Gene annotation
Transcriptome id Sobic.003G275100.1
Synonym RTE1, Sb03g032700
Functional annotation green ripe-like, putative, expressed
UniProt C5XI84
Pfam PF05608
Panther DB PTHR20921 PTHR20921:SF0
NCBI CDD KOG3150; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G26070 : Protein of unknown function (DUF778)
RAP-DB (Rice) LOC_Os01g51430.1 : green ripe-like, putative, expressed
MaizeGDB (Corn) Zm00025a038943 , Zm00025a027809
Brachypodium PNT72698 , KQK09440
Barley -
Wheat TraesCS3A02G250100 , TraesCS3B02G279600 , TraesCS3D02G250500 , TraesCS3D02G250500
Populus -


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cDNA sequences
Sobic.003G275100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G186200 OsFBL30 - F-box domain and LRR containing protein, expressed K14515: EIN3-binding F-box protein
2 Sobic.004G293700 peroxisomal biogenesis factor 19, putative, expressed K13337: peroxin-19
3 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
4 Sobic.002G264400 metallo-beta-lactamase family protein, putative, expressed K01069: gloB, gloC, hydroxyacylglutathione hydrolase
5 Sobic.001G124600 - -
6 Sobic.002G202300 vesicle transport v-SNARE protein, putative, expressed K08495: GOSR1, golgi SNAP receptor complex member 1
7 Sobic.002G180600 expressed protein K17968: TRIAP1, TRIAP1/MDM35 family protein
8 Sobic.010G243200 ZOS6-08 - C2H2 zinc finger protein, expressed K14816: pre-60S factor REI1
9 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
10 Sobic.006G141500 expressed protein -
11 Sobic.001G329100 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
12 Sobic.005G195100 expressed protein -
13 Sobic.009G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
14 Sobic.006G106800 - -
15 Sobic.002G282400 expressed protein -
16 Sobic.001G415500 zinc finger, C3HC4 type domain containing protein, expressed K13125: nitric oxide synthase-interacting protein
17 Sobic.004G049900 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
18 Sobic.003G130800 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
19 Sobic.003G181500 ZOS1-09 - C2H2 zinc finger protein, expressed -
20 Sobic.008G033600 Pyruvate kinase family protein(PubMedID : 26465154)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase


