Gene annotation
Transcriptome id Sobic.010G262200.2,Sobic.010G262200.1
Synonym Sb10g029840, B-box (BBX) protein, STH2, SbBBX23
Functional annotation B-box (BBX) protein (PubMedID : 30626335)
B-box zinc finger family protein, putative, expressed
UniProt C5Z1S6 , A0A194YLK1
Pfam PF00643
Panther DB PTHR31832 PTHR31832:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT1G75540 : salt tolerance homolog2
RAP-DB (Rice) LOC_Os06g49880.1 : B-box zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a041734 , Zm00025a018468
Brachypodium KQK17523 , KQJ83834 , KQJ83833
Barley HORVU2Hr1G092460.9 , HORVU2Hr1G092460.8 , HORVU2Hr1G092460.4 , HORVU2Hr1G092460.3 , HORVU2Hr1G092460.2 , HORVU2Hr1G092460.5 , HORVU2Hr1G092460.20 , HORVU2Hr1G092460.7 , HORVU7Hr1G091180.2 , HORVU7Hr1G091180.3 , HORVU7Hr1G091180.1 , HORVU7Hr1G091180.6 , HORVU7Hr1G091180.4 , HORVU7Hr1G091180.5 , HORVU2Hr1G092460.19 , HORVU2Hr1G092460.18 , HORVU2Hr1G092460.11 , HORVU2Hr1G092460.10 , HORVU2Hr1G092460.13 , HORVU2Hr1G092460.12 , HORVU2Hr1G092460.15 , HORVU2Hr1G092460.14 , HORVU2Hr1G092460.17 , HORVU2Hr1G092460.16
Wheat TraesCS2A02G388500 , TraesCS2A02G388500 , TraesCS7A02G383400 , TraesCS7A02G383400 , TraesCS7A02G383400 , TraesCS2D02G386300 , TraesCS7B02G286300 , TraesCS7B02G286300 , TraesCS7D02G379900 , TraesCS7D02G379900 , TraesCS7B02G286300 , TraesCS2D02G386300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G093000 - -
2 Sobic.002G329000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-ld.3 - DUF26 kinases have homology to DUF26 containing loci, expressed -
3 Sobic.008G151300 expressed protein -
4 Sobic.001G516600 AMP-binding domain containing protein, expressed K10526: OPC-8:0 CoA ligase 1
5 Sobic.001G389000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY55, expressed -
6 Sobic.005G103300 dehydrogenase, putative, expressed K18857: alcohol dehydrogenase class-P
7 Sobic.003G343900 expressed protein -
8 Sobic.002G082600 DUF567 domain containing protein, putative, expressed -
9 Sobic.003G387000 expressed protein -
10 Sobic.005G010200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.003G357100 phosphatidic acid phosphatase-related, putative, expressed -
12 Sobic.002G272900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
13 Sobic.002G202600 joka8, putative, expressed -
14 Sobic.006G131400 expressed protein -
15 Sobic.001G483400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
16 Sobic.006G148000 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.009G186600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.008G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
19 Sobic.003G429000 NADPH quinone oxidoreductase, putative, expressed -
20 Sobic.003G037800 transferase family protein, putative, expressed -


Gene co-expression network
sample Sobic010G262200 Sobic010G262200 Sobic005G093000 Sobic005G093000 Sobic010G262200--Sobic005G093000 Sobic002G329000 Sobic002G329000 Sobic010G262200--Sobic002G329000 Sobic008G151300 Sobic008G151300 Sobic010G262200--Sobic008G151300 Sobic001G516600 Sobic001G516600 Sobic010G262200--Sobic001G516600 Sobic001G389000 Sobic001G389000 Sobic010G262200--Sobic001G389000 Sobic005G103300 Sobic005G103300 Sobic010G262200--Sobic005G103300 Sobic003G343900 Sobic003G343900 Sobic010G262200--Sobic003G343900 Sobic002G082600 Sobic002G082600 Sobic010G262200--Sobic002G082600 Sobic003G387000 Sobic003G387000 Sobic010G262200--Sobic003G387000 Sobic005G093000--Sobic002G329000 Sobic005G093000--Sobic001G389000 Sobic010G136000 Sobic010G136000 Sobic005G093000--Sobic010G136000 Sobic010G195500 Sobic010G195500 Sobic005G093000--Sobic010G195500 Sobic010G268400 Sobic010G268400 Sobic005G093000--Sobic010G268400 Sobic003G429000 Sobic003G429000 Sobic005G093000--Sobic003G429000 Sobic005G018700 Sobic005G018700 Sobic005G093000--Sobic005G018700 Sobic001G500000 Sobic001G500000 Sobic005G093000--Sobic001G500000 Sobic009G074100 Sobic009G074100 Sobic005G093000--Sobic009G074100 Sobic002G329000--Sobic005G093000 