Gene annotation
Transcriptome id Sobic.002G000300.1
Synonym Sb02g000210, NRPE11, NRPB11, ATRPB13.6, NRPD11
Functional annotation RNA polymerase subunit, putative, expressed
UniProt C5X6I3
Pfam PF13656
Panther DB PTHR13946:SF16 PTHR13946
NCBI CDD KOG4392; RNA polymerase, subunit L
KEGG Orthology K03008; RPB11, DNA-directed RNA polymerase II subunit RPB11
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G52090 : DNA-directed RNA polymerase, RBP11-like
RAP-DB (Rice) LOC_Os07g07610.1 : RNA polymerase subunit, putative, expressed
MaizeGDB (Corn) Zm00025a044812 , Zm00025a016762 , Zm00025a021152 , Zm00025a021153
Brachypodium PNT76846 , KQK20436 , KQK20437 , KQK20434 , KQK20435
Barley HORVU1Hr1G024810.8 , HORVU1Hr1G024810.2 , HORVU1Hr1G024810.3 , HORVU1Hr1G024810.1 , HORVU1Hr1G024810.6 , HORVU1Hr1G024810.7 , HORVU1Hr1G024810.4 , HORVU1Hr1G024810.5 , HORVU5Hr1G073610.4 , HORVU5Hr1G073610.5 , HORVU5Hr1G073610.1 , HORVU5Hr1G073610.2 , HORVU5Hr1G073610.3
Wheat TraesCS1D02G114400 , TraesCS5B02G266700 , TraesCS5D02G275000 , TraesCS1B02G133100 , TraesCS1A02G112800
Populus -


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cDNA sequences
Sobic.002G000300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G118400 expressed protein -
2 Sobic.005G120700 ThiF family domain containing protein, putative, expressed K10684: UBLE1A, ubiquitin-like 1-activating enzyme E1 A
3 Sobic.002G144275 - -
4 Sobic.004G033500 expressed protein -
5 Sobic.009G150900 FabA-like domain containing protein, expressed K02372: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase
6 Sobic.003G196200 elongation factor TS family protein, expressed -
7 Sobic.003G222700 similar to DEAD-box ATP-dependent RNA helicase 26(PubMedID : 29862293)@- K17679: ATP-dependent RNA helicase MSS116, mitochondrial
8 Sobic.002G398500 Mo25, putative, expressed K08272: CAB39, calcium binding protein 39
9 Sobic.010G172400 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
10 Sobic.009G199500 ribosomal protein L27, putative, expressed K02899: RP-L27, MRPL27, large subunit ribosomal protein L27
11 Sobic.002G014400 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon
12 Sobic.004G186100 expressed protein -
13 Sobic.002G131400 GPI mannosyltransferase 1, putative, expressed K05284: GPI mannosyltransferase 1 subunit M
14 Sobic.008G018500 expressed protein -
15 Sobic.010G179700 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
16 Sobic.002G254500 oxidoreductase, putative, expressed K18160: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2
17 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
18 Sobic.002G428100 tim44-like domain containing protein, expressed K17804: mitochondrial import inner membrane translocase subunit TIM44
19 Sobic.007G003100 transmembrane protein 18, putative, expressed -
20 Sobic.009G040500 glioma tumor suppressor candidate region gene 2 protein, putative, expressed K14840: NOP53, nucleolar protein 53