Gene co-expression network
sample Sobic003G275100 Sobic003G275100 Sobic010G186200 Sobic010G186200 Sobic003G275100--Sobic010G186200 Sobic004G293700 Sobic004G293700 Sobic003G275100--Sobic004G293700 Sobic003G253000 Sobic003G253000 Sobic003G275100--Sobic003G253000 Sobic002G264400 Sobic002G264400 Sobic003G275100--Sobic002G264400 Sobic001G124600 Sobic001G124600 Sobic003G275100--Sobic001G124600 Sobic002G202300 Sobic002G202300 Sobic003G275100--Sobic002G202300 Sobic002G180600 Sobic002G180600 Sobic003G275100--Sobic002G180600 Sobic010G243200 Sobic010G243200 Sobic003G275100--Sobic010G243200 Sobic003G220600 Sobic003G220600 Sobic003G275100--Sobic003G220600 Sobic001G477600 Sobic001G477600 Sobic010G186200--Sobic001G477600 Sobic002G345300 Sobic002G345300 Sobic010G186200--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic010G186200--Sobic002G046100 Sobic003G393700 Sobic003G393700 Sobic010G186200--Sobic003G393700 Sobic003G350300 Sobic003G350300 Sobic010G186200--Sobic003G350300 Sobic001G281400 Sobic001G281400 Sobic010G186200--Sobic001G281400 Sobic009G139400 Sobic009G139400 Sobic010G186200--Sobic009G139400 Sobic004G187900 Sobic004G187900 Sobic010G186200--Sobic004G187900 Sobic010G186200--Sobic001G124600 Sobic010G253800 Sobic010G253800 Sobic004G293700--Sobic010G253800 Sobic004G079100 Sobic004G079100 Sobic004G293700--Sobic004G079100 Sobic010G083700 Sobic010G083700 Sobic004G293700--Sobic010G083700 Sobic001G054200 Sobic001G054200 Sobic004G293700--Sobic001G054200 Sobic004G248800 Sobic004G248800 Sobic004G293700--Sobic004G248800 Sobic009G171700 Sobic009G171700 Sobic004G293700--Sobic009G171700 Sobic004G293700--Sobic002G264400 Sobic006G141500 Sobic006G141500 Sobic004G293700--Sobic006G141500 Sobic004G293700--Sobic003G220600 Sobic003G253000--Sobic006G141500 Sobic004G049900 Sobic004G049900 Sobic003G253000--Sobic004G049900 Sobic002G267500 Sobic002G267500 Sobic003G253000--Sobic002G267500 Sobic004G272800 Sobic004G272800 Sobic003G253000--Sobic004G272800 Sobic001G459200 Sobic001G459200 Sobic003G253000--Sobic001G459200 Sobic003G253000--Sobic002G345300 Sobic003G253000--Sobic002G046100 Sobic009G185800 Sobic009G185800 Sobic003G253000--Sobic009G185800 Sobic006G108400 Sobic006G108400 Sobic003G253000--Sobic006G108400 Sobic006G264300 Sobic006G264300 Sobic002G264400--Sobic006G264300 Sobic002G264400--Sobic004G293700 Sobic002G264400--Sobic002G267500 Sobic002G264400--Sobic002G180600 Sobic002G264400--Sobic003G253000 Sobic002G264400--Sobic002G202300 Sobic002G264400--Sobic010G253800 Sobic005G034400 Sobic005G034400 Sobic002G264400--Sobic005G034400 Sobic003G075500 Sobic003G075500 Sobic002G264400--Sobic003G075500 Sobic001G124600--Sobic004G187900 Sobic001G477300 Sobic001G477300 Sobic001G124600--Sobic001G477300 Sobic002G393000 Sobic002G393000 Sobic001G124600--Sobic002G393000 Sobic001G038900 Sobic001G038900 Sobic001G124600--Sobic001G038900 Sobic009G008900 Sobic009G008900 Sobic001G124600--Sobic009G008900 Sobic002G140400 Sobic002G140400 Sobic001G124600--Sobic002G140400 Sobic009G141800 Sobic009G141800 Sobic001G124600--Sobic009G141800 Sobic001G119400 Sobic001G119400 Sobic001G124600--Sobic001G119400 Sobic010G086200 Sobic010G086200 Sobic001G124600--Sobic010G086200 Sobic002G202300--Sobic003G253000 Sobic002G202300--Sobic003G220600 Sobic002G202300--Sobic006G141500 Sobic002G202300--Sobic006G264300 Sobic002G202300--Sobic002G046100 Sobic003G115800 Sobic003G115800 Sobic002G202300--Sobic003G115800 Sobic010G204300 Sobic010G204300 Sobic002G202300--Sobic010G204300 Sobic006G062800 Sobic006G062800 Sobic002G202300--Sobic006G062800 Sobic006G182100 Sobic006G182100 Sobic002G202300--Sobic006G182100 Sobic002G180600--Sobic002G264400 Sobic002G180600--Sobic006G264300 Sobic002G282400 Sobic002G282400 Sobic002G180600--Sobic002G282400 Sobic002G180600--Sobic010G253800 Sobic002G180600--Sobic006G141500 Sobic002G249000 Sobic002G249000 Sobic002G180600--Sobic002G249000 Sobic003G333400 Sobic003G333400 Sobic002G180600--Sobic003G333400 Sobic001G329100 Sobic001G329100 Sobic002G180600--Sobic001G329100 Sobic010G071900 Sobic010G071900 Sobic002G180600--Sobic010G071900 Sobic010G243200--Sobic006G141500 Sobic010G243200--Sobic002G282400 Sobic002G218000 Sobic002G218000 Sobic010G243200--Sobic002G218000 Sobic010G243200--Sobic003G350300 Sobic003G321700 Sobic003G321700 Sobic010G243200--Sobic003G321700 Sobic001G177800 Sobic001G177800 Sobic010G243200--Sobic001G177800 Sobic003G181500 Sobic003G181500 Sobic010G243200--Sobic003G181500 Sobic001G288800 Sobic001G288800 Sobic010G243200--Sobic001G288800 Sobic002G187500 Sobic002G187500 Sobic010G243200--Sobic002G187500 Sobic003G248600 Sobic003G248600 Sobic003G220600--Sobic003G248600 Sobic003G220600--Sobic002G202300 Sobic003G220600--Sobic003G253000 Sobic003G220600--Sobic003G115800 Sobic007G059900 Sobic007G059900 Sobic003G220600--Sobic007G059900 Sobic003G220600--Sobic004G293700 Sobic004G300900 Sobic004G300900 Sobic003G220600--Sobic004G300900 Sobic003G367451 Sobic003G367451 Sobic003G220600--Sobic003G367451 Sobic009G146100 Sobic009G146100 Sobic003G220600--Sobic009G146100
Octagon: transcription factors


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