Gene annotation
Transcriptome id Sobic.010G225100.1
Synonym LSH3
Functional annotation DUF640 domain containing protein, putative, expressed
UniProt -
Pfam PF04852
Panther DB PTHR31165
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G07090 : Protein of unknown function (DUF640)
RAP-DB (Rice) LOC_Os06g46030.1 : DUF640 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a021109 , Zm00025a019050 , Zm00025a041930 , Zm00025a006596 , Zm00025a039740 , Zm00025a037663 , Zm00025a032852 , Zm00025a056514 , Zm00025a043957 , Zm00025a044984 , Zm00025a027009 , Zm00025a037773 , Zm00025a010702 , Zm00025a051795
Brachypodium KQK10399 , KQK00399 , KQK17088 , KQK17087 , KQK10400 , KQJ83599 , KQJ93496 , KQK21000 , KQJ97098 , KQK00400 , KQK06795
Barley HORVU3Hr1G088000.1 , HORVU3Hr1G088000.3 , HORVU3Hr1G088000.2 , HORVU3Hr1G088000.5 , HORVU3Hr1G088000.4 , HORVU3Hr1G088000.7 , HORVU3Hr1G088000.6 , HORVU3Hr1G088000.8 , HORVU1Hr1G041240.2 , HORVU1Hr1G041240.1 , HORVU1Hr1G041240.6 , HORVU1Hr1G041240.7 , HORVU1Hr1G041240.4 , HORVU1Hr1G041240.5 , HORVU7Hr1G106960.7 , HORVU7Hr1G106960.6 , HORVU7Hr1G106960.5 , HORVU7Hr1G106960.4 , HORVU7Hr1G106960.3 , HORVU7Hr1G106960.2 , HORVU1Hr1G060250.1 , HORVU6Hr1G058340.2 , HORVU6Hr1G058340.3 , HORVU2Hr1G060890.5 , HORVU2Hr1G060890.4 , HORVU2Hr1G060890.7 , HORVU2Hr1G060890.6 , HORVU2Hr1G060890.3 , HORVU2Hr1G060890.2 , HORVU2Hr1G060890.8
Wheat TraesCS1B02G235800 , TraesCS1A02G154900
Populus -


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cDNA sequences
Sobic.010G225100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G333900 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
2 Sobic.006G131400 expressed protein -
3 Sobic.006G179500 protein kinase APK1B, chloroplast precursor, putative, expressed -
4 Sobic.002G359300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ZOS7-07 - C2H2 zinc finger protein, expressed -
5 Sobic.003G300800 GA inactivating enzyme(PubMedID : 24151305)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-regulation in phyB-1 mutant(PubMedID : 26893475)@Expressed in older stem(PubMedID : 28649278)@gibberellin 2-beta-dioxygenase, putative, expressed K04125: gibberellin 2beta-dioxygenase
6 Sobic.002G272900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
7 Sobic.005G103300 dehydrogenase, putative, expressed K18857: alcohol dehydrogenase class-P
8 Sobic.001G516600 AMP-binding domain containing protein, expressed K10526: OPC-8:0 CoA ligase 1
9 Sobic.002G294700 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
10 Sobic.008G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
11 Sobic.006G089300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -
12 Sobic.004G286600 Protecting the plants under varied stress situations(PubMedID : 26536883)@dehydrin, putative, expressed -
13 Sobic.010G228000 Protein kinase domain containing protein, expressed -
14 Sobic.004G280800 Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed K11805: DCAF7, DDB1- and CUL4-associated factor 7
15 Sobic.007G107850 - -
16 Sobic.001G389000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY55, expressed -
17 Sobic.001G119000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
18 Sobic.010G262200 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
19 Sobic.001G206400 fiber protein Fb34, putative, expressed -
20 Sobic.001G424200 protein kinase, putative, expressed -


