Gene annotation
Transcriptome id Sobic.004G033500.1
Synonym Sb04g002890
Functional annotation expressed protein
UniProt C5XTY0
Pfam PF00112
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os04g48710.2 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G130000 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
2 Sobic.002G027800 mitochondrial 60S ribosomal protein L5, putative, expressed -
3 Sobic.002G000300 RNA polymerase subunit, putative, expressed K03008: RPB11, DNA-directed RNA polymerase II subunit RPB11
4 Sobic.003G196200 elongation factor TS family protein, expressed -
5 Sobic.004G186100 expressed protein -
6 Sobic.003G118400 expressed protein -
7 Sobic.008G110500 UDP-N-acetylglucosamine transferase subunit ALG13, putative, expressed K07432: beta-1,4-N-acetylglucosaminyltransferase
8 Sobic.003G205400 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
9 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
10 Sobic.003G113400 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
11 Sobic.009G169200 outer membrane protein, OMP85 family protein, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
12 Sobic.001G413100 nucleotide binding protein, putative, expressed -
13 Sobic.001G167500 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
14 Sobic.009G219400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
15 Sobic.009G206600 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
16 Sobic.008G102600 expressed protein -
17 Sobic.004G272400 AAA-type ATPase family protein, putative, expressed K17681: ATPase family AAA domain-containing protein 3A/B
18 Sobic.001G471000 RNase L inhibitor protein-related, putative, expressed K09140: pre-rRNA-processing protein TSR3
19 Sobic.007G191600 exosome complex exonuclease, putative, expressed K12586: RRP43, EXOSC8, exosome complex component RRP43
20 Sobic.003G222700 similar to DEAD-box ATP-dependent RNA helicase 26(PubMedID : 29862293)@- K17679: ATP-dependent RNA helicase MSS116, mitochondrial


Gene co-expression network
sample Sobic004G033500 Sobic004G033500 Sobic003G130000 Sobic003G130000 Sobic004G033500--Sobic003G130000 Sobic002G027800 Sobic002G027800 Sobic004G033500--Sobic002G027800 Sobic002G000300 Sobic002G000300 Sobic004G033500--Sobic002G000300 Sobic003G196200 Sobic003G196200 Sobic004G033500--Sobic003G196200 Sobic004G186100 Sobic004G186100 Sobic004G033500--Sobic004G186100 Sobic003G118400 Sobic003G118400 Sobic004G033500--Sobic003G118400 Sobic008G110500 Sobic008G110500 Sobic004G033500--Sobic008G110500 Sobic003G205400 Sobic003G205400 Sobic004G033500--Sobic003G205400 Sobic009G041800 Sobic009G041800 Sobic004G033500--Sobic009G041800 Sobic003G130000--Sobic009G041800 Sobic001G167500 Sobic001G167500 Sobic003G130000--Sobic001G167500 Sobic003G235700 Sobic003G235700 Sobic003G130000--Sobic003G235700 Sobic010G134100 Sobic010G134100 Sobic003G130000--Sobic010G134100 Sobic006G251600 Sobic006G251600 Sobic003G130000--Sobic006G251600 Sobic003G130000--Sobic003G205400 Sobic003G008600 Sobic003G008600 Sobic003G130000--Sobic003G008600 Sobic005G098000 Sobic005G098000 Sobic003G130000--Sobic005G098000 Sobic001G268300 Sobic001G268300 Sobic003G130000--Sobic001G268300 Sobic003G148900 Sobic003G148900 Sobic002G027800--Sobic003G148900 Sobic007G012900 Sobic007G012900 Sobic002G027800--Sobic007G012900 Sobic002G027800--Sobic008G110500 Sobic008G102600 Sobic008G102600 Sobic002G027800--Sobic008G102600 Sobic010G040900 Sobic010G040900 Sobic002G027800--Sobic010G040900 Sobic003G200600 Sobic003G200600 Sobic002G027800--Sobic003G200600 Sobic002G027800--Sobic003G196200 Sobic001G387800 Sobic001G387800 Sobic002G027800--Sobic001G387800 