Gene annotation
Transcriptome id Sobic.003G340700.1
Synonym SDH5, Sb03g038460
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
expressed protein
UniProt C5XNW0
Pfam PF14290
Panther DB PTHR36139 PTHR36139:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G47420 : succinate dehydrogenase 5
RAP-DB (Rice) LOC_Os04g34100.1 : expressed protein
MaizeGDB (Corn) Zm00025a007655 , Zm00025a017090
Brachypodium KQJ82575 , KQK19734
Barley HORVU7Hr1G012370.1 , HORVU7Hr1G012370.2 , HORVU7Hr1G012370.3 , HORVU7Hr1G012370.4 , HORVU7Hr1G012370.5 , HORVU7Hr1G012370.6 , HORVU7Hr1G012370.7
Wheat TraesCS2A02G298400 , TraesCS2D02G296500 , TraesCS4A02G418100 , TraesCS2B02G314900
Populus -


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cDNA sequences
Sobic.003G340700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G159000 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
2 Sobic.004G030000 mitochondrial ATP synthase precursor, putative, expressed -
3 Sobic.003G196600 expressed protein -
4 Sobic.001G031900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
5 Sobic.003G152900 -(PubMedID : 26976818)@dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
6 Sobic.004G170400 ubiquinol-cytochrome C reductase hinge protein, putative, expressed K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6
7 Sobic.001G350600 cytochrome c oxidase subunit, putative, expressed K02267: cytochrome c oxidase subunit 6b
8 Sobic.008G102600 expressed protein -
9 Sobic.009G112900 expressed protein K18170: LYRM7, complex III assembly factor LYRM7
10 Sobic.010G007400 peptidase, T1 family, putative, expressed K02739: 20S proteasome subunit beta 2
11 Sobic.007G150000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
12 Sobic.002G090700 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
13 Sobic.004G222600 expressed protein -
14 Sobic.001G465800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
15 Sobic.007G013900 rickettsia 17 kDa surface antigen family protein, expressed -
16 Sobic.004G259200 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
17 Sobic.004G286100 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
18 Sobic.001G342200 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
19 Sobic.001G443200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
20 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9