Gene co-expression network
sample Sobic002G000300 Sobic002G000300 Sobic003G118400 Sobic003G118400 Sobic002G000300--Sobic003G118400 Sobic005G120700 Sobic005G120700 Sobic002G000300--Sobic005G120700 Sobic002G144275 Sobic002G144275 Sobic002G000300--Sobic002G144275 Sobic004G033500 Sobic004G033500 Sobic002G000300--Sobic004G033500 Sobic009G150900 Sobic009G150900 Sobic002G000300--Sobic009G150900 Sobic003G196200 Sobic003G196200 Sobic002G000300--Sobic003G196200 Sobic003G222700 Sobic003G222700 Sobic002G000300--Sobic003G222700 Sobic002G398500 Sobic002G398500 Sobic002G000300--Sobic002G398500 Sobic010G172400 Sobic010G172400 Sobic002G000300--Sobic010G172400 Sobic002G254500 Sobic002G254500 Sobic003G118400--Sobic002G254500 Sobic001G382200 Sobic001G382200 Sobic003G118400--Sobic001G382200 Sobic001G530800 Sobic001G530800 Sobic003G118400--Sobic001G530800 Sobic004G249300 Sobic004G249300 Sobic003G118400--Sobic004G249300 Sobic002G116500 Sobic002G116500 Sobic003G118400--Sobic002G116500 Sobic003G125100 Sobic003G125100 Sobic003G118400--Sobic003G125100 Sobic009G169200 Sobic009G169200 Sobic003G118400--Sobic009G169200 Sobic006G094600 Sobic006G094600 Sobic003G118400--Sobic006G094600 Sobic003G118400--Sobic003G222700 Sobic010G269300 Sobic010G269300 Sobic005G120700--Sobic010G269300 Sobic002G430900 Sobic002G430900 Sobic005G120700--Sobic002G430900 Sobic004G287100 Sobic004G287100 Sobic005G120700--Sobic004G287100 Sobic002G017900 Sobic002G017900 Sobic005G120700--Sobic002G017900 Sobic004G256300 Sobic004G256300 Sobic005G120700--Sobic004G256300 Sobic005G120700--Sobic003G222700 Sobic003G360300 Sobic003G360300 Sobic005G120700--Sobic003G360300 Sobic006G245700 Sobic006G245700 Sobic005G120700--Sobic006G245700 Sobic002G252100 Sobic002G252100 Sobic005G120700--Sobic002G252100 Sobic001G402300 Sobic001G402300 Sobic002G144275--Sobic001G402300 Sobic010G179700 Sobic010G179700 Sobic002G144275--Sobic010G179700 Sobic006G043700 Sobic006G043700 Sobic002G144275--Sobic006G043700 Sobic008G137600 Sobic008G137600 Sobic002G144275--Sobic008G137600 Sobic002G131400 Sobic002G131400 Sobic002G144275--Sobic002G131400 Sobic002G144275--Sobic002G116500 Sobic003G273400 Sobic003G273400 Sobic002G144275--Sobic003G273400 Sobic007G220900 Sobic007G220900 Sobic002G144275--Sobic007G220900 Sobic008G110500 Sobic008G110500 Sobic002G144275--Sobic008G110500 Sobic003G130000 Sobic003G130000 Sobic004G033500--Sobic003G130000 Sobic002G027800 Sobic002G027800 Sobic004G033500--Sobic002G027800 Sobic004G033500--Sobic002G000300 Sobic004G033500--Sobic003G196200 Sobic004G186100 Sobic004G186100 Sobic004G033500--Sobic004G186100 Sobic004G033500--Sobic003G118400 Sobic004G033500--Sobic008G110500 Sobic003G205400 Sobic003G205400 Sobic004G033500--Sobic003G205400 Sobic009G041800 Sobic009G041800 Sobic004G033500--Sobic009G041800 Sobic009G150900--Sobic001G530800 Sobic009G150900--Sobic002G000300 Sobic009G150900--Sobic001G382200 Sobic004G208100 Sobic004G208100 Sobic009G150900--Sobic004G208100 Sobic003G109200 Sobic003G109200 Sobic009G150900--Sobic003G109200 Sobic009G258500 Sobic009G258500 Sobic009G150900--Sobic009G258500 Sobic009G150900--Sobic003G118400 Sobic006G189200 Sobic006G189200 Sobic009G150900--Sobic006G189200 Sobic006G265700 Sobic006G265700 Sobic009G150900--Sobic006G265700 Sobic001G387800 Sobic001G387800 Sobic003G196200--Sobic001G387800 Sobic008G102600 Sobic008G102600 Sobic003G196200--Sobic008G102600 Sobic001G077900 Sobic001G077900 Sobic003G196200--Sobic001G077900 Sobic004G045300 Sobic004G045300 Sobic003G196200--Sobic004G045300 Sobic001G161700 Sobic001G161700 Sobic003G196200--Sobic001G161700 Sobic001G178500 Sobic001G178500 Sobic003G196200--Sobic001G178500 Sobic003G196200--Sobic008G110500 Sobic004G000100 Sobic004G000100 Sobic003G196200--Sobic004G000100 Sobic001G473800 Sobic001G473800 Sobic003G196200--Sobic001G473800 Sobic003G222700--Sobic004G256300 Sobic001G467100 Sobic001G467100 Sobic003G222700--Sobic001G467100 Sobic003G222700--Sobic010G172400 Sobic001G061200 Sobic001G061200 Sobic003G222700--Sobic001G061200 Sobic007G022700 Sobic007G022700 Sobic003G222700--Sobic007G022700 Sobic007G173700 Sobic007G173700 Sobic003G222700--Sobic007G173700 Sobic001G229300 Sobic001G229300 Sobic003G222700--Sobic001G229300 Sobic002G142700 Sobic002G142700 Sobic003G222700--Sobic002G142700 Sobic002G399900 Sobic002G399900 Sobic003G222700--Sobic002G399900 Sobic001G043200 Sobic001G043200 Sobic002G398500--Sobic001G043200 Sobic009G199500 Sobic009G199500 Sobic002G398500--Sobic009G199500 Sobic001G474400 Sobic001G474400 Sobic002G398500--Sobic001G474400 Sobic001G343000 Sobic001G343000 Sobic002G398500--Sobic001G343000 Sobic002G398500--Sobic002G131400 Sobic003G113300 Sobic003G113300 Sobic002G398500--Sobic003G113300 Sobic002G398500--Sobic010G172400 Sobic003G445200 Sobic003G445200 Sobic002G398500--Sobic003G445200 Sobic006G103700 Sobic006G103700 Sobic002G398500--Sobic006G103700 Sobic010G172400--Sobic001G467100 Sobic010G172400--Sobic003G222700 Sobic010G172400--Sobic002G399900 Sobic006G091000 Sobic006G091000 Sobic010G172400--Sobic006G091000 Sobic002G182000 Sobic002G182000 Sobic010G172400--Sobic002G182000 Sobic005G114500 Sobic005G114500 Sobic010G172400--Sobic005G114500 Sobic010G172400--Sobic001G474400 Sobic001G097900 Sobic001G097900 Sobic010G172400--Sobic001G097900 Sobic001G012900 Sobic001G012900 Sobic010G172400--Sobic001G012900
Octagon: transcription factors


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