Gene annotation
Transcriptome id Sobic.004G347900.2
Synonym Sb04g037460
Functional annotation protein kinase APK1A, chloroplast precursor, putative, expressed
UniProt C5XVY8
Pfam PF07714
Panther DB PTHR27001 PTHR27001:SF29
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT3G09830 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os02g57420.1 : protein kinase APK1A, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a022623 , Zm00025a032782 , Zm00025a024418
Brachypodium -
Barley -
Wheat TraesCS2D02G052900
Populus -


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cDNA sequences
Sobic.004G347900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G195300 DUF803 domain containing, putative, expressed -
2 Sobic.003G317200 vacuolar protein sorting-associated protein 28 homolog 2, putative, expressed K12184: ESCRT-I complex subunit VPS28
3 Sobic.001G420700 clathrin assembly protein, putative, expressed -
4 Sobic.002G272600 TBC domain containing protein, expressed -
5 Sobic.009G230700 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
6 Sobic.003G119800 Expressed in older stem(PubMedID : 28649278)@no apical meristem protein, putative, expressed -
7 Sobic.008G142700 expressed protein -
8 Sobic.003G361500 zinc finger family protein, putative, expressed -
9 Sobic.001G441600 potyvirus VPg interacting protein, putative, expressed -
10 Sobic.003G052400 proline-rich family protein, putative, expressed -
11 Sobic.006G109300 protein binding protein, putative, expressed -
12 Sobic.009G050700 importin subunit alpha, putative, expressed -
13 Sobic.010G017000 RNA recognition motif containing protein, putative, expressed -
14 Sobic.002G131900 expressed protein -
15 Sobic.008G046600 bZIP transcription factor domain containing protein, expressed -
16 Sobic.005G010500 expressed protein -
17 Sobic.010G012600 expressed protein -
18 Sobic.007G205000 zinc finger family protein, putative, expressed -
19 Sobic.004G301900 potyvirus VPg interacting protein, putative, expressed -
20 Sobic.003G405700 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7