Gene co-expression network
sample Sobic003G340700 Sobic003G340700 Sobic004G159000 Sobic004G159000 Sobic003G340700--Sobic004G159000 Sobic004G030000 Sobic004G030000 Sobic003G340700--Sobic004G030000 Sobic003G196600 Sobic003G196600 Sobic003G340700--Sobic003G196600 Sobic001G031900 Sobic001G031900 Sobic003G340700--Sobic001G031900 Sobic003G152900 Sobic003G152900 Sobic003G340700--Sobic003G152900 Sobic004G170400 Sobic004G170400 Sobic003G340700--Sobic004G170400 Sobic001G350600 Sobic001G350600 Sobic003G340700--Sobic001G350600 Sobic008G102600 Sobic008G102600 Sobic003G340700--Sobic008G102600 Sobic009G112900 Sobic009G112900 Sobic003G340700--Sobic009G112900 Sobic007G013900 Sobic007G013900 Sobic004G159000--Sobic007G013900 Sobic004G344800 Sobic004G344800 Sobic004G159000--Sobic004G344800 Sobic002G262200 Sobic002G262200 Sobic004G159000--Sobic002G262200 Sobic004G159000--Sobic004G030000 Sobic004G159000--Sobic003G196600 Sobic002G090700 Sobic002G090700 Sobic004G159000--Sobic002G090700 Sobic004G159000--Sobic003G152900 Sobic002G260200 Sobic002G260200 Sobic004G159000--Sobic002G260200 Sobic010G007400 Sobic010G007400 Sobic004G159000--Sobic010G007400 Sobic004G030000--Sobic003G152900 Sobic004G030000--Sobic001G350600 Sobic001G465800 Sobic001G465800 Sobic004G030000--Sobic001G465800 Sobic002G309700 Sobic002G309700 Sobic004G030000--Sobic002G309700 Sobic001G074700 Sobic001G074700 Sobic004G030000--Sobic001G074700 Sobic004G030000--Sobic004G170400 Sobic004G030000--Sobic010G007400 Sobic004G030000--Sobic004G344800 Sobic004G030000--Sobic004G159000 Sobic003G196600--Sobic004G159000 Sobic004G256700 Sobic004G256700 Sobic003G196600--Sobic004G256700 Sobic003G196600--Sobic003G340700 Sobic003G196600--Sobic009G112900 Sobic003G196600--Sobic004G030000 Sobic004G039400 Sobic004G039400 Sobic003G196600--Sobic004G039400 Sobic001G518500 Sobic001G518500 Sobic003G196600--Sobic001G518500 Sobic005G019100 Sobic005G019100 Sobic003G196600--Sobic005G019100 Sobic008G175100 Sobic008G175100 Sobic003G196600--Sobic008G175100 Sobic006G058900 Sobic006G058900 Sobic001G031900--Sobic006G058900 Sobic004G202100 Sobic004G202100 Sobic001G031900--Sobic004G202100 Sobic002G395000 Sobic002G395000 Sobic001G031900--Sobic002G395000 Sobic001G031900--Sobic001G350600 Sobic001G031900--Sobic004G344800 Sobic001G031900--Sobic003G152900 Sobic001G031900--Sobic004G170400 Sobic001G458800 Sobic001G458800 Sobic001G031900--Sobic001G458800 Sobic001G031900--Sobic004G030000 Sobic003G152900--Sobic004G030000 Sobic003G152900--Sobic001G074700 Sobic003G152900--Sobic004G170400 Sobic003G152900--Sobic001G350600 Sobic010G154700 Sobic010G154700 Sobic003G152900--Sobic010G154700 Sobic003G152900--Sobic001G031900 Sobic003G152900--Sobic002G090700 Sobic003G152900--Sobic004G159000 Sobic004G066800 Sobic004G066800 Sobic003G152900--Sobic004G066800 Sobic004G170400--Sobic001G350600 Sobic004G259200 Sobic004G259200 Sobic004G170400--Sobic004G259200 Sobic004G170400--Sobic001G074700 Sobic004G170400--Sobic001G465800 Sobic009G119900 Sobic009G119900 Sobic004G170400--Sobic009G119900 Sobic002G356400 Sobic002G356400 Sobic004G170400--Sobic002G356400 Sobic003G209000 Sobic003G209000 Sobic004G170400--Sobic003G209000 Sobic004G310300 Sobic004G310300 Sobic004G170400--Sobic004G310300 Sobic002G418400 Sobic002G418400 Sobic004G170400--Sobic002G418400 Sobic001G350600--Sobic004G170400 Sobic001G350600--Sobic004G259200 Sobic001G350600--Sobic002G356400 Sobic001G350600--Sobic001G074700 Sobic001G350600--Sobic001G465800 Sobic001G350600--Sobic003G209000 Sobic001G404800 Sobic001G404800 Sobic001G350600--Sobic001G404800 Sobic001G350600--Sobic009G119900 Sobic001G350600--Sobic004G030000 Sobic001G443200 Sobic001G443200 Sobic008G102600--Sobic001G443200 Sobic008G102600--Sobic009G112900 Sobic003G196200 Sobic003G196200 Sobic008G102600--Sobic003G196200 Sobic004G000100 Sobic004G000100 Sobic008G102600--Sobic004G000100 Sobic004G045300 Sobic004G045300 Sobic008G102600--Sobic004G045300 Sobic008G110500 Sobic008G110500 Sobic008G102600--Sobic008G110500 Sobic001G387800 Sobic001G387800 Sobic008G102600--Sobic001G387800 Sobic001G112400 Sobic001G112400 Sobic008G102600--Sobic001G112400 Sobic008G102600--Sobic004G039400 Sobic009G112900--Sobic008G102600 Sobic009G112900--Sobic001G518500 Sobic001G060300 Sobic001G060300 Sobic009G112900--Sobic001G060300 Sobic009G112900--Sobic002G262200 Sobic009G112900--Sobic008G175100 Sobic009G112900--Sobic004G159000 Sobic009G112900--Sobic003G196600 Sobic001G342200 Sobic001G342200 Sobic009G112900--Sobic001G342200 Sobic009G112900--Sobic010G007400
Octagon: transcription factors


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