Sobic001G421400 Sobic001G421400 Sobic002G027800--Sobic001G421400 Sobic002G000300--Sobic003G118400 Sobic005G120700 Sobic005G120700 Sobic002G000300--Sobic005G120700 Sobic002G144275 Sobic002G144275 Sobic002G000300--Sobic002G144275 Sobic002G000300--Sobic004G033500 Sobic009G150900 Sobic009G150900 Sobic002G000300--Sobic009G150900 Sobic002G000300--Sobic003G196200 Sobic003G222700 Sobic003G222700 Sobic002G000300--Sobic003G222700 Sobic002G398500 Sobic002G398500 Sobic002G000300--Sobic002G398500 Sobic010G172400 Sobic010G172400 Sobic002G000300--Sobic010G172400 Sobic003G196200--Sobic001G387800 Sobic003G196200--Sobic008G102600 Sobic001G077900 Sobic001G077900 Sobic003G196200--Sobic001G077900 Sobic004G045300 Sobic004G045300 Sobic003G196200--Sobic004G045300 Sobic001G161700 Sobic001G161700 Sobic003G196200--Sobic001G161700 Sobic001G178500 Sobic001G178500 Sobic003G196200--Sobic001G178500 Sobic003G196200--Sobic008G110500 Sobic004G000100 Sobic004G000100 Sobic003G196200--Sobic004G000100 Sobic001G473800 Sobic001G473800 Sobic003G196200--Sobic001G473800 Sobic010G002800 Sobic010G002800 Sobic004G186100--Sobic010G002800 Sobic009G206600 Sobic009G206600 Sobic004G186100--Sobic009G206600 Sobic007G022700 Sobic007G022700 Sobic004G186100--Sobic007G022700 Sobic010G258000 Sobic010G258000 Sobic004G186100--Sobic010G258000 Sobic007G003100 Sobic007G003100 Sobic004G186100--Sobic007G003100 Sobic004G186100--Sobic003G222700 Sobic001G073600 Sobic001G073600 Sobic004G186100--Sobic001G073600 Sobic006G203900 Sobic006G203900 Sobic004G186100--Sobic006G203900 Sobic003G085500 Sobic003G085500 Sobic004G186100--Sobic003G085500 Sobic002G254500 Sobic002G254500 Sobic003G118400--Sobic002G254500 Sobic001G382200 Sobic001G382200 Sobic003G118400--Sobic001G382200 Sobic001G530800 Sobic001G530800 Sobic003G118400--Sobic001G530800 Sobic004G249300 Sobic004G249300 Sobic003G118400--Sobic004G249300 Sobic002G116500 Sobic002G116500 Sobic003G118400--Sobic002G116500 Sobic003G125100 Sobic003G125100 Sobic003G118400--Sobic003G125100 Sobic009G169200 Sobic009G169200 Sobic003G118400--Sobic009G169200 Sobic006G094600 Sobic006G094600 Sobic003G118400--Sobic006G094600 Sobic003G118400--Sobic003G222700 Sobic001G443200 Sobic001G443200 Sobic008G110500--Sobic001G443200 Sobic008G110500--Sobic003G148900 Sobic008G110500--Sobic008G102600 Sobic008G110500--Sobic001G387800 Sobic008G145100 Sobic008G145100 Sobic008G110500--Sobic008G145100 Sobic008G110500--Sobic010G040900 Sobic005G184200 Sobic005G184200 Sobic008G110500--Sobic005G184200 Sobic001G542900 Sobic001G542900 Sobic008G110500--Sobic001G542900 Sobic008G110500--Sobic003G196200 Sobic002G402500 Sobic002G402500 Sobic003G205400--Sobic002G402500 Sobic001G214900 Sobic001G214900 Sobic003G205400--Sobic001G214900 Sobic001G522000 Sobic001G522000 Sobic003G205400--Sobic001G522000 Sobic003G388900 Sobic003G388900 Sobic003G205400--Sobic003G388900 Sobic002G367800 Sobic002G367800 Sobic003G205400--Sobic002G367800 Sobic010G277000 Sobic010G277000 Sobic003G205400--Sobic010G277000 Sobic003G205400--Sobic010G134100 Sobic001G413100 Sobic001G413100 Sobic003G205400--Sobic001G413100 Sobic002G423500 Sobic002G423500 Sobic003G205400--Sobic002G423500 Sobic009G041800--Sobic003G130000 Sobic004G212100 Sobic004G212100 Sobic009G041800--Sobic004G212100 Sobic001G011000 Sobic001G011000 Sobic009G041800--Sobic001G011000 Sobic009G041800--Sobic002G367800 Sobic009G041800--Sobic001G167500 Sobic009G041800--Sobic001G413100 Sobic009G041800--Sobic001G268300 Sobic003G113400 Sobic003G113400 Sobic009G041800--Sobic003G113400 Sobic009G041800--Sobic010G134100
Octagon: transcription factors


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