Gene co-expression network
sample Sobic004G347900 Sobic004G347900 Sobic009G195300 Sobic009G195300 Sobic004G347900--Sobic009G195300 Sobic003G317200 Sobic003G317200 Sobic004G347900--Sobic003G317200 Sobic001G420700 Sobic001G420700 Sobic004G347900--Sobic001G420700 Sobic002G272600 Sobic002G272600 Sobic004G347900--Sobic002G272600 Sobic009G230700 Sobic009G230700 Sobic004G347900--Sobic009G230700 Sobic003G119800 Sobic003G119800 Sobic004G347900--Sobic003G119800 Sobic008G142700 Sobic008G142700 Sobic004G347900--Sobic008G142700 Sobic003G361500 Sobic003G361500 Sobic004G347900--Sobic003G361500 Sobic001G441600 Sobic001G441600 Sobic004G347900--Sobic001G441600 Sobic009G195300--Sobic003G119800 Sobic009G195300--Sobic004G347900 Sobic008G189400 Sobic008G189400 Sobic009G195300--Sobic008G189400 Sobic003G424400 Sobic003G424400 Sobic009G195300--Sobic003G424400 Sobic006G025300 Sobic006G025300 Sobic009G195300--Sobic006G025300 Sobic007G006900 Sobic007G006900 Sobic009G195300--Sobic007G006900 Sobic002G134600 Sobic002G134600 Sobic009G195300--Sobic002G134600 Sobic009G195300--Sobic003G361500 Sobic008G139700 Sobic008G139700 Sobic009G195300--Sobic008G139700 Sobic010G055500 Sobic010G055500 Sobic003G317200--Sobic010G055500 Sobic010G071200 Sobic010G071200 Sobic003G317200--Sobic010G071200 Sobic006G109300 Sobic006G109300 Sobic003G317200--Sobic006G109300 Sobic003G317200--Sobic008G142700 Sobic001G206000 Sobic001G206000 Sobic003G317200--Sobic001G206000 Sobic003G317200--Sobic001G441600 Sobic004G231400 Sobic004G231400 Sobic003G317200--Sobic004G231400 Sobic001G149700 Sobic001G149700 Sobic003G317200--Sobic001G149700 Sobic001G138300 Sobic001G138300 Sobic003G317200--Sobic001G138300 Sobic005G046100 Sobic005G046100 Sobic001G420700--Sobic005G046100 Sobic008G188700 Sobic008G188700 Sobic001G420700--Sobic008G188700 Sobic007G136700 Sobic007G136700 Sobic001G420700--Sobic007G136700 Sobic001G420700--Sobic001G441600 Sobic003G116700 Sobic003G116700 Sobic001G420700--Sobic003G116700 Sobic004G150400 Sobic004G150400 Sobic001G420700--Sobic004G150400 Sobic001G420700--Sobic003G424400 Sobic001G420700--Sobic003G317200 Sobic001G069800 Sobic001G069800 Sobic001G420700--Sobic001G069800 Sobic001G061700 Sobic001G061700 Sobic002G272600--Sobic001G061700 Sobic001G080000 Sobic001G080000 Sobic002G272600--Sobic001G080000 Sobic001G143500 Sobic001G143500 Sobic002G272600--Sobic001G143500 Sobic003G405700 Sobic003G405700 Sobic002G272600--Sobic003G405700 Sobic010G105600 Sobic010G105600 Sobic002G272600--Sobic010G105600 Sobic007G205000 Sobic007G205000 Sobic002G272600--Sobic007G205000 Sobic003G038600 Sobic003G038600 Sobic002G272600--Sobic003G038600 Sobic003G350600 Sobic003G350600 Sobic002G272600--Sobic003G350600 Sobic010G219100 Sobic010G219100 Sobic002G272600--Sobic010G219100 Sobic009G134600 Sobic009G134600 Sobic009G230700--Sobic009G134600 Sobic009G230700--Sobic003G119800 Sobic009G230700--Sobic003G424400 Sobic009G230700--Sobic003G317200 Sobic002G330300 Sobic002G330300 Sobic009G230700--Sobic002G330300 Sobic009G230700--Sobic004G347900 Sobic003G056500 Sobic003G056500 Sobic009G230700--Sobic003G056500 Sobic009G230700--Sobic005G046100 Sobic002G119800 Sobic002G119800 Sobic009G230700--Sobic002G119800 Sobic003G119800--Sobic009G134600 Sobic003G119800--Sobic008G189400 Sobic001G290200 Sobic001G290200 Sobic003G119800--Sobic001G290200 Sobic003G119800--Sobic009G195300 Sobic004G031600 Sobic004G031600 Sobic003G119800--Sobic004G031600 Sobic001G463000 Sobic001G463000 Sobic003G119800--Sobic001G463000 Sobic001G472600 Sobic001G472600 Sobic003G119800--Sobic001G472600 Sobic003G119800--Sobic009G230700 Sobic009G167600 Sobic009G167600 Sobic003G119800--Sobic009G167600 Sobic008G142700--Sobic010G071200 Sobic001G512900 Sobic001G512900 Sobic008G142700--Sobic001G512900 Sobic008G142700--Sobic010G055500 Sobic008G142700--Sobic001G149700 Sobic007G063200 Sobic007G063200 Sobic008G142700--Sobic007G063200 Sobic008G142700--Sobic003G350600 Sobic008G142700--Sobic006G109300 Sobic009G246950 Sobic009G246950 Sobic008G142700--Sobic009G246950 Sobic001G478300 Sobic001G478300 Sobic008G142700--Sobic001G478300 Sobic008G046600 Sobic008G046600 Sobic003G361500--Sobic008G046600 Sobic003G361500--Sobic006G109300 Sobic001G294700 Sobic001G294700 Sobic003G361500--Sobic001G294700 Sobic004G319300 Sobic004G319300 Sobic003G361500--Sobic004G319300 Sobic009G252800 Sobic009G252800 Sobic003G361500--Sobic009G252800 Sobic004G059000 Sobic004G059000 Sobic003G361500--Sobic004G059000 Sobic007G152101 Sobic007G152101 Sobic003G361500--Sobic007G152101 Sobic003G361500--Sobic008G142700 Sobic006G207500 Sobic006G207500 Sobic003G361500--Sobic006G207500 Sobic001G441600--Sobic003G116700 Sobic008G161000 Sobic008G161000 Sobic001G441600--Sobic008G161000 Sobic001G335400 Sobic001G335400 Sobic001G441600--Sobic001G335400 Sobic009G016201 Sobic009G016201 Sobic001G441600--Sobic009G016201 Sobic003G396000 Sobic003G396000 Sobic001G441600--Sobic003G396000 Sobic009G152200 Sobic009G152200 Sobic001G441600--Sobic009G152200 Sobic003G115800 Sobic003G115800 Sobic001G441600--Sobic003G115800 Sobic001G441600--Sobic010G071200 Sobic001G441600--Sobic003G317200
Octagon: transcription factors


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