Gene annotation
Transcriptome id Sobic.003G356700.1
Synonym Sb03g039900
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt C5XPT6
Pfam PF11820
Panther DB PTHR33128 PTHR33128:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G48660 : Protein of unknown function (DUF 3339)
RAP-DB (Rice) LOC_Os05g01290.1 : expressed protein
MaizeGDB (Corn) Zm00025a009089
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G396000 copine, putative, expressed K16280: E3 ubiquitin-protein ligase RGLG
2 Sobic.007G011000 synaptobrevin-related family protein, putative, expressed -
3 Sobic.003G035700 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA2 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
4 Sobic.002G292600 phytoene synthase(PubMedID : 22672222)@carotenoid biosynthesi(PubMedID : 18162592)@PSY3 expression influences root carotenogenesis and defines a potential bottleneck upstream of NCED(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
5 Sobic.004G280800 Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed K11805: DCAF7, DDB1- and CUL4-associated factor 7
6 Sobic.004G325700 CYPRO4, putative, expressed -
7 Sobic.004G042600 protein kinase domain containing protein, expressed -
8 Sobic.006G218700 tyrosine protein kinase domain containing protein, putative, expressed -
9 Sobic.001G094400 OsCML4 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin
10 Sobic.004G183400 expressed protein -
11 Sobic.010G200700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.010G046500 csAtPR5, putative, expressed -
13 Sobic.010G225100 DUF640 domain containing protein, putative, expressed -
14 Sobic.003G275100 green ripe-like, putative, expressed -
15 Sobic.007G171000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
16 Sobic.010G041700 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
17 Sobic.003G423500 SbGlu1 promoter sequences(-2000 bp to -1 bp) bound and upregulated by SbSTOP1(PubMedID : 30387379)@"beta-1,3-glucanase, localized throuout cytoplasm and nuclei with no specific subcellular localization"(PubMedID : 25311645)@glycosyl hydrolases family 17, putative, expressed -
18 Sobic.006G228300 ethylene-responsive protein related, putative, expressed -
19 Sobic.004G145200 membrane attack complex component/perforin/complement C9, putative, expressed -
20 Sobic.002G119800 arginyl-tRNA synthetase, putative, expressed -


Gene co-expression network
sample Sobic003G356700 Sobic003G356700 Sobic003G396000 Sobic003G396000 Sobic003G356700--Sobic003G396000 Sobic007G011000 Sobic007G011000 Sobic003G356700--Sobic007G011000 Sobic003G035700 Sobic003G035700 Sobic003G356700--Sobic003G035700 Sobic002G292600 Sobic002G292600 Sobic003G356700--Sobic002G292600 Sobic004G280800 Sobic004G280800 Sobic003G356700--Sobic004G280800 Sobic004G325700 Sobic004G325700 Sobic003G356700--Sobic004G325700 Sobic004G042600 Sobic004G042600 Sobic003G356700--Sobic004G042600 Sobic006G218700 Sobic006G218700 Sobic003G356700--Sobic006G218700 Sobic001G094400 Sobic001G094400 Sobic003G356700--Sobic001G094400 Sobic001G441600 Sobic001G441600 Sobic003G396000--Sobic001G441600 Sobic003G396000--Sobic006G218700 Sobic003G379700 Sobic003G379700 Sobic003G396000--Sobic003G379700 Sobic010G204300 Sobic010G204300 Sobic003G396000--Sobic010G204300 Sobic001G076000 Sobic001G076000 Sobic003G396000--Sobic001G076000 Sobic003G332401 Sobic003G332401 Sobic003G396000--Sobic003G332401 Sobic004G293700 Sobic004G293700 Sobic003G396000--Sobic004G293700 Sobic001G478300 Sobic001G478300 Sobic003G396000--Sobic001G478300 Sobic009G059700 Sobic009G059700 Sobic003G396000--Sobic009G059700 Sobic002G118600 Sobic002G118600 Sobic007G011000--Sobic002G118600 Sobic002G330300 Sobic002G330300 Sobic007G011000--Sobic002G330300 Sobic010G228000 Sobic010G228000 Sobic007G011000--Sobic010G228000 Sobic007G212200 Sobic007G212200 Sobic007G011000--Sobic007G212200 Sobic007G011000--Sobic004G280800 