Sobic002G329000--Sobic003G429000 Sobic002G329000--Sobic010G268400 Sobic002G329000--Sobic001G389000 Sobic007G155000 Sobic007G155000 Sobic002G329000--Sobic007G155000 Sobic003G417350 Sobic003G417350 Sobic002G329000--Sobic003G417350 Sobic003G037800 Sobic003G037800 Sobic002G329000--Sobic003G037800 Sobic001G050100 Sobic001G050100 Sobic002G329000--Sobic001G050100 Sobic002G329000--Sobic010G195500 Sobic008G177800 Sobic008G177800 Sobic008G151300--Sobic008G177800 Sobic008G151300--Sobic001G516600 Sobic008G151300--Sobic010G262200 Sobic004G333900 Sobic004G333900 Sobic008G151300--Sobic004G333900 Sobic005G010200 Sobic005G010200 Sobic008G151300--Sobic005G010200 Sobic001G513700 Sobic001G513700 Sobic008G151300--Sobic001G513700 Sobic010G234600 Sobic010G234600 Sobic008G151300--Sobic010G234600 Sobic002G272900 Sobic002G272900 Sobic008G151300--Sobic002G272900 Sobic002G294700 Sobic002G294700 Sobic008G151300--Sobic002G294700 Sobic001G173300 Sobic001G173300 Sobic001G516600--Sobic001G173300 Sobic007G151100 Sobic007G151100 Sobic001G516600--Sobic007G151100 Sobic001G516600--Sobic003G037800 Sobic003G296700 Sobic003G296700 Sobic001G516600--Sobic003G296700 Sobic001G516600--Sobic010G268400 Sobic001G532200 Sobic001G532200 Sobic001G516600--Sobic001G532200 Sobic006G131400 Sobic006G131400 Sobic001G516600--Sobic006G131400 Sobic001G516600--Sobic008G177800 Sobic002G245100 Sobic002G245100 Sobic001G516600--Sobic002G245100 Sobic009G159400 Sobic009G159400 Sobic001G389000--Sobic009G159400 Sobic001G389000--Sobic003G037800 Sobic004G101300 Sobic004G101300 Sobic001G389000--Sobic004G101300 Sobic004G340900 Sobic004G340900 Sobic001G389000--Sobic004G340900 Sobic010G259600 Sobic010G259600 Sobic001G389000--Sobic010G259600 Sobic006G092500 Sobic006G092500 Sobic001G389000--Sobic006G092500 Sobic001G139100 Sobic001G139100 Sobic001G389000--Sobic001G139100 Sobic001G038900 Sobic001G038900 Sobic001G389000--Sobic001G038900 Sobic001G389000--Sobic003G429000 Sobic002G414600 Sobic002G414600 Sobic005G103300--Sobic002G414600 Sobic005G103500 Sobic005G103500 Sobic005G103300--Sobic005G103500 Sobic003G334600 Sobic003G334600 Sobic005G103300--Sobic003G334600 Sobic005G103300--Sobic003G387000 Sobic001G252300 Sobic001G252300 Sobic005G103300--Sobic001G252300 Sobic001G097600 Sobic001G097600 Sobic005G103300--Sobic001G097600 Sobic001G119000 Sobic001G119000 Sobic005G103300--Sobic001G119000 Sobic005G103300--Sobic002G082600 Sobic002G359300 Sobic002G359300 Sobic005G103300--Sobic002G359300 Sobic001G494000 Sobic001G494000 Sobic003G343900--Sobic001G494000 Sobic001G009500 Sobic001G009500 Sobic003G343900--Sobic001G009500 Sobic010G252500 Sobic010G252500 Sobic003G343900--Sobic010G252500 Sobic003G343900--Sobic001G389000 Sobic008G106700 Sobic008G106700 Sobic003G343900--Sobic008G106700 Sobic009G179900 Sobic009G179900 Sobic003G343900--Sobic009G179900 Sobic003G343900--Sobic005G093000 Sobic003G343900--Sobic003G429000 Sobic003G343900--Sobic003G417350 Sobic009G036000 Sobic009G036000 Sobic002G082600--Sobic009G036000 Sobic009G036100 Sobic009G036100 Sobic002G082600--Sobic009G036100 Sobic002G082600--Sobic009G159400 Sobic001G320900 Sobic001G320900 Sobic002G082600--Sobic001G320900 Sobic004G065500 Sobic004G065500 Sobic002G082600--Sobic004G065500 Sobic002G082600--Sobic003G387000 Sobic001G407800 Sobic001G407800 Sobic002G082600--Sobic001G407800 Sobic002G082600--Sobic003G334600 Sobic010G086200 Sobic010G086200 Sobic002G082600--Sobic010G086200 Sobic003G387000--Sobic003G334600 Sobic004G280200 Sobic004G280200 Sobic003G387000--Sobic004G280200 Sobic001G405500 Sobic001G405500 Sobic003G387000--Sobic001G405500 Sobic009G183300 Sobic009G183300 Sobic003G387000--Sobic009G183300 Sobic003G387000--Sobic001G320900 Sobic009G141800 Sobic009G141800 Sobic003G387000--Sobic009G141800 Sobic003G387000--Sobic005G103300 Sobic003G393900 Sobic003G393900 Sobic003G387000--Sobic003G393900 Sobic003G369100 Sobic003G369100 Sobic003G387000--Sobic003G369100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.