Gene annotation
| Transcriptome id | Sobic.003G424400.1 |
|---|---|
| Synonym | Sb03g045700 |
| Functional annotation | Spotted leaf protein (PubMedID : 24906815) armadillo repeat-containing protein, putative, expressed |
| UniProt | A0A1B6Q882 |
| Pfam | PF00514 |
| Panther DB | PTHR23315 PTHR23315:SF133 |
| NCBI CDD | KOG0166; Karyopherin (importin) alpha |
| KEGG Orthology | K08332; vacuolar protein 8 |
| Gene Ontology | GO:0005515; protein binding |
Orthologs (automatic annotation)
| TAIR | AT1G76390 : ARM repeat superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g72000.1 : armadillo repeat-containing protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a026014 |
| Brachypodium | - |
| Barley | HORVU3Hr1G106700.8 , HORVU3Hr1G106700.9 , HORVU3Hr1G106700.3 , HORVU3Hr1G106700.2 , HORVU3Hr1G106700.1 , HORVU3Hr1G106700.7 , HORVU3Hr1G106700.6 , HORVU3Hr1G106700.5 , HORVU3Hr1G106700.4 |
| Wheat | TraesCS3B02G537800 , TraesCS3D02G483600 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G119800 | Expressed in older stem(PubMedID : 28649278)@no apical meristem protein, putative, expressed | - |
| 2 | Sobic.009G230700 | Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed | - |
| 3 | Sobic.001G420700 | clathrin assembly protein, putative, expressed | - |
| 4 | Sobic.009G195300 | DUF803 domain containing, putative, expressed | - |
| 5 | Sobic.009G134600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed | K14493: gibberellin receptor GID1 |
| 6 | Sobic.008G189400 | NBS-LRR disease resistance protein, putative, expressed | - |
| 7 | Sobic.007G136700 | YGL010w, putative, expressed | - |
| 8 | Sobic.006G025300 | white-brown complex homolog protein, putative, expressed | - |
| 9 | Sobic.007G178200 | ER lumen protein retaining receptor, putative, expressed | - |
| 10 | Sobic.005G046100 | bZIP transcription factor domain containing protein, expressed | - |
| 11 | Sobic.008G016900 | glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed | K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing) |
| 12 | Sobic.002G119800 | arginyl-tRNA synthetase, putative, expressed | - |
| 13 | Sobic.003G422700 | amino acid permease family protein, putative, expressed | - |
| 14 | Sobic.002G134600 | nucleic acid binding protein, putative, expressed | - |
| 15 | Sobic.010G068500 | cyclic nucleotide-gated ion channel 14, putative, expressed | K05391: cyclic nucleotide gated channel, plant |
| 16 | Sobic.001G162100 | WRKY94, expressed | - |
| 17 | Sobic.004G347900 | protein kinase APK1A, chloroplast precursor, putative, expressed | - |
| 18 | Sobic.003G361500 | zinc finger family protein, putative, expressed | - |
| 19 | Sobic.001G161200 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | - |
| 20 | Sobic.008G065800 | - | - |
Gene co-expression network
Octagon: transcription factors
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