 Sobic002G223200--Sobic002G122700 Sobic006G225600 Sobic006G225600 Sobic002G223200--Sobic006G225600 Sobic004G234900 Sobic004G234900 Sobic002G223200--Sobic004G234900 Sobic008G107500 Sobic008G107500 Sobic002G223200--Sobic008G107500 Sobic010G168600 Sobic010G168600 Sobic002G223200--Sobic010G168600 Sobic003G007500 Sobic003G007500 Sobic003G295400--Sobic003G007500 Sobic003G295400--Sobic006G225600 Sobic003G295400--Sobic010G253800 Sobic002G251700 Sobic002G251700 Sobic003G295400--Sobic002G251700 Sobic001G078500 Sobic001G078500 Sobic003G295400--Sobic001G078500 Sobic001G051200 Sobic001G051200 Sobic003G295400--Sobic001G051200 Sobic009G193400 Sobic009G193400 Sobic003G295400--Sobic009G193400 Sobic003G295400--Sobic010G168600 Sobic009G171700 Sobic009G171700 Sobic003G295400--Sobic009G171700 Sobic009G146100 Sobic009G146100 Sobic010G253800--Sobic009G146100 Sobic004G293700 Sobic004G293700 Sobic010G253800--Sobic004G293700 Sobic010G083700 Sobic010G083700 Sobic010G253800--Sobic010G083700 Sobic010G253800--Sobic002G247500 Sobic002G352700 Sobic002G352700 Sobic010G253800--Sobic002G352700 Sobic001G007200 Sobic001G007200 Sobic010G253800--Sobic001G007200 Sobic006G263900 Sobic006G263900 Sobic010G253800--Sobic006G263900 Sobic010G253800--Sobic009G171700 Sobic001G054200 Sobic001G054200 Sobic010G253800--Sobic001G054200 Sobic002G247500--Sobic010G253800 Sobic002G247500--Sobic001G007200 Sobic002G247500--Sobic010G083700 Sobic002G247500--Sobic004G293700 Sobic002G247500--Sobic009G146100 Sobic002G247500--Sobic002G223200 Sobic002G247500--Sobic006G263900 Sobic002G264400 Sobic002G264400 Sobic002G247500--Sobic002G264400 Sobic002G247500--Sobic010G000900 Sobic002G400000 Sobic002G400000 Sobic010G000900--Sobic002G400000 Sobic003G012200 Sobic003G012200 Sobic010G000900--Sobic003G012200 Sobic001G047400 Sobic001G047400 Sobic010G000900--Sobic001G047400 Sobic003G261400 Sobic003G261400 Sobic010G000900--Sobic003G261400 Sobic004G130900 Sobic004G130900 Sobic010G000900--Sobic004G130900 Sobic010G000900--Sobic001G051200 Sobic001G323000 Sobic001G323000 Sobic010G000900--Sobic001G323000 Sobic001G388200 Sobic001G388200 Sobic010G000900--Sobic001G388200 Sobic001G085100 Sobic001G085100 Sobic010G000900--Sobic001G085100 Sobic002G122700--Sobic004G234900 Sobic002G122700--Sobic006G225600 Sobic001G434900 Sobic001G434900 Sobic002G122700--Sobic001G434900 Sobic010G101500 Sobic010G101500 Sobic002G122700--Sobic010G101500 Sobic001G220400 Sobic001G220400 Sobic002G122700--Sobic001G220400 Sobic001G329100 Sobic001G329100 Sobic002G122700--Sobic001G329100 Sobic002G122700--Sobic010G000900 Sobic010G188100 Sobic010G188100 Sobic002G122700--Sobic010G188100 Sobic003G248600 Sobic003G248600 Sobic002G122700--Sobic003G248600 Sobic006G225600--Sobic004G234900 Sobic006G225600--Sobic002G251700 Sobic001G162100 Sobic001G162100 Sobic006G225600--Sobic001G162100 Sobic001G098200 Sobic001G098200 Sobic006G225600--Sobic001G098200 Sobic006G225600--Sobic003G295400 Sobic006G225600--Sobic002G122700 Sobic004G274400 Sobic004G274400 Sobic006G225600--Sobic004G274400 Sobic006G225600--Sobic001G051200 Sobic006G225600--Sobic001G434900 Sobic004G234900--Sobic001G098200 Sobic004G234900--Sobic006G225600 Sobic004G234900--Sobic002G122700 Sobic004G234900--Sobic001G162100 Sobic004G234900--Sobic002G251700 Sobic010G174500 Sobic010G174500 Sobic004G234900--Sobic010G174500 Sobic006G254800 Sobic006G254800 Sobic004G234900--Sobic006G254800 Sobic001G180900 Sobic001G180900 Sobic004G234900--Sobic001G180900 Sobic004G234900--Sobic010G000900 Sobic002G258100 Sobic002G258100 Sobic008G107500--Sobic002G258100 Sobic001G393800 Sobic001G393800 Sobic008G107500--Sobic001G393800 Sobic005G150800 Sobic005G150800 Sobic008G107500--Sobic005G150800 Sobic002G180600 Sobic002G180600 Sobic008G107500--Sobic002G180600 Sobic001G010400 Sobic001G010400 Sobic008G107500--Sobic001G010400 Sobic008G107500--Sobic003G295400 Sobic004G203100 Sobic004G203100 Sobic008G107500--Sobic004G203100 Sobic002G175500 Sobic002G175500 Sobic008G107500--Sobic002G175500 Sobic009G003900 Sobic009G003900 Sobic008G107500--Sobic009G003900 Sobic010G168600--Sobic010G083700 Sobic010G168600--Sobic001G078500 Sobic009G246950 Sobic009G246950 Sobic010G168600--Sobic009G246950 Sobic010G168600--Sobic002G352700 Sobic010G168600--Sobic006G263900 Sobic010G168600--Sobic003G007500 Sobic010G168600--Sobic009G171700 Sobic002G256300 Sobic002G256300 Sobic010G168600--Sobic002G256300 Sobic004G104900 Sobic004G104900 Sobic010G168600--Sobic004G104900
Octagon: transcription factors


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