Gene annotation
| Transcriptome id | Sobic.002G119800.1 |
|---|---|
| Synonym | emb1027 |
| Functional annotation | arginyl-tRNA synthetase, putative, expressed |
| UniProt | A0A1B6QAP4 |
| Pfam | PF00750 |
| Panther DB | - |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0006420; arginyl-tRNA aminoacylation GO:0005524ATP binding GO:0004814arginine-tRNA ligase activity |
Orthologs (automatic annotation)
| TAIR | AT4G26300 : Arginyl-tRNA synthetase, class Ic |
|---|---|
| RAP-DB (Rice) | LOC_Os01g06510.1 : arginyl-tRNA synthetase, putative, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G332000 | alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, putative, expressed | K00736: alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase |
| 2 | Sobic.009G059700 | thioredoxin, putative, expressed | K03671: thioredoxin 1 |
| 3 | Sobic.006G213601 | - | - |
| 4 | Sobic.008G016900 | glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed | K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing) |
| 5 | Sobic.001G162100 | WRKY94, expressed | - |
| 6 | Sobic.009G230700 | Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed | - |
| 7 | Sobic.009G134600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed | K14493: gibberellin receptor GID1 |
| 8 | Sobic.007G011000 | synaptobrevin-related family protein, putative, expressed | - |
| 9 | Sobic.004G145200 | membrane attack complex component/perforin/complement C9, putative, expressed | - |
| 10 | Sobic.006G225600 | protein phosphatase 2C, putative, expressed | K17506: PPM1L, protein phosphatase 1L |
| 11 | Sobic.010G062800 | transporter, major facilitator family, putative, expressed | K13783: MFS transporter, OPA family, solute carrier family 37 (glycerol-3-phosphate transporter), member 1/2 |
| 12 | Sobic.004G183400 | expressed protein | - |
| 13 | Sobic.002G330300 | chitin-inducible gibberellin-responsive protein, putative, expressed | - |
| 14 | Sobic.001G045000 | CAMK_CAMK_like.24 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K13412: calcium-dependent protein kinase |
| 15 | Sobic.001G164350 | - | - |
| 16 | Sobic.004G173500 | CAMK_CAMK_like.13 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K14498: serine/threonine-protein kinase SRK2 |
| 17 | Sobic.004G280800 | Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed | K11805: DCAF7, DDB1- and CUL4-associated factor 7 |
| 18 | Sobic.003G424400 | Spotted leaf protein(PubMedID : 24906815)@armadillo repeat-containing protein, putative, expressed | K08332: vacuolar protein 8 |
| 19 | Sobic.002G292600 | phytoene synthase(PubMedID : 22672222)@carotenoid biosynthesi(PubMedID : 18162592)@PSY3 expression influences root carotenogenesis and defines a potential bottleneck upstream of NCED(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed | K02291: 15-cis-phytoene synthase |
| 20 | Sobic.001G434900 | serine palmitoyltransferase 1, putative, expressed | K00654: serine palmitoyltransferase |
Gene co-expression network
Octagon: transcription factors
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