Gene co-expression network
sample Sobic010G225100 Sobic010G225100 Sobic004G333900 Sobic004G333900 Sobic010G225100--Sobic004G333900 Sobic006G131400 Sobic006G131400 Sobic010G225100--Sobic006G131400 Sobic006G179500 Sobic006G179500 Sobic010G225100--Sobic006G179500 Sobic002G359300 Sobic002G359300 Sobic010G225100--Sobic002G359300 Sobic003G300800 Sobic003G300800 Sobic010G225100--Sobic003G300800 Sobic002G272900 Sobic002G272900 Sobic010G225100--Sobic002G272900 Sobic005G103300 Sobic005G103300 Sobic010G225100--Sobic005G103300 Sobic001G516600 Sobic001G516600 Sobic010G225100--Sobic001G516600 Sobic002G294700 Sobic002G294700 Sobic010G225100--Sobic002G294700 Sobic008G177800 Sobic008G177800 Sobic004G333900--Sobic008G177800 Sobic008G074900 Sobic008G074900 Sobic004G333900--Sobic008G074900 Sobic004G333900--Sobic005G103300 Sobic004G333900--Sobic002G294700 Sobic003G288600 Sobic003G288600 Sobic004G333900--Sobic003G288600 Sobic010G234600 Sobic010G234600 Sobic004G333900--Sobic010G234600 Sobic008G151300 Sobic008G151300 Sobic004G333900--Sobic008G151300 Sobic005G010200 Sobic005G010200 Sobic004G333900--Sobic005G010200 Sobic002G248100 Sobic002G248100 Sobic004G333900--Sobic002G248100 Sobic006G131400--Sobic001G516600 Sobic003G094200 Sobic003G094200 Sobic006G131400--Sobic003G094200 Sobic002G343500 Sobic002G343500 Sobic006G131400--Sobic002G343500 Sobic003G285800 Sobic003G285800 Sobic006G131400--Sobic003G285800 Sobic009G033700 Sobic009G033700 Sobic006G131400--Sobic009G033700 Sobic004G318100 Sobic004G318100 Sobic006G131400--Sobic004G318100 Sobic009G129000 Sobic009G129000 Sobic006G131400--Sobic009G129000 Sobic001G107400 Sobic001G107400 Sobic006G131400--Sobic001G107400 Sobic004G036600 Sobic004G036600 Sobic006G131400--Sobic004G036600 Sobic002G140300 Sobic002G140300 Sobic006G179500--Sobic002G140300 Sobic006G179500--Sobic002G359300 Sobic006G183400 Sobic006G183400 Sobic006G179500--Sobic006G183400 Sobic001G040200 Sobic001G040200 Sobic006G179500--Sobic001G040200 Sobic004G222500 Sobic004G222500 Sobic006G179500--Sobic004G222500 Sobic006G179500--Sobic003G300800 Sobic003G430400 Sobic003G430400 Sobic006G179500--Sobic003G430400 Sobic006G165100 Sobic006G165100 Sobic006G179500--Sobic006G165100 Sobic006G089300 Sobic006G089300 Sobic006G179500--Sobic006G089300 Sobic002G359300--Sobic001G040200 Sobic002G359300--Sobic006G179500 Sobic002G359300--Sobic002G140300 Sobic002G359300--Sobic006G183400 Sobic002G195900 Sobic002G195900 Sobic002G359300--Sobic002G195900 Sobic002G359300--Sobic003G430400 Sobic003G264500 Sobic003G264500 Sobic002G359300--Sobic003G264500 Sobic002G359300--Sobic006G089300 Sobic009G183300 Sobic009G183300 Sobic002G359300--Sobic009G183300 Sobic003G300800--Sobic006G179500 Sobic003G300800--Sobic002G140300 Sobic003G300800--Sobic002G359300 Sobic003G300800--Sobic006G183400 Sobic009G036100 Sobic009G036100 Sobic003G300800--Sobic009G036100 Sobic003G300800--Sobic008G177800 Sobic003G300800--Sobic001G040200 Sobic010G178500 Sobic010G178500 Sobic003G300800--Sobic010G178500 Sobic003G300800--Sobic002G294700 Sobic007G124301 Sobic007G124301 Sobic002G272900--Sobic007G124301 Sobic002G272900--Sobic001G516600 Sobic001G483400 Sobic001G483400 Sobic002G272900--Sobic001G483400 Sobic001G389000 Sobic001G389000 Sobic002G272900--Sobic001G389000 Sobic010G213400 Sobic010G213400 Sobic002G272900--Sobic010G213400 Sobic003G037800 Sobic003G037800 Sobic002G272900--Sobic003G037800 Sobic002G272900--Sobic009G033700 Sobic007G151100 Sobic007G151100 Sobic002G272900--Sobic007G151100 Sobic003G249800 Sobic003G249800 Sobic002G272900--Sobic003G249800 Sobic002G414600 Sobic002G414600 Sobic005G103300--Sobic002G414600 Sobic005G103500 Sobic005G103500 Sobic005G103300--Sobic005G103500 Sobic003G334600 Sobic003G334600 Sobic005G103300--Sobic003G334600 Sobic003G387000 Sobic003G387000 Sobic005G103300--Sobic003G387000 Sobic001G252300 Sobic001G252300 Sobic005G103300--Sobic001G252300 Sobic001G097600 Sobic001G097600 Sobic005G103300--Sobic001G097600 Sobic001G119000 Sobic001G119000 Sobic005G103300--Sobic001G119000 Sobic002G082600 Sobic002G082600 Sobic005G103300--Sobic002G082600 Sobic005G103300--Sobic002G359300 Sobic001G173300 Sobic001G173300 Sobic001G516600--Sobic001G173300 Sobic001G516600--Sobic007G151100 Sobic001G516600--Sobic003G037800 Sobic003G296700 Sobic003G296700 Sobic001G516600--Sobic003G296700 Sobic010G268400 Sobic010G268400 Sobic001G516600--Sobic010G268400 Sobic001G532200 Sobic001G532200 Sobic001G516600--Sobic001G532200 Sobic001G516600--Sobic006G131400 Sobic001G516600--Sobic008G177800 Sobic002G245100 Sobic002G245100 Sobic001G516600--Sobic002G245100 Sobic002G294700--Sobic008G177800 Sobic002G294700--Sobic010G234600 Sobic006G231100 Sobic006G231100 Sobic002G294700--Sobic006G231100 Sobic002G374100 Sobic002G374100 Sobic002G294700--Sobic002G374100 Sobic004G286600 Sobic004G286600 Sobic002G294700--Sobic004G286600 Sobic001G077700 Sobic001G077700 Sobic002G294700--Sobic001G077700 Sobic010G246000 Sobic010G246000 Sobic002G294700--Sobic010G246000 Sobic002G294700--Sobic004G036600 Sobic002G278500 Sobic002G278500 Sobic002G294700--Sobic002G278500
Octagon: transcription factors


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