Sobic003G425200 Sobic003G425200 Sobic007G011000--Sobic003G425200 Sobic002G354900 Sobic002G354900 Sobic007G011000--Sobic002G354900 Sobic010G041700 Sobic010G041700 Sobic007G011000--Sobic010G041700 Sobic004G025000 Sobic004G025000 Sobic007G011000--Sobic004G025000 Sobic003G423500 Sobic003G423500 Sobic003G035700--Sobic003G423500 Sobic004G147900 Sobic004G147900 Sobic003G035700--Sobic004G147900 Sobic010G200700 Sobic010G200700 Sobic003G035700--Sobic010G200700 Sobic004G195300 Sobic004G195300 Sobic003G035700--Sobic004G195300 Sobic004G297200 Sobic004G297200 Sobic003G035700--Sobic004G297200 Sobic010G078600 Sobic010G078600 Sobic003G035700--Sobic010G078600 Sobic001G290400 Sobic001G290400 Sobic003G035700--Sobic001G290400 Sobic003G012800 Sobic003G012800 Sobic003G035700--Sobic003G012800 Sobic001G482700 Sobic001G482700 Sobic003G035700--Sobic001G482700 Sobic004G145200 Sobic004G145200 Sobic002G292600--Sobic004G145200 Sobic002G292600--Sobic003G356700 Sobic003G424500 Sobic003G424500 Sobic002G292600--Sobic003G424500 Sobic003G056500 Sobic003G056500 Sobic002G292600--Sobic003G056500 Sobic002G292600--Sobic006G218700 Sobic001G403600 Sobic001G403600 Sobic002G292600--Sobic001G403600 Sobic002G119800 Sobic002G119800 Sobic002G292600--Sobic002G119800 Sobic002G292600--Sobic007G011000 Sobic001G342600 Sobic001G342600 Sobic002G292600--Sobic001G342600 Sobic004G280800--Sobic010G228000 Sobic006G263100 Sobic006G263100 Sobic004G280800--Sobic006G263100 Sobic004G280800--Sobic002G118600 Sobic004G280800--Sobic001G290400 Sobic003G338900 Sobic003G338900 Sobic004G280800--Sobic003G338900 Sobic004G280800--Sobic004G025000 Sobic004G280800--Sobic007G011000 Sobic004G053200 Sobic004G053200 Sobic004G280800--Sobic004G053200 Sobic001G189700 Sobic001G189700 Sobic004G280800--Sobic001G189700 Sobic008G161000 Sobic008G161000 Sobic004G325700--Sobic008G161000 Sobic006G179500 Sobic006G179500 Sobic004G325700--Sobic006G179500 Sobic003G181500 Sobic003G181500 Sobic004G325700--Sobic003G181500 Sobic002G140300 Sobic002G140300 Sobic004G325700--Sobic002G140300 Sobic003G249800 Sobic003G249800 Sobic004G325700--Sobic003G249800 Sobic001G304700 Sobic001G304700 Sobic004G325700--Sobic001G304700 Sobic009G033700 Sobic009G033700 Sobic004G325700--Sobic009G033700 Sobic001G095300 Sobic001G095300 Sobic004G325700--Sobic001G095300 Sobic006G062800 Sobic006G062800 Sobic004G325700--Sobic006G062800 Sobic004G042600--Sobic010G200700 Sobic004G042600--Sobic004G297200 Sobic002G080000 Sobic002G080000 Sobic004G042600--Sobic002G080000 Sobic010G175200 Sobic010G175200 Sobic004G042600--Sobic010G175200 Sobic006G228300 Sobic006G228300 Sobic004G042600--Sobic006G228300 Sobic003G363200 Sobic003G363200 Sobic004G042600--Sobic003G363200 Sobic002G219200 Sobic002G219200 Sobic004G042600--Sobic002G219200 Sobic006G078400 Sobic006G078400 Sobic004G042600--Sobic006G078400 Sobic003G429300 Sobic003G429300 Sobic004G042600--Sobic003G429300 Sobic009G134600 Sobic009G134600 Sobic006G218700--Sobic009G134600 Sobic006G218700--Sobic003G396000 Sobic003G044200 Sobic003G044200 Sobic006G218700--Sobic003G044200 Sobic003G119800 Sobic003G119800 Sobic006G218700--Sobic003G119800 Sobic006G218700--Sobic003G379700 Sobic006G218700--Sobic001G076000 Sobic009G167600 Sobic009G167600 Sobic006G218700--Sobic009G167600 Sobic006G218700--Sobic003G056500 Sobic003G376700 Sobic003G376700 Sobic006G218700--Sobic003G376700 Sobic002G180600 Sobic002G180600 Sobic001G094400--Sobic002G180600 Sobic001G094400--Sobic003G429300 Sobic002G261800 Sobic002G261800 Sobic001G094400--Sobic002G261800 Sobic001G094400--Sobic010G228000 Sobic001G206400 Sobic001G206400 Sobic001G094400--Sobic001G206400 Sobic001G094400--Sobic004G325700 Sobic001G064800 Sobic001G064800 Sobic001G094400--Sobic001G064800 Sobic007G171000 Sobic007G171000 Sobic001G094400--Sobic007G171000 Sobic001G094400--Sobic006G062800
Octagon: transcription factors


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